Rh2DG605700

Protein CHLORORESPIRATORY REDUCTION 7

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0014482
Physical Location & Seq
Forward (+)
84007781 .. 84008707
927 bp
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UTR
Exon/CDS
Intron
Rh2DG605700.1

Sequence Viewer

Length: 453 bp
ATGCTCAATTTTGCAAGCAAAATGGTTCCAATGGAAGGAGCTTTGGAGAAACAGTTATGCCACAGTGGAGTTCTCTCTATCAACTGCAAACAAGCAACAAGGCAGGAGATTCCAAACCACCTAATGTCGACCAATAAAACCGAGTTCACAAGTTCGGTAGTCCATCACCGAAATACGGTCAAGGTTTGTGCTGTGAGGAGGAGGATACATACTGATAGCGAAACTTATGTGTTACTGGAACCAGGAGAGGATGAGAAGTTTGTTACAGAAGAAGAGTTGAGGGTCAAGTTGAAAGGTTGGCTGGAAAACTGGCCAGCCAAGAACCTTCCTACTGATCTTGCTAGATTCGAAAGCATTGATGATGCTGTTACTTATTTAGTAAGGTCTGTTTGTGAACTTGAAATCCATGGAGATGTTGGTTCAGTTCAGTGGTACGAAGTTCGTTTAGAATGA

Protein Analysis

150

Amino Acids

17.23

Weight (kDa)

5.7

Isoelectric Point (pI)

50.25

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CRR7 PF12095 68 - 150 4.2e-29 Protein CHLORORESPIRATORY REDUCTION 7
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0014482)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G39210
fragaria_vesca FvH4_6g46840
malus_domestica MD09G1066900.v1.1
prunus_persica Prupe.3G254800_v2.0.a1
pyrus_communis pycom111g05620 pycom17g05950
rosa_chinensis RchiOBHm_Chr2g0165831
rosa_laevigata RLG00000021560
rosa_multiflora Rmu_sc0003227.1_g000001 Rmu_sc0008709.1_g000001
rosa_roxburghii Rroxscaffold_2G00085460
rosa_rugosa Rorug02G0518200
rosa_samantha Rh2AG584000 Rh2BG595900 Rh2CG566900 Rh2DG605700
rosa_wichuraiana Rw2G048690

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 128
AcoI YGGCCR 1 cut(s) 311
AfaI GTAC 1 cut(s) 434
AfiI CCNNNNNNNGG 2 cut(s) 35, 175
AgsI TTSAA 2 cut(s) 292, 401
AjnI CCWGG 1 cut(s) 241
AloI GAACNNNNNNTCC 2 cut(s) 387, 419
AluBI AGCT 1 cut(s) 41
AluI AGCT 1 cut(s) 41
AoxI GGCC 1 cut(s) 311
AsuHPI GGTGA 1 cut(s) 158
AsuII TTCGAA 1 cut(s) 348
BalI TGGCCA 1 cut(s) 313
BccI CCATC 1 cut(s) 171
BciT130I CCWGG 1 cut(s) 243
BciVI GTATCC 1 cut(s) 198
BfaI CTAG 1 cut(s) 342
BfuI GTATCC 1 cut(s) 198
Bme1390I CCNGG 1 cut(s) 243
BmiI GGNNCC 2 cut(s) 27, 240
BmrFI CCNGG 1 cut(s) 243
BmsI GCATC 1 cut(s) 352
Bpu14I TTCGAA 1 cut(s) 348
BsaJI CCNNGG 1 cut(s) 406
BsaXI ACNNNNNCTCC 2 cut(s) 38, 68
Bsc4I CCNNNNNNNGG 2 cut(s) 35, 175
Bse1I ACTGG 2 cut(s) 240, 314
BseBI CCWGG 1 cut(s) 243
BseDI CCNNGG 1 cut(s) 406
BseGI GGATG 1 cut(s) 256
BseLI CCNNNNNNNGG 2 cut(s) 35, 175
BseNI ACTGG 2 cut(s) 240, 314
BseRI GAGGAG 2 cut(s) 211, 214
BshFI GGCC 1 cut(s) 313
BslI CCNNNNNNNGG 2 cut(s) 35, 175
BsnI GGCC 1 cut(s) 313
Bsp119I TTCGAA 1 cut(s) 348
Bsp143I GATC 1 cut(s) 334
Bsp19I CCATGG 1 cut(s) 406
BspANI GGCC 1 cut(s) 313
BspLI GGNNCC 2 cut(s) 27, 240
BspT104I TTCGAA 1 cut(s) 348
BsrI ACTGG 2 cut(s) 240, 314
BssECI CCNNGG 1 cut(s) 406
BssMI GATC 1 cut(s) 334
BssT1I CCWWGG 1 cut(s) 406
Bst2UI CCWGG 1 cut(s) 243
Bst4CI ACNGT 3 cut(s) 54, 65, 178
Bst6I CTCTTC 1 cut(s) 267
BstBI TTCGAA 1 cut(s) 348
BstC8I GCNNGC 2 cut(s) 16, 315
BstDSI CCRYGG 1 cut(s) 406
BstF5I GGATG 1 cut(s) 256
BstKTI GATC 1 cut(s) 337
BstMBI GATC 1 cut(s) 334
BstNI CCWGG 1 cut(s) 243
BstSCI CCNGG 1 cut(s) 241
BsuI GTATCC 1 cut(s) 198
BsuRI GGCC 1 cut(s) 313
BtgI CCRYGG 1 cut(s) 406
BtsCI GGATG 1 cut(s) 256
BtsIMutI CAGTG 2 cut(s) 70, 434
Cac8I GCNNGC 2 cut(s) 16, 315
Csp6I GTAC 1 cut(s) 433
CviAII CATG 1 cut(s) 407
CviJI RGCY 4 cut(s) 41, 301, 313, 317
CviKI_1 RGCY 4 cut(s) 41, 301, 313, 317
CviQI GTAC 1 cut(s) 433
DpnI GATC 1 cut(s) 336
DpnII GATC 1 cut(s) 334
EaeI YGGCCR 1 cut(s) 311
Eam1104I CTCTTC 1 cut(s) 267
EarI CTCTTC 1 cut(s) 267
Eco130I CCWWGG 1 cut(s) 406
EcoRII CCWGG 1 cut(s) 241
EcoT14I CCWWGG 1 cut(s) 406
ErhI CCWWGG 1 cut(s) 406
FaeI CATG 1 cut(s) 410
FaiI YATR 4 cut(s) 58, 210, 228, 408
FatI CATG 1 cut(s) 406
FblI GTMKAC 1 cut(s) 128
FokI GGATG 1 cut(s) 263
FspBI CTAG 1 cut(s) 342
HaeIII GGCC 1 cut(s) 313
Hin1II CATG 1 cut(s) 410
HincII GTYRAC 1 cut(s) 129
HindII GTYRAC 1 cut(s) 129
HinfI GANTC 2 cut(s) 109, 345
HphI GGTGA 1 cut(s) 158
Hpy166II GTNNAC 3 cut(s) 129, 147, 395
Hpy8I GTNNAC 3 cut(s) 129, 147, 395
HpyAV CCTTC 2 cut(s) 29, 335
HpyCH4III ACNGT 3 cut(s) 54, 65, 178
HpyCH4V TGCA 2 cut(s) 14, 87
Hsp92II CATG 1 cut(s) 410
Kzo9I GATC 1 cut(s) 334
LmnI GCTCC 1 cut(s) 38
LpnPI CCDG 7 cut(s) 89, 221, 228, 255, 287, 295, 327
LweI GCATC 1 cut(s) 352
MaeI CTAG 1 cut(s) 342
MaeIII GTNAC 3 cut(s) 231, 262, 367
MalI GATC 1 cut(s) 336
MboI GATC 1 cut(s) 334
MboII GAAGA 2 cut(s) 281, 284
MlsI TGGCCA 1 cut(s) 313
MluCI AATT 1 cut(s) 7
MluNI TGGCCA 1 cut(s) 313
MnlI CCTC 5 cut(s) 189, 192, 195, 241, 273
Mox20I TGGCCA 1 cut(s) 313
MscI TGGCCA 1 cut(s) 313
MslI CAYNNNNRTG 1 cut(s) 411
Msp20I TGGCCA 1 cut(s) 313
MspR9I CCNGG 1 cut(s) 243
MvaI CCWGG 1 cut(s) 243
NcoI CCATGG 1 cut(s) 406
NdeII GATC 1 cut(s) 334
NlaIII CATG 1 cut(s) 410
NlaIV GGNNCC 2 cut(s) 27, 240
NspV TTCGAA 1 cut(s) 348
PfeI GAWTC 2 cut(s) 109, 345
Psp6I CCWGG 1 cut(s) 241
PspGI CCWGG 1 cut(s) 241
PspN4I GGNNCC 2 cut(s) 27, 240
RsaI GTAC 1 cut(s) 434
RsaNI GTAC 1 cut(s) 433
RseI CAYNNNNRTG 1 cut(s) 411
SalI GTCGAC 1 cut(s) 127
Sau3AI GATC 1 cut(s) 334
ScrFI CCNGG 1 cut(s) 243
SetI ASST 6 cut(s) 43, 123, 186, 298, 327, 386
SfaNI GCATC 1 cut(s) 352
SfuI TTCGAA 1 cut(s) 348
SmiMI CAYNNNNRTG 1 cut(s) 411
Sse9I AATT 1 cut(s) 7
SspMI CTAG 1 cut(s) 342
StyD4I CCNGG 1 cut(s) 241
StyI CCWWGG 1 cut(s) 406
TaaI ACNGT 3 cut(s) 54, 65, 178
TaqI TCGA 2 cut(s) 128, 348
TasI AATT 1 cut(s) 7
TfiI GAWTC 2 cut(s) 109, 345
TscAI CASTG 2 cut(s) 70, 434
TspRI CASTG 2 cut(s) 70, 434
XcmI CCANNNNNNNNNTGG 1 cut(s) 413
XmiI GTMKAC 1 cut(s) 128
XspI CTAG 1 cut(s) 342
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.