Rh4DG377700

Cyclic dof factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4D
OG0003750
Physical Location & Seq
Reverse (-)
59544192 .. 59548230
4039 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4DG377700.1

Sequence Viewer

Length: 1587 bp
ATGTCTGAGAATGAAATCAGCCCCACCATAAAGCTCTTCGGAAAGACCATACCTTTGGCTTCGGCGCCACACAACGGCCATGAGGTTCCGACCAATGATGACCCGCCATGTGGAGCTTCCGACTCTGCTGTTGACTCTAAGATTTCTGCTGCTGCTGCTGCTTCCGGTGGTGGTGCTGTTGAAGAAGAAGATTGCTCAGTCAAGCTTCCTTGTTGTTCAGAAACTACTTCGCCTGAAGACCAAGAGAACAAGGAAACAATATCAGGCAAAGAATTCACTGCTGACAAAGAGGAAGATAATCCCTTAGATCAATTCACAGAAGACTTGAAACCTCCAACAACATCGTCGGGAATTAGTGAGAATCCCAAAACTCCCTCAGCTGATAGAGAAACTTCAGTATCTCTGAAATCTTCTAAGAATGGAGAACAGAGTGATGAGACCAGTTGCTCACAAGACAAGACTCTGAAGAAGCCAGACAAGATACTTCCATGTCCCCGATGTAATAGCATGGACACCAAGTTCTGTTACTACAATAACTACAACGTCAATCAGCCCCGCCATTTTTGCAAGAACTGTCAAAGATACTGGACTGCCGGAGGAATCATGAGGAATGTTCCTGTGGGAGCTGGTCGTCGCAAGAACAAGAACGCTTCATCAGCTTCACACTATCGTCACATGTTAATGTCGGATGCTCTCCAAACAGCTCATGCTACTGCTGCTGCTGCTTCTAATGGCGCTCACAATCCAACATTGGGAAGAAATGGCACTGTCCTTACCTTTGGTTCAGATTCTCCTCTTTGTGAATCAATGGCTTCTGTATTGAACCTTGCCGAGAAAACACAAAACTCTCTTCAGAATGGTTTTCATGTACCTGATCAACAAAGAATTCTGGTTCCTTCCATAACTGGAGATAATGGGGATGACCAATCAAGTGGATCGTCTAATGTTACAGCTTCGAATTCATCAGAGGGGGGATGCAAAGCTGGTATACAAGAACCAGCGGTTCACAACTGTCAAAGCTTCTCTCCTCATCAAGTACCATGCTTTCCAGGCTCCCCTTGGCCTTATCCATGGAACTCACCTCAGTGGACCTCTGCAATGCCTCCGCCTGCATTCTTCCATTCAGGGTTTCCCATATCATTCTACCCTGCACCACCATACTGGGGCTGCACTGGACCCGGCTCTTGGAATGTACCATGTAATTCTCCACCATCCTCCAATCTTAGCCACTGTGGTACAAGCTCTGGTCCAAATTCCCCGACCTTAGGGAAACATCCAAGAGACGGGGACATTCTTAGTCAAGCCAGCTCTCAAAAAGAAGAGTCCAGCAGAGATAACAGGTCAGATAGATGTGTTTTGATTCCGAAAACGTTAAGGATTGATGATCCTAGTGAAGCTGCAAAGAGCTCTATATGGGAAACTCTTGGCATCAAGAATGAAAAGGGAAATTCTATCAACGAGGGAGGTATCTTCAAGTCATTTGAATCCAAGGGACACGAGAAAAGGCAAGTTGTTGAACAATCTTCGGTATTGCAAGCTAATCCTGCAGCCTTTTCCCGGTCACTCAACTTCCGTGAGATCTCATGA

Protein Analysis

528

Amino Acids

56.62

Weight (kDa)

5.73

Isoelectric Point (pI)

52.52

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Zn_ribbon_Dof PF02701 160 - 216 1.4e-32 Dof domain, zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 64
AccI GTMKAC 1 cut(s) 988
AciI CCGC 4 cut(s) 104, 556, 1001, 1106
AclI AACGTT 1 cut(s) 1370
AclWI GGATC 2 cut(s) 943, 1379
AcoI YGGCCR 1 cut(s) 76
AcsI RAATTY 5 cut(s) 272, 885, 958, 1252, 1447
AcuI CTGAAG 4 cut(s) 255, 378, 485, 836
AcyI GRCGYC 1 cut(s) 65
AfaI GTAC 4 cut(s) 870, 1038, 1194, 1237
AfiI CCNNNNNNNGG 8 cut(s) 74, 110, 752, 1163, 1185, 1265, 1283, 1557
AflIII ACRYGT 1 cut(s) 675
AgsI TTSAA 6 cut(s) 182, 328, 823, 1474, 1484, 1517
AjnI CCWGG 1 cut(s) 1048
AleI CACNNNNGTG 1 cut(s) 1084
AloI GAACNNNNNNTCC 2 cut(s) 503, 535
Alw21I GWGCWC 1 cut(s) 1409
Alw26I GTCTC 2 cut(s) 431, 1275
AlwI GGATC 2 cut(s) 943, 1379
AoxI GGCC 2 cut(s) 76, 1061
ApoI RAATTY 5 cut(s) 272, 885, 958, 1252, 1447
ArsI GACNNNNNNTTYG 2 cut(s) 37, 69
AspLEI GCGC 2 cut(s) 67, 737
AspS9I GGNCC 3 cut(s) 1089, 1175, 1247
AsuC2I CCSGG 2 cut(s) 1179, 1558
AsuHPI GGTGA 1 cut(s) 1071
AsuII TTCGAA 1 cut(s) 956
AvaII GGWCC 3 cut(s) 1089, 1175, 1247
AxyI CCTNAGG 1 cut(s) 1264
BaeI ACNNNNGTAYC 2 cut(s) 381, 414
BanI GGYRCC 1 cut(s) 64
BanII GRGCYC 1 cut(s) 1409
BauI CACGAG 1 cut(s) 1496
BbsI GAAGAC 2 cut(s) 243, 327
Bbv12I GWGCWC 1 cut(s) 1409
BbvCI CCTCAGC 1 cut(s) 376
BccI CCATC 1 cut(s) 1219
BceAI ACGGC 1 cut(s) 91
BciT130I CCWGG 1 cut(s) 1050
BclI TGATCA 1 cut(s) 874
BcnI CCSGG 2 cut(s) 1179, 1558
BcoDI GTCTC 2 cut(s) 431, 1275
BfaI CTAG 1 cut(s) 1389
BfmI CTRYAG 1 cut(s) 1545
BfoI RGCGCY 2 cut(s) 68, 738
BglII AGATCT 1 cut(s) 1578
Bme1390I CCNGG 3 cut(s) 1050, 1179, 1558
Bme18I GGWCC 3 cut(s) 1089, 1175, 1247
BmgT120I GGNCC 3 cut(s) 1089, 1175, 1247
BmiI GGNNCC 5 cut(s) 66, 87, 894, 1054, 1177
BmrFI CCNGG 3 cut(s) 1050, 1179, 1558
BmrI ACTGGG 1 cut(s) 1171
BmsI GCATC 3 cut(s) 679, 965, 1437
BmuI ACTGGG 1 cut(s) 1171
BpiI GAAGAC 2 cut(s) 243, 327
BpmI CTGGAG 1 cut(s) 927
Bpu10I CCTNAGC 1 cut(s) 376
Bpu14I TTCGAA 1 cut(s) 956
BpuMI CCSGG 2 cut(s) 1179, 1558
BsaHI GRCGYC 1 cut(s) 65
BsaI GGTCTC 1 cut(s) 431
BsaJI CCNNGG 3 cut(s) 1058, 1070, 1488
BsaWI WCCGGW 1 cut(s) 164
Bsc4I CCNNNNNNNGG 8 cut(s) 74, 110, 752, 1163, 1185, 1265, 1283, 1557
Bse1I ACTGG 5 cut(s) 441, 590, 910, 1166, 1177
Bse21I CCTNAGG 1 cut(s) 1264
Bse3DI GCAATG 1 cut(s) 1104
BseBI CCWGG 1 cut(s) 1050
BseDI CCNNGG 3 cut(s) 1058, 1070, 1488
BseGI GGATG 5 cut(s) 694, 925, 980, 1211, 1273
BseLI CCNNNNNNNGG 8 cut(s) 74, 110, 752, 1163, 1185, 1265, 1283, 1557
BseMI GCAATG 1 cut(s) 1104
BseMII CTCAG 3 cut(s) 210, 390, 1097
BseNI ACTGG 5 cut(s) 441, 590, 910, 1166, 1177
BseRI GAGGAG 2 cut(s) 783, 1017
BsgI GTGCAG 2 cut(s) 1134, 1153
BshFI GGCC 2 cut(s) 78, 1063
BshNI GGYRCC 1 cut(s) 64
BsiHKAI GWGCWC 1 cut(s) 1409
BsiSI CCGG 4 cut(s) 165, 594, 1179, 1558
BslFI GGGAC 3 cut(s) 477, 1301, 1506
BslI CCNNNNNNNGG 8 cut(s) 74, 110, 752, 1163, 1185, 1265, 1283, 1557
BsmAI GTCTC 2 cut(s) 431, 1275
BsmBI CGTCTC 1 cut(s) 1275
BsmFI GGGAC 3 cut(s) 477, 1301, 1506
BsmI GAATGC 1 cut(s) 1112
BsnI GGCC 2 cut(s) 78, 1063
Bso31I GGTCTC 1 cut(s) 431
Bsp119I TTCGAA 1 cut(s) 956
Bsp1286I GDGCHC 1 cut(s) 1409
Bsp143I GATC 5 cut(s) 307, 874, 935, 1384, 1578
Bsp19I CCATGG 1 cut(s) 1070
BspACI CCGC 4 cut(s) 104, 556, 1001, 1106
BspANI GGCC 2 cut(s) 78, 1063
BspCNI CTCAG 3 cut(s) 209, 389, 1096
BspHI TCATGA 2 cut(s) 603, 1583
BspLI GGNNCC 5 cut(s) 66, 87, 894, 1054, 1177
BspMAI CTGCAG 1 cut(s) 1549
BspPI GGATC 2 cut(s) 943, 1379
BspQI GCTCTTC 1 cut(s) 41
BspT104I TTCGAA 1 cut(s) 956
BspT107I GGYRCC 1 cut(s) 64
BspTNI GGTCTC 1 cut(s) 431
BsrDI GCAATG 1 cut(s) 1104
BsrI ACTGG 5 cut(s) 441, 590, 910, 1166, 1177
BssECI CCNNGG 3 cut(s) 1058, 1070, 1488
BssMI GATC 5 cut(s) 307, 874, 935, 1384, 1578
BssNAI GTATAC 1 cut(s) 989
BssNI GRCGYC 1 cut(s) 65
BssSI CACGAG 1 cut(s) 1496
BssT1I CCWWGG 3 cut(s) 1058, 1070, 1488
Bst1107I GTATAC 1 cut(s) 989
Bst2BI CACGAG 1 cut(s) 1496
Bst2UI CCWGG 1 cut(s) 1050
Bst4CI ACNGT 4 cut(s) 575, 769, 1013, 1232
Bst6I CTCTTC 3 cut(s) 41, 855, 1314
BstACI GRCGYC 1 cut(s) 65
BstBI TTCGAA 1 cut(s) 956
BstC8I GCNNGC 3 cut(s) 1110, 1306, 1536
BstDSI CCRYGG 1 cut(s) 1070
BstF5I GGATG 5 cut(s) 694, 925, 980, 1211, 1273
BstH2I RGCGCY 2 cut(s) 68, 738
BstHHI GCGC 2 cut(s) 67, 737
BstKTI GATC 5 cut(s) 310, 877, 938, 1387, 1581
BstMAI GTCTC 2 cut(s) 431, 1275
BstMBI GATC 5 cut(s) 307, 874, 935, 1384, 1578
BstMWI GCNNNNNNNGC 8 cut(s) 155, 158, 564, 656, 716, 722, 1050, 1544
BstNI CCWGG 1 cut(s) 1050
BstNSI RCATGY 1 cut(s) 679
BstSCI CCNGG 3 cut(s) 1048, 1177, 1556
BstSFI CTRYAG 1 cut(s) 1545
BstV2I GAAGAC 2 cut(s) 243, 327
BstX2I RGATCY 1 cut(s) 1578
BstXI CCANNNNNNTGG 3 cut(s) 55, 932, 1161
BstYI RGATCY 1 cut(s) 1578
BstZ17I GTATAC 1 cut(s) 989
Bsu36I CCTNAGG 1 cut(s) 1264
BsuRI GGCC 2 cut(s) 78, 1063
BtgI CCRYGG 1 cut(s) 1070
BtsCI GGATG 5 cut(s) 694, 925, 980, 1211, 1273
BtsI GCAGTG 1 cut(s) 276
BtsIMutI CAGTG 5 cut(s) 276, 765, 1091, 1170, 1228
Cac8I GCNNGC 3 cut(s) 1110, 1306, 1536
CciI TCATGA 2 cut(s) 603, 1583
CfoI GCGC 2 cut(s) 67, 737
Cfr13I GGNCC 3 cut(s) 1089, 1175, 1247
Csp6I GTAC 4 cut(s) 869, 1037, 1193, 1236
CviQI GTAC 4 cut(s) 869, 1037, 1193, 1236
DinI GGCGCC 1 cut(s) 66
DpnI GATC 5 cut(s) 309, 876, 937, 1386, 1580
DpnII GATC 5 cut(s) 307, 874, 935, 1384, 1578
EaeI YGGCCR 1 cut(s) 76
Eam1104I CTCTTC 3 cut(s) 41, 855, 1314
EarI CTCTTC 3 cut(s) 41, 855, 1314
EciI GGCGGA 1 cut(s) 1095
Ecl136II GAGCTC 1 cut(s) 1407
Eco130I CCWWGG 3 cut(s) 1058, 1070, 1488
Eco24I GRGCYC 1 cut(s) 1409
Eco31I GGTCTC 1 cut(s) 431
Eco47I GGWCC 3 cut(s) 1089, 1175, 1247
Eco53kI GAGCTC 1 cut(s) 1407
Eco57I CTGAAG 4 cut(s) 255, 378, 485, 836
Eco81I CCTNAGG 1 cut(s) 1264
EcoICRI GAGCTC 1 cut(s) 1407
EcoRI GAATTC 3 cut(s) 272, 885, 958
EcoRII CCWGG 1 cut(s) 1048
EcoT14I CCWWGG 3 cut(s) 1058, 1070, 1488
EcoT38I GRGCYC 1 cut(s) 1409
EgeI GGCGCC 1 cut(s) 66
EheI GGCGCC 1 cut(s) 66
ErhI CCWWGG 3 cut(s) 1058, 1070, 1488
Esp3I CGTCTC 1 cut(s) 1275
FaqI GGGAC 3 cut(s) 477, 1301, 1506
FauI CCCGC 2 cut(s) 111, 563
FbaI TGATCA 1 cut(s) 874
FblI GTMKAC 1 cut(s) 988
FokI GGATG 5 cut(s) 701, 932, 987, 1198, 1260
FriOI GRGCYC 1 cut(s) 1409
FspBI CTAG 1 cut(s) 1389
GlaI GCGC 2 cut(s) 66, 736
GsuI CTGGAG 1 cut(s) 927
HaeII RGCGCY 2 cut(s) 68, 738
HaeIII GGCC 2 cut(s) 78, 1063
HapII CCGG 4 cut(s) 165, 594, 1179, 1558
HhaI GCGC 2 cut(s) 67, 737
Hin1I GRCGYC 1 cut(s) 65
Hin6I GCGC 2 cut(s) 65, 735
HinP1I GCGC 2 cut(s) 65, 735
HincII GTYRAC 1 cut(s) 133
HindII GTYRAC 1 cut(s) 133
HindIII AAGCTT 2 cut(s) 203, 1018
HpaII CCGG 4 cut(s) 165, 594, 1179, 1558
HphI GGTGA 1 cut(s) 1071
Hpy166II GTNNAC 4 cut(s) 133, 989, 1006, 1089
Hpy188III TCNNGA 4 cut(s) 348, 604, 1432, 1584
Hpy8I GTNNAC 4 cut(s) 133, 989, 1006, 1089
Hpy99I CGWCG 2 cut(s) 349, 636
HpyAV CCTTC 1 cut(s) 906
HpyCH4III ACNGT 4 cut(s) 575, 769, 1013, 1232
HpyCH4IV ACGT 2 cut(s) 543, 1370
HpyCH4V TGCA 9 cut(s) 567, 978, 1097, 1112, 1151, 1170, 1400, 1534, 1547
HpyF10VI GCNNNNNNNGC 8 cut(s) 155, 158, 564, 656, 716, 722, 1050, 1544
HpySE526I ACGT 2 cut(s) 543, 1370
Hsp92I GRCGYC 1 cut(s) 65
HspAI GCGC 2 cut(s) 65, 735
KasI GGCGCC 1 cut(s) 64
Ksp22I TGATCA 1 cut(s) 874
Kzo9I GATC 5 cut(s) 307, 874, 935, 1384, 1578
LguI GCTCTTC 1 cut(s) 41
LmnI GCTCC 3 cut(s) 113, 623, 1058
LweI GCATC 3 cut(s) 679, 965, 1437
MaeI CTAG 1 cut(s) 1389
MaeII ACGT 2 cut(s) 543, 1370
MaeIII GTNAC 4 cut(s) 524, 671, 946, 1560
MalI GATC 5 cut(s) 309, 876, 937, 1386, 1580
MboI GATC 5 cut(s) 307, 874, 935, 1384, 1578
MflI RGATCY 1 cut(s) 1578
MhlI GDGCHC 1 cut(s) 1409
MluCI AATT 8 cut(s) 272, 311, 351, 885, 958, 1201, 1252, 1447
Mly113I GGCGCC 1 cut(s) 65
MlyI GAGTC 4 cut(s) 116, 128, 454, 1331
MmeI TCCRAC 5 cut(s) 113, 144, 359, 666, 770
MseI TTAA 2 cut(s) 680, 1373
MslI CAYNNNNRTG 2 cut(s) 680, 1084
MspA1I CMGCKG 2 cut(s) 380, 1001
MspI CCGG 4 cut(s) 165, 594, 1179, 1558
MspR9I CCNGG 3 cut(s) 1050, 1179, 1558
Mva1269I GAATGC 1 cut(s) 1112
MvaI CCWGG 1 cut(s) 1050
MwoI GCNNNNNNNGC 8 cut(s) 155, 158, 564, 656, 716, 722, 1050, 1544
NarI GGCGCC 1 cut(s) 65
NciI CCSGG 2 cut(s) 1179, 1558
NcoI CCATGG 1 cut(s) 1070
NdeII GATC 5 cut(s) 307, 874, 935, 1384, 1578
NlaIV GGNNCC 5 cut(s) 66, 87, 894, 1054, 1177
NmeAIII GCCGAG 1 cut(s) 856
NmuCI GTSAC 2 cut(s) 671, 1560
NspI RCATGY 1 cut(s) 679
NspV TTCGAA 1 cut(s) 956
OliI CACNNNNGTG 1 cut(s) 1084
PagI TCATGA 2 cut(s) 603, 1583
PciI ACATGT 1 cut(s) 675
PciSI GCTCTTC 1 cut(s) 41
PctI GAATGC 1 cut(s) 1112
PfeI GAWTC 6 cut(s) 361, 600, 788, 803, 1360, 1484
PleI GAGTC 4 cut(s) 116, 128, 454, 1330
PluTI GGCGCC 1 cut(s) 68
PpsI GAGTC 4 cut(s) 116, 128, 454, 1330
PscI ACATGT 1 cut(s) 675
Psp124BI GAGCTC 1 cut(s) 1409
Psp1406I AACGTT 1 cut(s) 1370
Psp6I CCWGG 1 cut(s) 1048
PspGI CCWGG 1 cut(s) 1048
PspN4I GGNNCC 5 cut(s) 66, 87, 894, 1054, 1177
PspPI GGNCC 3 cut(s) 1089, 1175, 1247
PstI CTGCAG 1 cut(s) 1549
PsuI RGATCY 1 cut(s) 1578
PvuII CAGCTG 1 cut(s) 380
RsaI GTAC 4 cut(s) 870, 1038, 1194, 1237
RsaNI GTAC 4 cut(s) 869, 1037, 1193, 1236
RseI CAYNNNNRTG 2 cut(s) 680, 1084
SacI GAGCTC 1 cut(s) 1409
SapI GCTCTTC 1 cut(s) 41
SaqAI TTAA 2 cut(s) 680, 1373
Sau3AI GATC 5 cut(s) 307, 874, 935, 1384, 1578
Sau96I GGNCC 3 cut(s) 1089, 1175, 1247
SchI GAGTC 4 cut(s) 116, 128, 454, 1331
ScrFI CCNGG 3 cut(s) 1050, 1179, 1558
SduI GDGCHC 1 cut(s) 1409
SfaNI GCATC 3 cut(s) 679, 965, 1437
SfcI CTRYAG 1 cut(s) 1545
SfoI GGCGCC 1 cut(s) 66
SfuI TTCGAA 1 cut(s) 956
SinI GGWCC 3 cut(s) 1089, 1175, 1247
SmiMI CAYNNNNRTG 2 cut(s) 680, 1084
Sse9I AATT 8 cut(s) 272, 311, 351, 885, 958, 1201, 1252, 1447
SsiI CCGC 4 cut(s) 104, 556, 1001, 1106
SspDI GGCGCC 1 cut(s) 64
SspMI CTAG 1 cut(s) 1389
SstI GAGCTC 1 cut(s) 1409
StyD4I CCNGG 3 cut(s) 1048, 1177, 1556
StyI CCWWGG 3 cut(s) 1058, 1070, 1488
TaaI ACNGT 4 cut(s) 575, 769, 1013, 1232
TaiI ACGT 2 cut(s) 546, 1373
TaqI TCGA 1 cut(s) 956
TasI AATT 8 cut(s) 272, 311, 351, 885, 958, 1201, 1252, 1447
TfiI GAWTC 6 cut(s) 361, 600, 788, 803, 1360, 1484
Tru1I TTAA 2 cut(s) 680, 1373
Tru9I TTAA 2 cut(s) 680, 1373
TscAI CASTG 5 cut(s) 283, 772, 1091, 1177, 1235
TseFI GTSAC 2 cut(s) 671, 1560
Tsp45I GTSAC 2 cut(s) 671, 1560
TspDTI ATGAA 5 cut(s) 27, 642, 854, 951, 1452
TspGWI ACGGA 1 cut(s) 1562
TspRI CASTG 5 cut(s) 283, 772, 1091, 1177, 1235
VpaK11BI GGWCC 3 cut(s) 1089, 1175, 1247
XapI RAATTY 5 cut(s) 272, 885, 958, 1252, 1447
XceI RCATGY 1 cut(s) 679
XcmI CCANNNNNNNNNTGG 1 cut(s) 1056
XmiI GTMKAC 1 cut(s) 988
XspI CTAG 1 cut(s) 1389
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.