Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0014482

Physical Location & Seq

Genomic Coordinates Reverse (-)

7760337 .. 7761339

Gene Structure 1003 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00085460.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 429 bp

ATGCTCAATTTTGCAAGCAAAATGGTTCCAATGGAAGGAGCTTTGGAGAAACAGTTATGCCGCAGTGGAGTTCTCTCTATCAACTGCAAACAAGCAACAAAGCAGGAGATTCCAAACCACCTAATGTCGACCAATAAAACCAAGTTCACAAGTTCGGTTTGTGCTGTGAGGAGGAGAAGGATACATACTGATAGTGAAACTTATGTGTTACTGGAACCAGGAGAGGATGAGAAGTTTGTTACAGAAGAAGAGTTGAGGGTCAAGTTGAAAGGTTGGCTGGAAAACTGGCCAGCCAAGAACCTTCCTACTGATCTTGCTAGATTCGAAAGCATTGATGATGCTGTTACTTATTTAGTAAGGTCTGTTTGTGAACTTGAAATCCATGGAGATGTTGGTTCAGTTCAGTGGTACGAAGTTCGTTTAGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008150 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0010275 GO:0016020 GO:0016043 GO:0022607 GO:0034622 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0065003 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CRR7

Protein Analysis

142

Amino Acids

16.3

Weight (kDa)

5.7

Isoelectric Point (pI)

56.83

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CRR7	PF12095	61 - 142	4.1e-29	Protein CHLORORESPIRATORY REDUCTION 7

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0014482)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G39210
fragaria_vesca	FvH4_6g46840
malus_domestica	MD09G1066900.v1.1
prunus_persica	Prupe.3G254800_v2.0.a1
pyrus_communis	pycom111g05620 pycom17g05950
rosa_chinensis	RchiOBHm_Chr2g0165831
rosa_laevigata	RLG00000021560
rosa_multiflora	Rmu_sc0003227.1_g000001 Rmu_sc0008709.1_g000001
rosa_roxburghii	Rroxscaffold_2G00085460
rosa_rugosa	Rorug02G0518200
rosa_samantha	Rh2AG584000 Rh2BG595900 Rh2CG566900 Rh2DG605700
rosa_wichuraiana	Rw2G048690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	128
AciI	CCGC	1 cut(s)	61
AcoI	YGGCCR	1 cut(s)	287
AfaI	GTAC	1 cut(s)	410
AfiI	CCNNNNNNNGG	1 cut(s)	35
AgsI	TTSAA	2 cut(s)	268, 377
AjnI	CCWGG	1 cut(s)	217
AloI	GAACNNNNNNTCC	2 cut(s)	363, 395
AluBI	AGCT	1 cut(s)	41
AluI	AGCT	1 cut(s)	41
AoxI	GGCC	1 cut(s)	287
AsuII	TTCGAA	1 cut(s)	324
BalI	TGGCCA	1 cut(s)	289
BarI	GAAGNNNNNNTAC	2 cut(s)	169, 201
BciT130I	CCWGG	1 cut(s)	219
BciVI	GTATCC	1 cut(s)	174
BfaI	CTAG	1 cut(s)	318
BfuI	GTATCC	1 cut(s)	174
BisI	GCNGC	1 cut(s)	61
BlsI	GCNGC	1 cut(s)	62
Bme1390I	CCNGG	1 cut(s)	219
BmiI	GGNNCC	2 cut(s)	27, 216
BmrFI	CCNGG	1 cut(s)	219
BmsI	GCATC	1 cut(s)	328
Bpu14I	TTCGAA	1 cut(s)	324
BsaJI	CCNNGG	1 cut(s)	382
BsaXI	ACNNNNNCTCC	2 cut(s)	38, 68
Bsc4I	CCNNNNNNNGG	1 cut(s)	35
Bse1I	ACTGG	2 cut(s)	216, 290
BseBI	CCWGG	1 cut(s)	219
BseDI	CCNNGG	1 cut(s)	382
BseGI	GGATG	1 cut(s)	232
BseLI	CCNNNNNNNGG	1 cut(s)	35
BseNI	ACTGG	2 cut(s)	216, 290
BseRI	GAGGAG	2 cut(s)	184, 187
BshFI	GGCC	1 cut(s)	289
BslI	CCNNNNNNNGG	1 cut(s)	35
BsnI	GGCC	1 cut(s)	289
Bsp119I	TTCGAA	1 cut(s)	324
Bsp143I	GATC	1 cut(s)	310
Bsp19I	CCATGG	1 cut(s)	382
BspACI	CCGC	1 cut(s)	61
BspANI	GGCC	1 cut(s)	289
BspLI	GGNNCC	2 cut(s)	27, 216
BspT104I	TTCGAA	1 cut(s)	324
BsrI	ACTGG	2 cut(s)	216, 290
BssECI	CCNNGG	1 cut(s)	382
BssMI	GATC	1 cut(s)	310
BssT1I	CCWWGG	1 cut(s)	382
Bst2UI	CCWGG	1 cut(s)	219
Bst4CI	ACNGT	1 cut(s)	54
Bst6I	CTCTTC	1 cut(s)	243
BstBI	TTCGAA	1 cut(s)	324
BstC8I	GCNNGC	2 cut(s)	16, 291
BstDSI	CCRYGG	1 cut(s)	382
BstF5I	GGATG	1 cut(s)	232
BstKTI	GATC	1 cut(s)	313
BstMBI	GATC	1 cut(s)	310
BstNI	CCWGG	1 cut(s)	219
BstSCI	CCNGG	1 cut(s)	217
BsuI	GTATCC	1 cut(s)	174
BsuRI	GGCC	1 cut(s)	289
BtgI	CCRYGG	1 cut(s)	382
BtsCI	GGATG	1 cut(s)	232
BtsI	GCAGTG	1 cut(s)	70
BtsIMutI	CAGTG	2 cut(s)	70, 410
Cac8I	GCNNGC	2 cut(s)	16, 291
Csp6I	GTAC	1 cut(s)	409
CviAII	CATG	1 cut(s)	383
CviJI	RGCY	4 cut(s)	41, 277, 289, 293
CviKI_1	RGCY	4 cut(s)	41, 277, 289, 293
CviQI	GTAC	1 cut(s)	409
DpnI	GATC	1 cut(s)	312
DpnII	GATC	1 cut(s)	310
EaeI	YGGCCR	1 cut(s)	287
Eam1104I	CTCTTC	1 cut(s)	243
EarI	CTCTTC	1 cut(s)	243
Eco130I	CCWWGG	1 cut(s)	382
EcoRII	CCWGG	1 cut(s)	217
EcoT14I	CCWWGG	1 cut(s)	382
ErhI	CCWWGG	1 cut(s)	382
FaeI	CATG	1 cut(s)	386
FaiI	YATR	4 cut(s)	58, 186, 204, 384
FatI	CATG	1 cut(s)	382
FblI	GTMKAC	1 cut(s)	128
Fnu4HI	GCNGC	1 cut(s)	61
FokI	GGATG	1 cut(s)	239
Fsp4HI	GCNGC	1 cut(s)	61
FspBI	CTAG	1 cut(s)	318
GluI	GCNGC	1 cut(s)	61
HaeIII	GGCC	1 cut(s)	289
Hin1II	CATG	1 cut(s)	386
HincII	GTYRAC	1 cut(s)	129
HindII	GTYRAC	1 cut(s)	129
HinfI	GANTC	2 cut(s)	109, 321
Hpy166II	GTNNAC	3 cut(s)	129, 147, 371
Hpy8I	GTNNAC	3 cut(s)	129, 147, 371
HpyAV	CCTTC	3 cut(s)	29, 171, 311
HpyCH4III	ACNGT	1 cut(s)	54
HpyCH4V	TGCA	2 cut(s)	14, 87
Hsp92II	CATG	1 cut(s)	386
Kzo9I	GATC	1 cut(s)	310
LmnI	GCTCC	1 cut(s)	38
LpnPI	CCDG	7 cut(s)	89, 197, 204, 231, 263, 271, 303
LweI	GCATC	1 cut(s)	328
MaeI	CTAG	1 cut(s)	318
MaeIII	GTNAC	3 cut(s)	207, 238, 343
MalI	GATC	1 cut(s)	312
MboI	GATC	1 cut(s)	310
MboII	GAAGA	2 cut(s)	257, 260
MlsI	TGGCCA	1 cut(s)	289
MluCI	AATT	1 cut(s)	7
MluNI	TGGCCA	1 cut(s)	289
MnlI	CCTC	4 cut(s)	162, 165, 217, 249
Mox20I	TGGCCA	1 cut(s)	289
MscI	TGGCCA	1 cut(s)	289
MslI	CAYNNNNRTG	1 cut(s)	387
Msp20I	TGGCCA	1 cut(s)	289
MspR9I	CCNGG	1 cut(s)	219
MvaI	CCWGG	1 cut(s)	219
NcoI	CCATGG	1 cut(s)	382
NdeII	GATC	1 cut(s)	310
NlaIII	CATG	1 cut(s)	386
NlaIV	GGNNCC	2 cut(s)	27, 216
NspV	TTCGAA	1 cut(s)	324
PfeI	GAWTC	2 cut(s)	109, 321
PkrI	GCNGC	1 cut(s)	62
Psp6I	CCWGG	1 cut(s)	217
PspGI	CCWGG	1 cut(s)	217
PspN4I	GGNNCC	2 cut(s)	27, 216
RsaI	GTAC	1 cut(s)	410
RsaNI	GTAC	1 cut(s)	409
RseI	CAYNNNNRTG	1 cut(s)	387
SalI	GTCGAC	1 cut(s)	127
SatI	GCNGC	1 cut(s)	61
Sau3AI	GATC	1 cut(s)	310
ScrFI	CCNGG	1 cut(s)	219
SetI	ASST	5 cut(s)	43, 123, 274, 303, 362
SfaNI	GCATC	1 cut(s)	328
SfuI	TTCGAA	1 cut(s)	324
SmiMI	CAYNNNNRTG	1 cut(s)	387
Sse9I	AATT	1 cut(s)	7
SsiI	CCGC	1 cut(s)	61
SspMI	CTAG	1 cut(s)	318
StyD4I	CCNGG	1 cut(s)	217
StyI	CCWWGG	1 cut(s)	382
TaaI	ACNGT	1 cut(s)	54
TaqI	TCGA	2 cut(s)	128, 324
TasI	AATT	1 cut(s)	7
TauI	GCSGC	1 cut(s)	63
TfiI	GAWTC	2 cut(s)	109, 321
TscAI	CASTG	2 cut(s)	70, 410
TspRI	CASTG	2 cut(s)	70, 410
XcmI	CCANNNNNNNNNTGG	1 cut(s)	389
XmiI	GTMKAC	1 cut(s)	128
XspI	CTAG	1 cut(s)	318

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.