Cyclic dof factor
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT5G39660 AT5G39660 AT5G39660 |
| fragaria_vesca | FvH4_4g31210 FvH4_6g48270 FvH4_6g48270 |
| malus_domestica | MD00G1125100.v1.1 MD13G1070600.v1.1 MD16G1071400.v1.1 |
| prunus_persica | Prupe.1G276000_v2.0.a1 Prupe.3G266200_v2.0.a1 |
| pyrus_communis | pycom111g04390 pycom13g06340 pycom16g06180 pycom17g04800 |
| rosa_chinensis | RchiOBHm_Chr2g0167771 RchiOBHm_Chr4g0439611 |
| rosa_laevigata | RLG00000006255 RLG00000021752 |
| rosa_multiflora | Rmu_sc0002549.1_g000020 |
| rosa_roxburghii | Rroxscaffold_2G00083270 Rroxscaffold_5G00380530 |
| rosa_rugosa | Rorug02G0532000 Rorug04G0320000 |
| rosa_samantha | Rh2AG600900 Rh2BG611600 Rh2CG581800 Rh2DG624000 Rh4AG371200 Rh4BG382900 Rh4CG397500 Rh4DG377700 |
| rosa_wichuraiana | Rw2G049900 Rw4G031640 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 1063 |
| AatII | GACGTC | 1 cut(s) | 598 |
| Acc36I | ACCTGC | 2 cut(s) | 937, 1063 |
| AccB1I | GGYRCC | 3 cut(s) | 52, 1000, 1267 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 113, 1187 |
| AciI | CCGC | 5 cut(s) | 275, 460, 732, 1154, 1401 |
| AclWI | GGATC | 2 cut(s) | 98, 111 |
| AcoI | YGGCCR | 1 cut(s) | 1007 |
| AcsI | RAATTY | 3 cut(s) | 373, 610, 907 |
| AcuI | CTGAAG | 7 cut(s) | 195, 405, 449, 666, 681, 846, 1479 |
| AcyI | GRCGYC | 2 cut(s) | 595, 1001 |
| AfaI | GTAC | 3 cut(s) | 715, 802, 1013 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 113, 1187, 1208, 1432 |
| AgsI | TTSAA | 4 cut(s) | 128, 379, 906, 912 |
| AjnI | CCWGG | 3 cut(s) | 994, 1016, 1069 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 467, 499 |
| Alw21I | GWGCWC | 3 cut(s) | 94, 1040, 1235 |
| Alw26I | GTCTC | 3 cut(s) | 186, 395, 646 |
| AlwI | GGATC | 2 cut(s) | 98, 111 |
| Ama87I | CYCGRG | 1 cut(s) | 1330 |
| AoxI | GGCC | 2 cut(s) | 1007, 1419 |
| ApeKI | GCWGC | 4 cut(s) | 1097, 1100, 1340, 1490 |
| ApoI | RAATTY | 3 cut(s) | 373, 610, 907 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 1216 |
| AspLEI | GCGC | 3 cut(s) | 742, 1003, 1130 |
| AspS9I | GGNCC | 5 cut(s) | 16, 61, 145, 564, 1190 |
| AsuC2I | CCSGG | 3 cut(s) | 520, 1331, 1332 |
| AsuHPI | GGTGA | 6 cut(s) | 307, 333, 680, 764, 1442, 1448 |
| AsuII | TTCGAA | 1 cut(s) | 881 |
| AvaI | CYCGRG | 1 cut(s) | 1330 |
| AvaII | GGWCC | 5 cut(s) | 16, 61, 145, 564, 1190 |
| BamHI | GGATCC | 1 cut(s) | 103 |
| BanI | GGYRCC | 3 cut(s) | 52, 1000, 1267 |
| BanII | GRGCYC | 2 cut(s) | 94, 1040 |
| BbsI | GAAGAC | 2 cut(s) | 47, 386 |
| Bbv12I | GWGCWC | 3 cut(s) | 94, 1040, 1235 |
| BbvI | GCAGC | 4 cut(s) | 1109, 1112, 1327, 1502 |
| BccI | CCATC | 4 cut(s) | 115, 260, 699, 1165 |
| BceAI | ACGGC | 1 cut(s) | 994 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 34, 68 |
| BciT130I | CCWGG | 3 cut(s) | 996, 1018, 1071 |
| BciVI | GTATCC | 1 cut(s) | 469 |
| BclI | TGATCA | 1 cut(s) | 874 |
| BcnI | CCSGG | 3 cut(s) | 520, 1331, 1332 |
| BcoDI | GTCTC | 3 cut(s) | 186, 395, 646 |
| BfaI | CTAG | 1 cut(s) | 1500 |
| BfmI | CTRYAG | 3 cut(s) | 363, 891, 1095 |
| BfoI | RGCGCY | 2 cut(s) | 1004, 1131 |
| BfuAI | ACCTGC | 2 cut(s) | 937, 1063 |
| BfuI | GTATCC | 1 cut(s) | 469 |
| BglII | AGATCT | 1 cut(s) | 887 |
| BisI | GCNGC | 4 cut(s) | 1098, 1101, 1341, 1491 |
| BlsI | GCNGC | 4 cut(s) | 1099, 1102, 1342, 1492 |
| Bme1390I | CCNGG | 6 cut(s) | 520, 996, 1018, 1071, 1331, 1332 |
| Bme18I | GGWCC | 5 cut(s) | 16, 61, 145, 564, 1190 |
| BmeT110I | CYCGRG | 1 cut(s) | 1330 |
| BmgT120I | GGNCC | 5 cut(s) | 16, 61, 145, 564, 1190 |
| BmiI | GGNNCC | 8 cut(s) | 18, 54, 63, 105, 118, 565, 1002, 1269 |
| BmrFI | CCNGG | 6 cut(s) | 520, 996, 1018, 1071, 1331, 1332 |
| BmrI | ACTGGG | 2 cut(s) | 942, 1376 |
| BmsI | GCATC | 3 cut(s) | 323, 727, 1283 |
| BmuI | ACTGGG | 2 cut(s) | 942, 1376 |
| BpiI | GAAGAC | 2 cut(s) | 47, 386 |
| BpmI | CTGGAG | 2 cut(s) | 1026, 1053 |
| Bpu14I | TTCGAA | 1 cut(s) | 881 |
| BpuMI | CCSGG | 3 cut(s) | 520, 1331, 1332 |
| BsaHI | GRCGYC | 2 cut(s) | 595, 1001 |
| BsaJI | CCNNGG | 7 cut(s) | 518, 995, 1004, 1016, 1142, 1206, 1330 |
| BsaWI | WCCGGW | 3 cut(s) | 49, 100, 1468 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 113, 1187, 1208, 1432 |
| Bse1I | ACTGG | 3 cut(s) | 937, 1043, 1371 |
| Bse3DI | GCAATG | 1 cut(s) | 657 |
| BseBI | CCWGG | 3 cut(s) | 996, 1018, 1071 |
| BseDI | CCNNGG | 7 cut(s) | 518, 995, 1004, 1016, 1142, 1206, 1330 |
| BseGI | GGATG | 4 cut(s) | 691, 742, 922, 1231 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 113, 1187, 1208, 1432 |
| BseMI | GCAATG | 1 cut(s) | 657 |
| BseMII | CTCAG | 2 cut(s) | 1245, 1278 |
| BseNI | ACTGG | 3 cut(s) | 937, 1043, 1371 |
| BseRI | GAGGAG | 1 cut(s) | 1277 |
| BseXI | GCAGC | 4 cut(s) | 1109, 1112, 1327, 1502 |
| BseYI | CCCAGC | 1 cut(s) | 19 |
| BsgI | GTGCAG | 1 cut(s) | 609 |
| Bsh1285I | CGRYCG | 1 cut(s) | 87 |
| BshFI | GGCC | 2 cut(s) | 1009, 1421 |
| BshNI | GGYRCC | 3 cut(s) | 52, 1000, 1267 |
| BsiEI | CGRYCG | 1 cut(s) | 87 |
| BsiHKAI | GWGCWC | 3 cut(s) | 94, 1040, 1235 |
| BsiHKCI | CYCGRG | 1 cut(s) | 1330 |
| BsiSI | CCGG | 7 cut(s) | 50, 56, 75, 101, 520, 1331, 1469 |
| BslFI | GGGAC | 3 cut(s) | 47, 577, 1422 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 113, 1187, 1208, 1432 |
| BsmAI | GTCTC | 3 cut(s) | 186, 395, 646 |
| BsmFI | GGGAC | 3 cut(s) | 47, 577, 1422 |
| BsmI | GAATGC | 2 cut(s) | 364, 664 |
| BsnI | GGCC | 2 cut(s) | 1009, 1421 |
| BsoBI | CYCGRG | 1 cut(s) | 1330 |
| Bsp119I | TTCGAA | 1 cut(s) | 881 |
| Bsp1286I | GDGCHC | 3 cut(s) | 94, 1040, 1235 |
| Bsp143I | GATC | 5 cut(s) | 24, 103, 139, 874, 887 |
| BspACI | CCGC | 5 cut(s) | 275, 460, 732, 1154, 1401 |
| BspANI | GGCC | 2 cut(s) | 1009, 1421 |
| BspCNI | CTCAG | 2 cut(s) | 1246, 1279 |
| BspLI | GGNNCC | 8 cut(s) | 18, 54, 63, 105, 118, 565, 1002, 1269 |
| BspMAI | CTGCAG | 1 cut(s) | 1099 |
| BspMI | ACCTGC | 2 cut(s) | 937, 1063 |
| BspPI | GGATC | 2 cut(s) | 98, 111 |
| BspT104I | TTCGAA | 1 cut(s) | 881 |
| BspT107I | GGYRCC | 3 cut(s) | 52, 1000, 1267 |
| BsrDI | GCAATG | 1 cut(s) | 657 |
| BsrI | ACTGG | 3 cut(s) | 937, 1043, 1371 |
| BssECI | CCNNGG | 7 cut(s) | 518, 995, 1004, 1016, 1142, 1206, 1330 |
| BssMI | GATC | 5 cut(s) | 24, 103, 139, 874, 887 |
| BssNI | GRCGYC | 2 cut(s) | 595, 1001 |
| BssT1I | CCWWGG | 3 cut(s) | 1004, 1142, 1206 |
| Bst2UI | CCWGG | 3 cut(s) | 996, 1018, 1071 |
| Bst4CI | ACNGT | 7 cut(s) | 136, 367, 640, 718, 800, 895, 1237 |
| Bst6I | CTCTTC | 5 cut(s) | 160, 172, 195, 285, 1254 |
| BstACI | GRCGYC | 2 cut(s) | 595, 1001 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 537, 952 |
| BstBI | TTCGAA | 1 cut(s) | 881 |
| BstC8I | GCNNGC | 1 cut(s) | 925 |
| BstDEI | CTNAG | 3 cut(s) | 1254, 1287, 1397 |
| BstF5I | GGATG | 4 cut(s) | 691, 742, 922, 1231 |
| BstH2I | RGCGCY | 2 cut(s) | 1004, 1131 |
| BstHHI | GCGC | 3 cut(s) | 742, 1003, 1130 |
| BstKTI | GATC | 5 cut(s) | 27, 106, 142, 877, 890 |
| BstMAI | GTCTC | 3 cut(s) | 186, 395, 646 |
| BstMBI | GATC | 5 cut(s) | 24, 103, 139, 874, 887 |
| BstMCI | CGRYCG | 1 cut(s) | 87 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 468, 537, 952, 1153, 1487 |
| BstNI | CCWGG | 3 cut(s) | 996, 1018, 1071 |
| BstNSI | RCATGY | 1 cut(s) | 927 |
| BstSCI | CCNGG | 6 cut(s) | 518, 994, 1016, 1069, 1329, 1330 |
| BstSFI | CTRYAG | 3 cut(s) | 363, 891, 1095 |
| BstV1I | GCAGC | 4 cut(s) | 1109, 1112, 1327, 1502 |
| BstV2I | GAAGAC | 2 cut(s) | 47, 386 |
| BstX2I | RGATCY | 2 cut(s) | 103, 887 |
| BstYI | RGATCY | 2 cut(s) | 103, 887 |
| BsuI | GTATCC | 1 cut(s) | 469 |
| BsuRI | GGCC | 2 cut(s) | 1009, 1421 |
| BtsCI | GGATG | 4 cut(s) | 691, 742, 922, 1231 |
| BtsIMutI | CAGTG | 3 cut(s) | 900, 1233, 1364 |
| BveI | ACCTGC | 2 cut(s) | 937, 1063 |
| Cac8I | GCNNGC | 1 cut(s) | 925 |
| CfoI | GCGC | 3 cut(s) | 742, 1003, 1130 |
| Cfr13I | GGNCC | 5 cut(s) | 16, 61, 145, 564, 1190 |
| Cfr9I | CCCGGG | 1 cut(s) | 1330 |
| Csp6I | GTAC | 3 cut(s) | 714, 801, 1012 |
| CviAII | CATG | 6 cut(s) | 149, 453, 472, 568, 924, 987 |
| CviQI | GTAC | 3 cut(s) | 714, 801, 1012 |
| DdeI | CTNAG | 3 cut(s) | 1254, 1287, 1397 |
| DinI | GGCGCC | 1 cut(s) | 1002 |
| DpnI | GATC | 5 cut(s) | 26, 105, 141, 876, 889 |
| DpnII | GATC | 5 cut(s) | 24, 103, 139, 874, 887 |
| EaeI | YGGCCR | 1 cut(s) | 1007 |
| Eam1104I | CTCTTC | 5 cut(s) | 160, 172, 195, 285, 1254 |
| EarI | CTCTTC | 5 cut(s) | 160, 172, 195, 285, 1254 |
| Ecl136II | GAGCTC | 2 cut(s) | 92, 1038 |
| Eco130I | CCWWGG | 3 cut(s) | 1004, 1142, 1206 |
| Eco147I | AGGCCT | 1 cut(s) | 1421 |
| Eco24I | GRGCYC | 2 cut(s) | 94, 1040 |
| Eco47I | GGWCC | 5 cut(s) | 16, 61, 145, 564, 1190 |
| Eco53kI | GAGCTC | 2 cut(s) | 92, 1038 |
| Eco57I | CTGAAG | 7 cut(s) | 195, 405, 449, 666, 681, 846, 1479 |
| Eco88I | CYCGRG | 1 cut(s) | 1330 |
| EcoICRI | GAGCTC | 2 cut(s) | 92, 1038 |
| EcoO109I | RGGNCCY | 2 cut(s) | 16, 61 |
| EcoRI | GAATTC | 1 cut(s) | 610 |
| EcoRII | CCWGG | 3 cut(s) | 994, 1016, 1069 |
| EcoT14I | CCWWGG | 3 cut(s) | 1004, 1142, 1206 |
| EcoT38I | GRGCYC | 2 cut(s) | 94, 1040 |
| EgeI | GGCGCC | 1 cut(s) | 1002 |
| EheI | GGCGCC | 1 cut(s) | 1002 |
| ErhI | CCWWGG | 3 cut(s) | 1004, 1142, 1206 |
| FaeI | CATG | 6 cut(s) | 152, 456, 475, 571, 927, 990 |
| FaqI | GGGAC | 3 cut(s) | 47, 577, 1422 |
| FatI | CATG | 6 cut(s) | 148, 452, 471, 567, 923, 986 |
| FauI | CCCGC | 3 cut(s) | 282, 467, 725 |
| FbaI | TGATCA | 1 cut(s) | 874 |
| Fnu4HI | GCNGC | 4 cut(s) | 1098, 1101, 1341, 1491 |
| FokI | GGATG | 4 cut(s) | 678, 749, 929, 1238 |
| FriOI | GRGCYC | 2 cut(s) | 94, 1040 |
| Fsp4HI | GCNGC | 4 cut(s) | 1098, 1101, 1341, 1491 |
| FspBI | CTAG | 1 cut(s) | 1500 |
| GlaI | GCGC | 3 cut(s) | 741, 1002, 1129 |
| GluI | GCNGC | 4 cut(s) | 1098, 1101, 1341, 1491 |
| GsaI | CCCAGC | 1 cut(s) | 23 |
| GsuI | CTGGAG | 2 cut(s) | 1026, 1053 |
| HaeII | RGCGCY | 2 cut(s) | 1004, 1131 |
| HaeIII | GGCC | 2 cut(s) | 1009, 1421 |
| HapII | CCGG | 7 cut(s) | 50, 56, 75, 101, 520, 1331, 1469 |
| HhaI | GCGC | 3 cut(s) | 742, 1003, 1130 |
| Hin1I | GRCGYC | 2 cut(s) | 595, 1001 |
| Hin1II | CATG | 6 cut(s) | 152, 456, 475, 571, 927, 990 |
| Hin6I | GCGC | 3 cut(s) | 740, 1001, 1128 |
| HinP1I | GCGC | 3 cut(s) | 740, 1001, 1128 |
| HincII | GTYRAC | 1 cut(s) | 511 |
| HindII | GTYRAC | 1 cut(s) | 511 |
| HindIII | AAGCTT | 2 cut(s) | 29, 1461 |
| HpaII | CCGG | 7 cut(s) | 50, 56, 75, 101, 520, 1331, 1469 |
| HphI | GGTGA | 6 cut(s) | 307, 333, 680, 764, 1442, 1448 |
| Hpy166II | GTNNAC | 4 cut(s) | 331, 511, 688, 803 |
| Hpy188I | TCNGA | 9 cut(s) | 7, 89, 289, 600, 646, 678, 819, 1203, 1255 |
| Hpy188III | TCNNGA | 7 cut(s) | 37, 95, 114, 143, 234, 305, 318 |
| Hpy8I | GTNNAC | 4 cut(s) | 331, 511, 688, 803 |
| Hpy99I | CGWCG | 1 cut(s) | 600 |
| HpyAV | CCTTC | 5 cut(s) | 346, 705, 779, 821, 1432 |
| HpyCH4III | ACNGT | 7 cut(s) | 136, 367, 640, 718, 800, 895, 1237 |
| HpyCH4IV | ACGT | 2 cut(s) | 507, 595 |
| HpyCH4V | TGCA | 8 cut(s) | 250, 531, 590, 927, 955, 1097, 1123, 1343 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 468, 537, 952, 1153, 1487 |
| HpyF3I | CTNAG | 3 cut(s) | 1254, 1287, 1397 |
| HpySE526I | ACGT | 2 cut(s) | 507, 595 |
| Hsp92I | GRCGYC | 2 cut(s) | 595, 1001 |
| Hsp92II | CATG | 6 cut(s) | 152, 456, 475, 571, 927, 990 |
| HspAI | GCGC | 3 cut(s) | 740, 1001, 1128 |
| KasI | GGCGCC | 1 cut(s) | 1000 |
| Ksp22I | TGATCA | 1 cut(s) | 874 |
| Kzo9I | GATC | 5 cut(s) | 24, 103, 139, 874, 887 |
| LmnI | GCTCC | 5 cut(s) | 77, 89, 97, 1035, 1183 |
| Lsp1109I | GCAGC | 4 cut(s) | 1109, 1112, 1327, 1502 |
| LweI | GCATC | 3 cut(s) | 323, 727, 1283 |
| MaeI | CTAG | 1 cut(s) | 1500 |
| MaeII | ACGT | 2 cut(s) | 507, 595 |
| MaeIII | GTNAC | 6 cut(s) | 295, 488, 895, 936, 1045, 1503 |
| MalI | GATC | 5 cut(s) | 26, 105, 141, 876, 889 |
| MboI | GATC | 5 cut(s) | 24, 103, 139, 874, 887 |
| MflI | RGATCY | 2 cut(s) | 103, 887 |
| MhlI | GDGCHC | 3 cut(s) | 94, 1040, 1235 |
| MluCI | AATT | 6 cut(s) | 373, 409, 499, 610, 907, 1510 |
| Mly113I | GGCGCC | 1 cut(s) | 1001 |
| MlyI | GAGTC | 1 cut(s) | 1404 |
| MmeI | TCCRAC | 5 cut(s) | 67, 186, 578, 1226, 1450 |
| MroXI | GAANNNNTTC | 1 cut(s) | 1216 |
| MseI | TTAA | 4 cut(s) | 68, 833, 1374, 1416 |
| MspA1I | CMGCKG | 2 cut(s) | 462, 557 |
| MspI | CCGG | 7 cut(s) | 50, 56, 75, 101, 520, 1331, 1469 |
| MspR9I | CCNGG | 6 cut(s) | 520, 996, 1018, 1071, 1331, 1332 |
| Mva1269I | GAATGC | 2 cut(s) | 364, 664 |
| MvaI | CCWGG | 3 cut(s) | 996, 1018, 1071 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 468, 537, 952, 1153, 1487 |
| NarI | GGCGCC | 1 cut(s) | 1001 |
| NciI | CCSGG | 3 cut(s) | 520, 1331, 1332 |
| NdeII | GATC | 5 cut(s) | 24, 103, 139, 874, 887 |
| NlaIII | CATG | 6 cut(s) | 152, 456, 475, 571, 927, 990 |
| NlaIV | GGNNCC | 8 cut(s) | 18, 54, 63, 105, 118, 565, 1002, 1269 |
| NmuCI | GTSAC | 4 cut(s) | 295, 895, 936, 1503 |
| NspI | RCATGY | 1 cut(s) | 927 |
| NspV | TTCGAA | 1 cut(s) | 881 |
| PaeI | GCATGC | 1 cut(s) | 927 |
| PaqCI | CACCTGC | 1 cut(s) | 1063 |
| PceI | AGGCCT | 1 cut(s) | 1421 |
| PctI | GAATGC | 2 cut(s) | 364, 664 |
| PdmI | GAANNNNTTC | 1 cut(s) | 1216 |
| PfeI | GAWTC | 9 cut(s) | 46, 80, 270, 752, 838, 902, 1303, 1391, 1447 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 113, 1187 |
| PkrI | GCNGC | 4 cut(s) | 1099, 1102, 1342, 1492 |
| PleI | GAGTC | 1 cut(s) | 1404 |
| PluTI | GGCGCC | 1 cut(s) | 1004 |
| PpsI | GAGTC | 1 cut(s) | 1404 |
| PpuMI | RGGWCCY | 2 cut(s) | 16, 61 |
| Psp124BI | GAGCTC | 2 cut(s) | 94, 1040 |
| Psp5II | RGGWCCY | 2 cut(s) | 16, 61 |
| Psp6I | CCWGG | 3 cut(s) | 994, 1016, 1069 |
| PspFI | CCCAGC | 1 cut(s) | 19 |
| PspGI | CCWGG | 3 cut(s) | 994, 1016, 1069 |
| PspN4I | GGNNCC | 8 cut(s) | 18, 54, 63, 105, 118, 565, 1002, 1269 |
| PspPI | GGNCC | 5 cut(s) | 16, 61, 145, 564, 1190 |
| PspPPI | RGGWCCY | 2 cut(s) | 16, 61 |
| PstI | CTGCAG | 1 cut(s) | 1099 |
| PsuI | RGATCY | 2 cut(s) | 103, 887 |
| PvuII | CAGCTG | 1 cut(s) | 557 |
| RsaI | GTAC | 3 cut(s) | 715, 802, 1013 |
| RsaNI | GTAC | 3 cut(s) | 714, 801, 1012 |
| SacI | GAGCTC | 2 cut(s) | 94, 1040 |
| SaqAI | TTAA | 4 cut(s) | 68, 833, 1374, 1416 |
| SatI | GCNGC | 4 cut(s) | 1098, 1101, 1341, 1491 |
| Sau3AI | GATC | 5 cut(s) | 24, 103, 139, 874, 887 |
| Sau96I | GGNCC | 5 cut(s) | 16, 61, 145, 564, 1190 |
| SchI | GAGTC | 1 cut(s) | 1404 |
| ScrFI | CCNGG | 6 cut(s) | 520, 996, 1018, 1071, 1331, 1332 |
| SduI | GDGCHC | 3 cut(s) | 94, 1040, 1235 |
| SfaNI | GCATC | 3 cut(s) | 323, 727, 1283 |
| SfcI | CTRYAG | 3 cut(s) | 363, 891, 1095 |
| SfoI | GGCGCC | 1 cut(s) | 1002 |
| SfuI | TTCGAA | 1 cut(s) | 881 |
| SinI | GGWCC | 5 cut(s) | 16, 61, 145, 564, 1190 |
| SmaI | CCCGGG | 1 cut(s) | 1332 |
| SphI | GCATGC | 1 cut(s) | 927 |
| Sse9I | AATT | 6 cut(s) | 373, 409, 499, 610, 907, 1510 |
| SseBI | AGGCCT | 1 cut(s) | 1421 |
| SsiI | CCGC | 5 cut(s) | 275, 460, 732, 1154, 1401 |
| SspDI | GGCGCC | 1 cut(s) | 1000 |
| SspMI | CTAG | 1 cut(s) | 1500 |
| SstI | GAGCTC | 2 cut(s) | 94, 1040 |
| StuI | AGGCCT | 1 cut(s) | 1421 |
| StyD4I | CCNGG | 6 cut(s) | 518, 994, 1016, 1069, 1329, 1330 |
| StyI | CCWWGG | 3 cut(s) | 1004, 1142, 1206 |
| TaaI | ACNGT | 7 cut(s) | 136, 367, 640, 718, 800, 895, 1237 |
| TaiI | ACGT | 2 cut(s) | 510, 598 |
| TaqI | TCGA | 4 cut(s) | 138, 317, 881, 1220 |
| TaqII | GACCGA | 1 cut(s) | 73 |
| TasI | AATT | 6 cut(s) | 373, 409, 499, 610, 907, 1510 |
| TfiI | GAWTC | 9 cut(s) | 46, 80, 270, 752, 838, 902, 1303, 1391, 1447 |
| Tru1I | TTAA | 4 cut(s) | 68, 833, 1374, 1416 |
| Tru9I | TTAA | 4 cut(s) | 68, 833, 1374, 1416 |
| TscAI | CASTG | 3 cut(s) | 900, 1240, 1371 |
| TseFI | GTSAC | 4 cut(s) | 295, 895, 936, 1503 |
| TseI | GCWGC | 4 cut(s) | 1097, 1100, 1340, 1490 |
| Tsp45I | GTSAC | 4 cut(s) | 295, 895, 936, 1503 |
| TspDTI | ATGAA | 1 cut(s) | 1515 |
| TspMI | CCCGGG | 1 cut(s) | 1330 |
| TspRI | CASTG | 3 cut(s) | 900, 1240, 1371 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 113, 1187 |
| VpaK11BI | GGWCC | 5 cut(s) | 16, 61, 145, 564, 1190 |
| XapI | RAATTY | 3 cut(s) | 373, 610, 907 |
| XceI | RCATGY | 1 cut(s) | 927 |
| XmaI | CCCGGG | 1 cut(s) | 1330 |
| XmnI | GAANNNNTTC | 1 cut(s) | 1216 |
| XspI | CTAG | 1 cut(s) | 1500 |
| ZraI | GACGTC | 1 cut(s) | 596 |