AT5G39660

DOF factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0003750
Physical Location & Seq
Forward (+)
15878698 .. 15881537
2840 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G39660.3

Sequence Viewer

Length: 1374 bp
ATGGCTGATCCGGCGATTAAGCTCTTTGGAAAGACGATTCCTTTACCTGAGCTTGGTGTTGTTGATTCTTCTTCTAGCTATACCGGATTTTTAACCGAAACTCAGATTCCTGTTCGGTTATCAGATTCGTGTACCGGCGATGATGATGATGAAGAGATGGGTGATTCCGGTTTAGGACGAGAAGAAGGTGATGATGTTGGTGATGGTGGAGGAGAGAGCGAGACTGATAAAAAGGAAGAAAAAGATAGTGAGTGTCAGGAAGAGTCATTGAGGAATGAATCTAATGATGTTACTACTACTACATCGGGTATAACTGAAAAAACGGAAACAACAAAAGCTGCAAAGACGAATGAAGAGTCAGGTGGTACTGCTTGCTCTCAAGAGGGGAAGTTAAAGAAACCTGATAAGATTCTACCGTGTCCGCGATGTAACAGCATGGAAACCAAGTTCTGTTACTACAACAACTATAATGTTAACCAACCTCGCCATTTCTGCAAGAAATGTCAGAGATATTGGACAGCTGGTGGAACGATGAGGAATGTTCCGGTTGGTGCTGGGAGACGTAAGAATAAGAGTCCAGCTTCTCATTATAACCGTCATGTAAGTATAACATCTGCGGAAGCTATGCAGAAGGTGGCGAGAACTGATCTTCAACATCCTAATGGTGCAAATCTTCTCACTTTTGGCTCTGATTCTGTGCTTTGTGAATCTATGGCTTCTGGATTGAATCTTGTTGAGAAGTCATTGTTGAAGACACAAACTGTATTGCAAGAACCCAATGAAGGCTTGAAGATTACGGTTCCGTTAAACCAGACAAACGAAGAAGCTGGAACAGTCAGCCCGTTACCAAAAGTTCCATGCTTTCCAGGACCACCACCAACTTGGCCTTACGCTTGGAACGGAGTTTCGTGGACGATTTTACCGTTTTACCCTCCACCGGCTTACTGGAGCTGCCCGGGGGTTTCACCGGGGGCATGGAACAGCTTCACATGGATGCCACAACCCAATTCACCATCTGGTTCCAATCCAAATTCTCCTACACTAGGTAAACATTCACGTGACGAGAACGCTGCTGAACCAGGAACCGCTTTTGATGAAACCGAGTCACTTGGTAGGGAGAAAAGCAAACCCGAGAGATGCTTGTGGGTTCCCAAGACGCTGAGGATTGATGATCCAGAGGAAGCTGCTAAAAGTTCCATCTGGGAAACATTAGGGATCAAAAAAGACGAAAATGCGGATACTTTCGGAGCTTTCAGATCATCAACCAAAGAAAAAAGCAGTCTTTCTGAAGGAAGACTTCCGGGAAGAAGACCGGAGTTGCAAGCGAATCCTGCTGCTCTTTCTAGGTCAGCAAACTTCCATGAGAGCTCATAG

Protein Analysis

457

Amino Acids

49.81

Weight (kDa)

5.19

Isoelectric Point (pI)

55.85

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Zn_ribbon_Dof PF02701 136 - 192 1.2e-32 Dof domain, zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 591
AccII CGCG 1 cut(s) 424
AciI CCGC 4 cut(s) 422, 617, 1086, 1235
AclWI GGATC 3 cut(s) 2, 1166, 1223
AcsI RAATTY 1 cut(s) 1030
AcuI CTGAAG 1 cut(s) 1308
AcvI CACGTG 1 cut(s) 1058
AfaI GTAC 2 cut(s) 133, 367
AfiI CCNNNNNNNGG 4 cut(s) 53, 782, 937, 1043
AgsI TTSAA 4 cut(s) 653, 727, 751, 790
AjnI CCWGG 2 cut(s) 865, 1078
AloI GAACNNNNNNTCC 2 cut(s) 431, 463
Alw21I GWGCWC 1 cut(s) 1370
Alw26I GTCTC 2 cut(s) 215, 553
AlwI GGATC 3 cut(s) 2, 1166, 1223
Ama87I CYCGRG 2 cut(s) 955, 1130
AoxI GGCC 1 cut(s) 884
ApeKI GCWGC 5 cut(s) 338, 951, 1070, 1184, 1334
ApoI RAATTY 1 cut(s) 1030
ArsI GACNNNNNNTTYG 2 cut(s) 341, 373
Asp700I GAANNNNTTC 1 cut(s) 983
AspS9I GGNCC 1 cut(s) 869
AsuC2I CCSGG 4 cut(s) 956, 957, 969, 1302
AsuHPI GGTGA 5 cut(s) 173, 200, 212, 957, 1002
AvaI CYCGRG 2 cut(s) 955, 1130
AvaII GGWCC 1 cut(s) 869
BanII GRGCYC 1 cut(s) 1370
BbrPI CACGTG 1 cut(s) 1058
BbsI GAAGAC 3 cut(s) 758, 1300, 1315
Bbv12I GWGCWC 1 cut(s) 1370
BbvCI CCTCAGC 1 cut(s) 1160
BbvI GCAGC 5 cut(s) 325, 938, 1057, 1171, 1321
BccI CCATC 4 cut(s) 151, 197, 1021, 1205
BcgI CGANNNNNNTGC 2 cut(s) 1052, 1086
BciT130I CCWGG 2 cut(s) 867, 1080
BciVI GTATCC 1 cut(s) 1231
BcnI CCSGG 4 cut(s) 956, 957, 969, 1302
BcoDI GTCTC 2 cut(s) 215, 553
BfaI CTAG 3 cut(s) 75, 1043, 1344
BfuI GTATCC 1 cut(s) 1231
BisI GCNGC 5 cut(s) 339, 952, 1071, 1185, 1335
BlsI GCNGC 5 cut(s) 340, 953, 1072, 1186, 1336
Bme1390I CCNGG 6 cut(s) 867, 956, 957, 969, 1080, 1302
Bme18I GGWCC 1 cut(s) 869
BmeT110I CYCGRG 2 cut(s) 955, 1130
BmgT120I GGNCC 1 cut(s) 869
BmiI GGNNCC 4 cut(s) 801, 1021, 1084, 1149
BmrFI CCNGG 6 cut(s) 867, 956, 957, 969, 1080, 1302
BmsI GCATC 2 cut(s) 984, 1127
BpiI GAAGAC 3 cut(s) 758, 1300, 1315
BpmI CTGGAG 1 cut(s) 967
Bpu10I CCTNAGC 2 cut(s) 48, 1160
BpuEI CTTGAG 1 cut(s) 363
BpuMI CCSGG 4 cut(s) 956, 957, 969, 1302
BsaAI YACGTR 1 cut(s) 1058
BsaJI CCNNGG 3 cut(s) 955, 956, 968
BsaWI WCCGGW 4 cut(s) 83, 167, 544, 1312
Bsc4I CCNNNNNNNGG 4 cut(s) 53, 782, 937, 1043
Bse118I RCCGGY 2 cut(s) 134, 937
Bse1I ACTGG 1 cut(s) 950
BseBI CCWGG 2 cut(s) 867, 1080
BseDI CCNNGG 3 cut(s) 955, 956, 968
BseGI GGATG 2 cut(s) 655, 999
BseLI CCNNNNNNNGG 4 cut(s) 53, 782, 937, 1043
BseMII CTCAG 3 cut(s) 39, 116, 1151
BseNI ACTGG 1 cut(s) 950
BseRI GAGGAG 1 cut(s) 225
BseXI GCAGC 5 cut(s) 325, 938, 1057, 1171, 1321
BseYI CCCAGC 1 cut(s) 554
Bsh1236I CGCG 1 cut(s) 424
BshFI GGCC 1 cut(s) 886
BsiHKAI GWGCWC 1 cut(s) 1370
BsiHKCI CYCGRG 2 cut(s) 955, 1130
BslI CCNNNNNNNGG 4 cut(s) 53, 782, 937, 1043
BsmAI GTCTC 2 cut(s) 215, 553
BsmBI CGTCTC 1 cut(s) 553
BsnI GGCC 1 cut(s) 886
BsoBI CYCGRG 2 cut(s) 955, 1130
Bsp1286I GDGCHC 1 cut(s) 1370
Bsp143I GATC 5 cut(s) 7, 646, 1171, 1215, 1256
BspACI CCGC 4 cut(s) 422, 617, 1086, 1235
BspANI GGCC 1 cut(s) 886
BspCNI CTCAG 3 cut(s) 40, 115, 1152
BspFNI CGCG 1 cut(s) 424
BspLI GGNNCC 4 cut(s) 801, 1021, 1084, 1149
BspPI GGATC 3 cut(s) 2, 1166, 1223
BsrFI RCCGGY 2 cut(s) 134, 937
BsrI ACTGG 1 cut(s) 950
BssAI RCCGGY 2 cut(s) 134, 937
BssECI CCNNGG 3 cut(s) 955, 956, 968
BssMI GATC 5 cut(s) 7, 646, 1171, 1215, 1256
Bst2UI CCWGG 2 cut(s) 867, 1080
Bst4CI ACNGT 6 cut(s) 417, 596, 763, 799, 835, 924
Bst6I CTCTTC 3 cut(s) 147, 255, 348
BstBAI YACGTR 1 cut(s) 1058
BstC8I GCNNGC 2 cut(s) 373, 1323
BstDEI CTNAG 3 cut(s) 48, 102, 1160
BstENI CCTNNNNNAGG 1 cut(s) 1041
BstF5I GGATG 2 cut(s) 655, 999
BstFNI CGCG 1 cut(s) 424
BstKTI GATC 5 cut(s) 10, 649, 1174, 1218, 1259
BstMAI GTCTC 2 cut(s) 215, 553
BstMBI GATC 5 cut(s) 7, 646, 1171, 1215, 1256
BstMWI GCNNNNNNNGC 3 cut(s) 11, 492, 1331
BstNI CCWGG 2 cut(s) 867, 1080
BstSCI CCNGG 6 cut(s) 865, 954, 955, 967, 1078, 1300
BstUI CGCG 1 cut(s) 424
BstV1I GCAGC 5 cut(s) 325, 938, 1057, 1171, 1321
BstV2I GAAGAC 3 cut(s) 758, 1300, 1315
BstXI CCANNNNNNTGG 1 cut(s) 882
BsuI GTATCC 1 cut(s) 1231
BsuRI GGCC 1 cut(s) 886
BtgZI GCGATG 2 cut(s) 153, 439
BtsCI GGATG 2 cut(s) 655, 999
Cac8I GCNNGC 2 cut(s) 373, 1323
Cfr10I RCCGGY 2 cut(s) 134, 937
Cfr13I GGNCC 1 cut(s) 869
Cfr9I CCCGGG 1 cut(s) 955
CseI GACGC 1 cut(s) 1165
Csp6I GTAC 2 cut(s) 132, 366
CviAII CATG 6 cut(s) 436, 599, 858, 975, 990, 1361
CviQI GTAC 2 cut(s) 132, 366
DdeI CTNAG 3 cut(s) 48, 102, 1160
DpnI GATC 5 cut(s) 9, 648, 1173, 1217, 1258
DpnII GATC 5 cut(s) 7, 646, 1171, 1215, 1256
Eam1104I CTCTTC 3 cut(s) 147, 255, 348
EarI CTCTTC 3 cut(s) 147, 255, 348
Ecl136II GAGCTC 1 cut(s) 1368
Eco24I GRGCYC 1 cut(s) 1370
Eco47I GGWCC 1 cut(s) 869
Eco53kI GAGCTC 1 cut(s) 1368
Eco57I CTGAAG 1 cut(s) 1308
Eco72I CACGTG 1 cut(s) 1058
Eco88I CYCGRG 2 cut(s) 955, 1130
EcoICRI GAGCTC 1 cut(s) 1368
EcoNI CCTNNNNNAGG 1 cut(s) 1041
EcoRII CCWGG 2 cut(s) 865, 1078
EcoT38I GRGCYC 1 cut(s) 1370
Esp3I CGTCTC 1 cut(s) 553
FaeI CATG 6 cut(s) 439, 602, 861, 978, 993, 1364
FalI AAGNNNNNCTT 2 cut(s) 1281, 1313
FatI CATG 6 cut(s) 435, 598, 857, 974, 989, 1360
Fnu4HI GCNGC 5 cut(s) 339, 952, 1071, 1185, 1335
FokI GGATG 2 cut(s) 642, 1006
FriOI GRGCYC 1 cut(s) 1370
Fsp4HI GCNGC 5 cut(s) 339, 952, 1071, 1185, 1335
FspBI CTAG 3 cut(s) 75, 1043, 1344
GluI GCNGC 5 cut(s) 339, 952, 1071, 1185, 1335
GsaI CCCAGC 1 cut(s) 558
GsuI CTGGAG 1 cut(s) 967
HaeIII GGCC 1 cut(s) 886
HgaI GACGC 1 cut(s) 1165
Hin1II CATG 6 cut(s) 439, 602, 861, 978, 993, 1364
HincII GTYRAC 1 cut(s) 475
HindII GTYRAC 1 cut(s) 475
HpaI GTTAAC 1 cut(s) 475
HphI GGTGA 5 cut(s) 173, 200, 212, 957, 1002
Hpy166II GTNNAC 4 cut(s) 132, 475, 912, 1049
Hpy188I TCNGA 7 cut(s) 105, 124, 507, 691, 1247, 1256, 1288
Hpy188III TCNNGA 4 cut(s) 257, 380, 720, 1175
Hpy8I GTNNAC 4 cut(s) 132, 475, 912, 1049
HpyAV CCTTC 4 cut(s) 179, 625, 776, 1283
HpyCH4III ACNGT 6 cut(s) 417, 596, 763, 799, 835, 924
HpyCH4IV ACGT 2 cut(s) 562, 1057
HpyCH4V TGCA 6 cut(s) 341, 495, 628, 668, 769, 1321
HpyF10VI GCNNNNNNNGC 3 cut(s) 11, 492, 1331
HpyF3I CTNAG 3 cut(s) 48, 102, 1160
HpySE526I ACGT 2 cut(s) 562, 1057
Hsp92II CATG 6 cut(s) 439, 602, 861, 978, 993, 1364
KspAI GTTAAC 1 cut(s) 475
Kzo9I GATC 5 cut(s) 7, 646, 1171, 1215, 1256
LmnI GCTCC 2 cut(s) 948, 1247
Lsp1109I GCAGC 5 cut(s) 325, 938, 1057, 1171, 1321
LweI GCATC 2 cut(s) 984, 1127
MaeI CTAG 3 cut(s) 75, 1043, 1344
MaeII ACGT 2 cut(s) 562, 1057
MaeIII GTNAC 6 cut(s) 289, 428, 452, 843, 1058, 1104
MalI GATC 5 cut(s) 9, 648, 1173, 1217, 1258
MboI GATC 5 cut(s) 7, 646, 1171, 1215, 1256
MhlI GDGCHC 1 cut(s) 1370
MluCI AATT 2 cut(s) 1006, 1030
MlyI GAGTC 4 cut(s) 272, 365, 583, 1112
MnlI CCTC 8 cut(s) 203, 264, 376, 492, 528, 942, 1155, 1171
MroXI GAANNNNTTC 1 cut(s) 983
MseI TTAA 5 cut(s) 18, 92, 392, 474, 806
MslI CAYNNNNRTG 3 cut(s) 660, 992, 1056
MspA1I CMGCKG 1 cut(s) 521
MspR9I CCNGG 6 cut(s) 867, 956, 957, 969, 1080, 1302
MvaI CCWGG 2 cut(s) 867, 1080
MvnI CGCG 1 cut(s) 424
MwoI GCNNNNNNNGC 3 cut(s) 11, 492, 1331
NciI CCSGG 4 cut(s) 956, 957, 969, 1302
NdeII GATC 5 cut(s) 7, 646, 1171, 1215, 1256
NlaIII CATG 6 cut(s) 439, 602, 861, 978, 993, 1364
NlaIV GGNNCC 4 cut(s) 801, 1021, 1084, 1149
NmuCI GTSAC 2 cut(s) 1058, 1104
PcsI WCGNNNNNNNCGW 1 cut(s) 920
PdmI GAANNNNTTC 1 cut(s) 983
PfoI TCCNGGA 2 cut(s) 865, 1300
PkrI GCNGC 5 cut(s) 340, 953, 1072, 1186, 1336
PleI GAGTC 4 cut(s) 271, 364, 582, 1111
PmaCI CACGTG 1 cut(s) 1058
PmlI CACGTG 1 cut(s) 1058
PpsI GAGTC 4 cut(s) 271, 364, 582, 1111
Ppu21I YACGTR 1 cut(s) 1058
PsiI TTATAA 1 cut(s) 591
Psp124BI GAGCTC 1 cut(s) 1370
Psp6I CCWGG 2 cut(s) 865, 1078
PspCI CACGTG 1 cut(s) 1058
PspFI CCCAGC 1 cut(s) 554
PspGI CCWGG 2 cut(s) 865, 1078
PspN4I GGNNCC 4 cut(s) 801, 1021, 1084, 1149
PspPI GGNCC 1 cut(s) 869
PvuII CAGCTG 1 cut(s) 521
RsaI GTAC 2 cut(s) 133, 367
RsaNI GTAC 2 cut(s) 132, 366
RseI CAYNNNNRTG 3 cut(s) 660, 992, 1056
SacI GAGCTC 1 cut(s) 1370
SaqAI TTAA 5 cut(s) 18, 92, 392, 474, 806
SatI GCNGC 5 cut(s) 339, 952, 1071, 1185, 1335
Sau3AI GATC 5 cut(s) 7, 646, 1171, 1215, 1256
Sau96I GGNCC 1 cut(s) 869
SchI GAGTC 4 cut(s) 272, 365, 583, 1112
ScrFI CCNGG 6 cut(s) 867, 956, 957, 969, 1080, 1302
SduI GDGCHC 1 cut(s) 1370
SfaNI GCATC 2 cut(s) 984, 1127
SinI GGWCC 1 cut(s) 869
SmaI CCCGGG 1 cut(s) 957
SmiMI CAYNNNNRTG 3 cut(s) 660, 992, 1056
SmlI CTYRAG 1 cut(s) 378
SmoI CTYRAG 1 cut(s) 378
Sse9I AATT 2 cut(s) 1006, 1030
SsiI CCGC 4 cut(s) 422, 617, 1086, 1235
SspMI CTAG 3 cut(s) 75, 1043, 1344
SstI GAGCTC 1 cut(s) 1370
StyD4I CCNGG 6 cut(s) 865, 954, 955, 967, 1078, 1300
TaaI ACNGT 6 cut(s) 417, 596, 763, 799, 835, 924
TaiI ACGT 2 cut(s) 565, 1060
TasI AATT 2 cut(s) 1006, 1030
Tru1I TTAA 5 cut(s) 18, 92, 392, 474, 806
Tru9I TTAA 5 cut(s) 18, 92, 392, 474, 806
TseFI GTSAC 2 cut(s) 1058, 1104
TseI GCWGC 5 cut(s) 338, 951, 1070, 1184, 1334
Tsp45I GTSAC 2 cut(s) 1058, 1104
TspDTI ATGAA 5 cut(s) 165, 291, 366, 795, 1110
TspGWI ACGGA 3 cut(s) 338, 792, 915
TspMI CCCGGG 1 cut(s) 955
VpaK11BI GGWCC 1 cut(s) 869
XagI CCTNNNNNAGG 1 cut(s) 1041
XapI RAATTY 1 cut(s) 1030
XcmI CCANNNNNNNNNTGG 2 cut(s) 879, 942
XmaI CCCGGG 1 cut(s) 955
XmnI GAANNNNTTC 1 cut(s) 983
XspI CTAG 3 cut(s) 75, 1043, 1344
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.