Cyclic dof factor
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT5G39660 AT5G39660 AT5G39660 |
| fragaria_vesca | FvH4_4g31210 FvH4_6g48270 FvH4_6g48270 |
| malus_domestica | MD00G1125100.v1.1 MD13G1070600.v1.1 MD16G1071400.v1.1 |
| prunus_persica | Prupe.1G276000_v2.0.a1 Prupe.3G266200_v2.0.a1 |
| pyrus_communis | pycom111g04390 pycom13g06340 pycom16g06180 pycom17g04800 |
| rosa_chinensis | RchiOBHm_Chr2g0167771 RchiOBHm_Chr4g0439611 |
| rosa_laevigata | RLG00000006255 RLG00000021752 |
| rosa_multiflora | Rmu_sc0002549.1_g000020 |
| rosa_roxburghii | Rroxscaffold_2G00083270 Rroxscaffold_5G00380530 |
| rosa_rugosa | Rorug02G0532000 Rorug04G0320000 |
| rosa_samantha | Rh2AG600900 Rh2BG611600 Rh2CG581800 Rh2DG624000 Rh4AG371200 Rh4BG382900 Rh4CG397500 Rh4DG377700 |
| rosa_wichuraiana | Rw2G049900 Rw4G031640 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 306 |
| AciI | CCGC | 2 cut(s) | 237, 246 |
| AcsI | RAATTY | 1 cut(s) | 340 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 59, 159 |
| AgsI | TTSAA | 4 cut(s) | 10, 41, 182, 203 |
| AoxI | GGCC | 1 cut(s) | 161 |
| ApeKI | GCWGC | 1 cut(s) | 132 |
| ApoI | RAATTY | 1 cut(s) | 340 |
| BbvI | GCAGC | 1 cut(s) | 144 |
| BccI | CCATC | 2 cut(s) | 148, 299 |
| BfaI | CTAG | 2 cut(s) | 14, 45 |
| BfmI | CTRYAG | 1 cut(s) | 130 |
| BfuAI | ACCTGC | 1 cut(s) | 306 |
| BisI | GCNGC | 1 cut(s) | 133 |
| BlsI | GCNGC | 1 cut(s) | 134 |
| BmiI | GGNNCC | 1 cut(s) | 51 |
| BmsI | GCATC | 1 cut(s) | 178 |
| Bsa29I | ATCGAT | 1 cut(s) | 21 |
| BsaJI | CCNNGG | 1 cut(s) | 158 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 59, 159 |
| BseCI | ATCGAT | 1 cut(s) | 21 |
| BseDI | CCNNGG | 1 cut(s) | 158 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 59, 159 |
| BseMII | CTCAG | 1 cut(s) | 347 |
| BseXI | GCAGC | 1 cut(s) | 144 |
| Bsh1285I | CGRYCG | 1 cut(s) | 25 |
| BshFI | GGCC | 1 cut(s) | 163 |
| BshVI | ATCGAT | 1 cut(s) | 21 |
| BsiEI | CGRYCG | 1 cut(s) | 25 |
| BslFI | GGGAC | 1 cut(s) | 238 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 59, 159 |
| BsmFI | GGGAC | 1 cut(s) | 238 |
| BsnI | GGCC | 1 cut(s) | 163 |
| Bsp143I | GATC | 1 cut(s) | 22 |
| BspACI | CCGC | 2 cut(s) | 237, 246 |
| BspANI | GGCC | 1 cut(s) | 163 |
| BspCNI | CTCAG | 1 cut(s) | 346 |
| BspDI | ATCGAT | 1 cut(s) | 21 |
| BspLI | GGNNCC | 1 cut(s) | 51 |
| BspMAI | CTGCAG | 1 cut(s) | 134 |
| BspMI | ACCTGC | 1 cut(s) | 306 |
| BssECI | CCNNGG | 1 cut(s) | 158 |
| BssMI | GATC | 1 cut(s) | 22 |
| BssT1I | CCWWGG | 1 cut(s) | 158 |
| Bst4CI | ACNGT | 1 cut(s) | 34 |
| BstDEI | CTNAG | 2 cut(s) | 211, 333 |
| BstKTI | GATC | 1 cut(s) | 25 |
| BstMBI | GATC | 1 cut(s) | 22 |
| BstMCI | CGRYCG | 1 cut(s) | 25 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 101, 118, 245 |
| BstSFI | CTRYAG | 1 cut(s) | 130 |
| BstV1I | GCAGC | 1 cut(s) | 144 |
| Bsu15I | ATCGAT | 1 cut(s) | 21 |
| BsuRI | GGCC | 1 cut(s) | 163 |
| BsuTUI | ATCGAT | 1 cut(s) | 21 |
| BveI | ACCTGC | 1 cut(s) | 306 |
| ClaI | ATCGAT | 1 cut(s) | 21 |
| CviJI | RGCY | 2 cut(s) | 163, 328 |
| CviKI_1 | RGCY | 2 cut(s) | 163, 328 |
| DdeI | CTNAG | 2 cut(s) | 211, 333 |
| DpnI | GATC | 1 cut(s) | 24 |
| DpnII | GATC | 1 cut(s) | 22 |
| Eco130I | CCWWGG | 1 cut(s) | 158 |
| Eco147I | AGGCCT | 1 cut(s) | 163 |
| EcoT14I | CCWWGG | 1 cut(s) | 158 |
| ErhI | CCWWGG | 1 cut(s) | 158 |
| FaiI | YATR | 2 cut(s) | 274, 349 |
| FaqI | GGGAC | 1 cut(s) | 238 |
| FauI | CCCGC | 2 cut(s) | 244, 253 |
| Fnu4HI | GCNGC | 1 cut(s) | 133 |
| Fsp4HI | GCNGC | 1 cut(s) | 133 |
| FspBI | CTAG | 2 cut(s) | 14, 45 |
| GluI | GCNGC | 1 cut(s) | 133 |
| HaeIII | GGCC | 1 cut(s) | 163 |
| HinfI | GANTC | 2 cut(s) | 97, 126 |
| Hpy188I | TCNGA | 1 cut(s) | 304 |
| Hpy188III | TCNNGA | 1 cut(s) | 14 |
| Hpy99I | CGWCG | 1 cut(s) | 261 |
| HpyCH4III | ACNGT | 1 cut(s) | 34 |
| HpyCH4V | TGCA | 5 cut(s) | 121, 132, 169, 197, 315 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 101, 118, 245 |
| HpyF3I | CTNAG | 2 cut(s) | 211, 333 |
| Kzo9I | GATC | 1 cut(s) | 22 |
| LpnPI | CCDG | 2 cut(s) | 90, 301 |
| Lsp1109I | GCAGC | 1 cut(s) | 144 |
| LweI | GCATC | 1 cut(s) | 178 |
| MaeI | CTAG | 2 cut(s) | 14, 45 |
| MalI | GATC | 1 cut(s) | 24 |
| MboI | GATC | 1 cut(s) | 22 |
| MboII | GAAGA | 2 cut(s) | 57, 135 |
| MfeI | CAATTG | 1 cut(s) | 185 |
| MluCI | AATT | 6 cut(s) | 185, 192, 198, 240, 310, 340 |
| MmeI | TCCRAC | 1 cut(s) | 173 |
| MnlI | CCTC | 3 cut(s) | 174, 218, 298 |
| MseI | TTAA | 1 cut(s) | 338 |
| MunI | CAATTG | 1 cut(s) | 185 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 101, 118, 245 |
| NdeII | GATC | 1 cut(s) | 22 |
| NlaIV | GGNNCC | 1 cut(s) | 51 |
| NmeAIII | GCCGAG | 1 cut(s) | 71 |
| PceI | AGGCCT | 1 cut(s) | 163 |
| PfeI | GAWTC | 2 cut(s) | 97, 126 |
| PkrI | GCNGC | 1 cut(s) | 134 |
| Ple19I | CGATCG | 1 cut(s) | 25 |
| PspN4I | GGNNCC | 1 cut(s) | 51 |
| PstI | CTGCAG | 1 cut(s) | 134 |
| PvuI | CGATCG | 1 cut(s) | 25 |
| SaqAI | TTAA | 1 cut(s) | 338 |
| SatI | GCNGC | 1 cut(s) | 133 |
| Sau3AI | GATC | 1 cut(s) | 22 |
| SetI | ASST | 1 cut(s) | 320 |
| SfaNI | GCATC | 1 cut(s) | 178 |
| SfcI | CTRYAG | 1 cut(s) | 130 |
| Sse9I | AATT | 6 cut(s) | 185, 192, 198, 240, 310, 340 |
| SseBI | AGGCCT | 1 cut(s) | 163 |
| SsiI | CCGC | 2 cut(s) | 237, 246 |
| SspMI | CTAG | 2 cut(s) | 14, 45 |
| StuI | AGGCCT | 1 cut(s) | 163 |
| StyI | CCWWGG | 1 cut(s) | 158 |
| TaaI | ACNGT | 1 cut(s) | 34 |
| TaqI | TCGA | 3 cut(s) | 21, 25, 68 |
| TasI | AATT | 6 cut(s) | 185, 192, 198, 240, 310, 340 |
| TfiI | GAWTC | 2 cut(s) | 97, 126 |
| Tru1I | TTAA | 1 cut(s) | 338 |
| Tru9I | TTAA | 1 cut(s) | 338 |
| TseI | GCWGC | 1 cut(s) | 132 |
| XapI | RAATTY | 1 cut(s) | 340 |
| XbaI | TCTAGA | 1 cut(s) | 13 |
| XspI | CTAG | 2 cut(s) | 14, 45 |