RchiOBHm_Chr2g0167771

Cyclic dof factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0003750
Physical Location & Seq
Reverse (-)
82138512 .. 82141812
3301 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ53553

Sequence Viewer

Length: 1530 bp
ATGTCGGAGGGGAGGGACCCGGCGATCAAGCTTTTCGGGAAGACGATTCCGCTGACGGAGGTCCCGCCGTTGCTGAGTGAATCCACCGTCCCGGCGGCAGAGGAAGTCGTCGCGGCTCCGGATCCGGGTTCGGATGCTGACCGTGTTTCGTCTTCGTCCAACTCGTCCTCGCCTGGAGGAGGAGGAGGAGAAGTCAATGATAATAAAGACGGTGAAGAAGAGAAAGAGGTCAATAAGGACACATTGGGAGAAAAAGCAATTCAGAATAAAGAGGGAGATGAAGTCCTACCTTTATCTTCTAAAGAGTTGATGAATCCAGACGCAGCATCAAGAATAGGTGAAAGTCCTAAAGCACCCGTTGACAAGGAGACTGCTGCACTCAAAACTTTGAAGGCCGAAGAAGAACAGAGCGAGACAAGTAATTCACAAGAAAAGACCCTGAAGAAGCCAGACAAAATTATTCCATGCCCCCGCTGTAATAGCATGGACACCAAGTTCTGTTACTACAACAACTACAATGTCAACCAACCCAGGCACTTCTGCAAAAACTGCCAGAGATATTGGACAGCTGGTGGGACTATGAGAAATGTGCCAGTGGGTGCTGGTCGTCGTAAGAATAAGAATACCCCTTCTCAGTATCGCCACATAACTGTCTCTGAAGCTCACCCGAATACTCGACCTGATGTTCACCATCCTTCAGTACAATCTAATGGCACTGTCCTGACATTTTGCTCAGACACGCCCCTTTGCGAGTCAATGACCTCTGTTCTTCAGCTTGCTGATAAGAACTTACAGAACCGTACTCCCAATGGATTTCACAAATCAGAAGGATTAGTTGTTCCAGCTTCTTATGGGGGCGGAGTAAATGGAGATGATCATTCGAATAGGTCTACGGTCACAGATTCAAATTCAAAGGACGAGACATCCAAACCGGGGCCACAAGAGCAAGTTATGCAGAATTATCCTGGCTTCCCGCCTCAAATACCATGCTTTCCTGGTGCTCCTTGGCCTTACCCGTGGAACCCTGCTCAATGGAGCTCTCCAGTAAGTCCACCTGCTTTCTGCCCTCCAGGGTATCCTATGCCCTTTTACCCTGCAGCCGCTTATTGGGGTTGTGCTGTACAAGGCACTTGGAACATGCCTTGGCTTCCTCAGCCATCATCTCCAAACCAAACTGCTCCAAGTTCTGGTTCTAACTCTCCGACTTTGGGGAAACATTCAAGGGATGAGAACCCTCTGAAACAAACCAGCTCTGAGGAAGAGGAGACAACAAAAGAAAAGAAGGCCGAGAGATGCCTTTGGATTCCGAAAACATTGAGGATTGATGACCCAGGAGAAGCAGCAAGAAGCTCTATATGGGCAACATTGGGGATTAAGAACGATAAAGCTGATTCGATTAGCAGTGGGGGACTCTTTAAGGCCTTCCGGTCGAAGGGTGATGAAAAGAATCACATAGCAGAAGCCTCTCCGGTCTTACAAGCCAATCCAGCTGCATTATCTAGGTCACTCAAGTTCCAAGAGAGCTCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-Dof

Protein Analysis

509

Amino Acids

55.19

Weight (kDa)

5.84

Isoelectric Point (pI)

57.94

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Zn_ribbon_Dof PF02701 152 - 208 1.2e-32 Dof domain, zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1063
Acc36I ACCTGC 1 cut(s) 1063
AccB7I CCANNNNNTGG 1 cut(s) 1187
AccI GTMKAC 1 cut(s) 890
AccII CGCG 1 cut(s) 113
AccIII TCCGGA 1 cut(s) 118
AciI CCGC 8 cut(s) 50, 65, 95, 113, 472, 858, 974, 1101
AclWI GGATC 2 cut(s) 116, 129
AcsI RAATTY 1 cut(s) 907
AcuI CTGAAG 4 cut(s) 461, 678, 681, 755
AfaI GTAC 3 cut(s) 702, 802, 1122
AfiI CCNNNNNNNGG 7 cut(s) 125, 179, 933, 1107, 1187, 1208, 1432
AgsI TTSAA 4 cut(s) 391, 906, 912, 1221
AjnI CCWGG 6 cut(s) 172, 530, 964, 994, 1069, 1330
AjuI GAANNNNNNNTTGG 2 cut(s) 1174, 1206
AloI GAACNNNNNNTCC 4 cut(s) 479, 511, 822, 854
Alw21I GWGCWC 3 cut(s) 1003, 1040, 1526
Alw26I GTCTC 5 cut(s) 362, 407, 658, 914, 1259
AlwI GGATC 2 cut(s) 116, 129
Aor13HI TCCGGA 1 cut(s) 118
AoxI GGCC 5 cut(s) 393, 935, 1007, 1284, 1419
ApeKI GCWGC 5 cut(s) 323, 374, 1097, 1340, 1490
ApoI RAATTY 1 cut(s) 907
AspS9I GGNCC 3 cut(s) 16, 61, 935
AsuC2I CCSGG 4 cut(s) 20, 92, 126, 933
AsuHPI GGTGA 5 cut(s) 224, 350, 656, 680, 1448
AsuII TTCGAA 1 cut(s) 881
AvaII GGWCC 2 cut(s) 16, 61
BamHI GGATCC 1 cut(s) 121
BanII GRGCYC 2 cut(s) 1040, 1526
BbsI GAAGAC 2 cut(s) 47, 144
Bbv12I GWGCWC 3 cut(s) 1003, 1040, 1526
BbvCI CCTCAGC 1 cut(s) 1152
BbvI GCAGC 5 cut(s) 335, 361, 1109, 1352, 1477
BccI CCATC 2 cut(s) 699, 1165
BceAI ACGGC 1 cut(s) 52
BciT130I CCWGG 6 cut(s) 174, 532, 966, 996, 1071, 1332
BciVI GTATCC 1 cut(s) 1086
BclI TGATCA 1 cut(s) 874
BcnI CCSGG 4 cut(s) 20, 92, 126, 933
BcoDI GTCTC 5 cut(s) 362, 407, 658, 914, 1259
BfaI CTAG 1 cut(s) 1500
BfmI CTRYAG 1 cut(s) 1095
BfuAI ACCTGC 1 cut(s) 1063
BfuI GTATCC 1 cut(s) 1086
BisI GCNGC 8 cut(s) 96, 114, 324, 375, 1098, 1101, 1341, 1491
BlsI GCNGC 8 cut(s) 97, 115, 325, 376, 1099, 1102, 1342, 1492
Bme18I GGWCC 2 cut(s) 16, 61
BmgT120I GGNCC 3 cut(s) 16, 61, 935
BmiI GGNNCC 7 cut(s) 17, 18, 63, 117, 123, 936, 1022
BmsI GCATC 3 cut(s) 124, 335, 1283
BoxI GACNNNNGTC 1 cut(s) 59
BpiI GAAGAC 2 cut(s) 47, 144
BpmI CTGGAG 3 cut(s) 195, 1026, 1053
Bpu10I CCTNAGC 1 cut(s) 1152
Bpu14I TTCGAA 1 cut(s) 881
BpuEI CTTGAG 1 cut(s) 1493
BpuMI CCSGG 4 cut(s) 20, 92, 126, 933
BsaJI CCNNGG 7 cut(s) 530, 932, 1004, 1016, 1070, 1142, 1330
BsaWI WCCGGW 3 cut(s) 118, 1425, 1468
BsaXI ACNNNNNCTCC 4 cut(s) 177, 207, 267, 297
Bsc4I CCNNNNNNNGG 7 cut(s) 125, 179, 933, 1107, 1187, 1208, 1432
Bse1I ACTGG 2 cut(s) 593, 1043
BseAI TCCGGA 1 cut(s) 118
BseBI CCWGG 6 cut(s) 174, 532, 966, 996, 1071, 1332
BseDI CCNNGG 7 cut(s) 530, 932, 1004, 1016, 1070, 1142, 1330
BseGI GGATG 4 cut(s) 139, 691, 923, 1231
BseLI CCNNNNNNNGG 7 cut(s) 125, 179, 933, 1107, 1187, 1208, 1432
BseMII CTCAG 5 cut(s) 65, 647, 747, 1166, 1245
BseNI ACTGG 2 cut(s) 593, 1043
BseRI GAGGAG 5 cut(s) 192, 195, 198, 201, 1277
BseXI GCAGC 5 cut(s) 335, 361, 1109, 1352, 1477
BsgI GTGCAG 1 cut(s) 360
Bsh1236I CGCG 1 cut(s) 113
Bsh1285I CGRYCG 1 cut(s) 1430
BshFI GGCC 5 cut(s) 395, 937, 1009, 1286, 1421
BsiEI CGRYCG 1 cut(s) 1430
BsiHKAI GWGCWC 3 cut(s) 1003, 1040, 1526
BsiSI CCGG 7 cut(s) 20, 92, 119, 125, 932, 1426, 1469
BslFI GGGAC 5 cut(s) 29, 47, 74, 589, 1422
BslI CCNNNNNNNGG 7 cut(s) 125, 179, 933, 1107, 1187, 1208, 1432
BsmAI GTCTC 5 cut(s) 362, 407, 658, 914, 1259
BsmFI GGGAC 5 cut(s) 29, 47, 74, 589, 1422
BsnI GGCC 5 cut(s) 395, 937, 1009, 1286, 1421
Bsp119I TTCGAA 1 cut(s) 881
Bsp1286I GDGCHC 3 cut(s) 1003, 1040, 1526
Bsp13I TCCGGA 1 cut(s) 118
Bsp1407I TGTACA 1 cut(s) 1120
Bsp143I GATC 3 cut(s) 24, 121, 874
BspACI CCGC 8 cut(s) 50, 65, 95, 113, 472, 858, 974, 1101
BspANI GGCC 5 cut(s) 395, 937, 1009, 1286, 1421
BspCNI CTCAG 5 cut(s) 66, 646, 746, 1165, 1246
BspEI TCCGGA 1 cut(s) 118
BspFNI CGCG 1 cut(s) 113
BspHI TCATGA 1 cut(s) 1526
BspLI GGNNCC 7 cut(s) 17, 18, 63, 117, 123, 936, 1022
BspMAI CTGCAG 1 cut(s) 1099
BspMI ACCTGC 1 cut(s) 1063
BspPI GGATC 2 cut(s) 116, 129
BspT104I TTCGAA 1 cut(s) 881
BsrGI TGTACA 1 cut(s) 1120
BsrI ACTGG 2 cut(s) 593, 1043
BssECI CCNNGG 7 cut(s) 530, 932, 1004, 1016, 1070, 1142, 1330
BssMI GATC 3 cut(s) 24, 121, 874
BssT1I CCWWGG 2 cut(s) 1004, 1142
Bst2UI CCWGG 6 cut(s) 174, 532, 966, 996, 1071, 1332
Bst4CI ACNGT 7 cut(s) 88, 143, 212, 652, 718, 800, 895
Bst6I CTCTTC 2 cut(s) 213, 1254
BstAPI GCANNNNNTGC 2 cut(s) 549, 952
BstAUI TGTACA 1 cut(s) 1120
BstBI TTCGAA 1 cut(s) 881
BstC8I GCNNGC 1 cut(s) 777
BstDEI CTNAG 5 cut(s) 74, 633, 733, 1152, 1254
BstDSI CCRYGG 1 cut(s) 1016
BstENI CCTNNNNNAGG 1 cut(s) 177
BstF5I GGATG 4 cut(s) 139, 691, 923, 1231
BstFNI CGCG 1 cut(s) 113
BstKTI GATC 3 cut(s) 27, 124, 877
BstMAI GTCTC 5 cut(s) 362, 407, 658, 914, 1259
BstMBI GATC 3 cut(s) 24, 121, 874
BstMCI CGRYCG 1 cut(s) 1430
BstMWI GCNNNNNNNGC 6 cut(s) 480, 549, 943, 952, 1153, 1487
BstNI CCWGG 6 cut(s) 174, 532, 966, 996, 1071, 1332
BstNSI RCATGY 1 cut(s) 1141
BstPAI GACNNNNGTC 1 cut(s) 59
BstSFI CTRYAG 1 cut(s) 1095
BstUI CGCG 1 cut(s) 113
BstV1I GCAGC 5 cut(s) 335, 361, 1109, 1352, 1477
BstV2I GAAGAC 2 cut(s) 47, 144
BstX2I RGATCY 1 cut(s) 121
BstYI RGATCY 1 cut(s) 121
BsuI GTATCC 1 cut(s) 1086
BsuRI GGCC 5 cut(s) 395, 937, 1009, 1286, 1421
BtgI CCRYGG 1 cut(s) 1016
BtsCI GGATG 4 cut(s) 139, 691, 923, 1231
BtsI GCAGTG 1 cut(s) 1408
BtsIMutI CAGTG 3 cut(s) 600, 714, 1408
BveI ACCTGC 1 cut(s) 1063
Cac8I GCNNGC 1 cut(s) 777
CciI TCATGA 1 cut(s) 1526
Cfr13I GGNCC 3 cut(s) 16, 61, 935
CseI GACGC 1 cut(s) 329
Csp6I GTAC 3 cut(s) 701, 801, 1121
CviAII CATG 5 cut(s) 465, 484, 987, 1138, 1527
CviQI GTAC 3 cut(s) 701, 801, 1121
DdeI CTNAG 5 cut(s) 74, 633, 733, 1152, 1254
DpnI GATC 3 cut(s) 26, 123, 876
DpnII GATC 3 cut(s) 24, 121, 874
Eam1104I CTCTTC 2 cut(s) 213, 1254
EarI CTCTTC 2 cut(s) 213, 1254
EciI GGCGGA 1 cut(s) 873
Ecl136II GAGCTC 2 cut(s) 1038, 1524
Eco130I CCWWGG 2 cut(s) 1004, 1142
Eco147I AGGCCT 1 cut(s) 1421
Eco24I GRGCYC 2 cut(s) 1040, 1526
Eco47I GGWCC 2 cut(s) 16, 61
Eco53kI GAGCTC 2 cut(s) 1038, 1524
Eco57I CTGAAG 4 cut(s) 461, 678, 681, 755
EcoICRI GAGCTC 2 cut(s) 1038, 1524
EcoNI CCTNNNNNAGG 1 cut(s) 177
EcoO109I RGGNCCY 2 cut(s) 16, 61
EcoRII CCWGG 6 cut(s) 172, 530, 964, 994, 1069, 1330
EcoT14I CCWWGG 2 cut(s) 1004, 1142
EcoT38I GRGCYC 2 cut(s) 1040, 1526
ErhI CCWWGG 2 cut(s) 1004, 1142
FaeI CATG 5 cut(s) 468, 487, 990, 1141, 1530
FaqI GGGAC 5 cut(s) 29, 47, 74, 589, 1422
FatI CATG 5 cut(s) 464, 483, 986, 1137, 1526
FauI CCCGC 3 cut(s) 72, 479, 981
FbaI TGATCA 1 cut(s) 874
FblI GTMKAC 1 cut(s) 890
Fnu4HI GCNGC 8 cut(s) 96, 114, 324, 375, 1098, 1101, 1341, 1491
FokI GGATG 4 cut(s) 146, 678, 910, 1238
FriOI GRGCYC 2 cut(s) 1040, 1526
Fsp4HI GCNGC 8 cut(s) 96, 114, 324, 375, 1098, 1101, 1341, 1491
FspBI CTAG 1 cut(s) 1500
GluI GCNGC 8 cut(s) 96, 114, 324, 375, 1098, 1101, 1341, 1491
GsuI CTGGAG 3 cut(s) 195, 1026, 1053
HaeIII GGCC 5 cut(s) 395, 937, 1009, 1286, 1421
HapII CCGG 7 cut(s) 20, 92, 119, 125, 932, 1426, 1469
HgaI GACGC 1 cut(s) 329
Hin1II CATG 5 cut(s) 468, 487, 990, 1141, 1530
HincII GTYRAC 2 cut(s) 361, 523
HindII GTYRAC 2 cut(s) 361, 523
HindIII AAGCTT 1 cut(s) 29
HinfI GANTC 9 cut(s) 46, 80, 313, 752, 902, 1303, 1391, 1410, 1447
HpaII CCGG 7 cut(s) 20, 92, 119, 125, 932, 1426, 1469
HphI GGTGA 5 cut(s) 224, 350, 656, 680, 1448
Hpy166II GTNNAC 5 cut(s) 361, 523, 688, 891, 1052
Hpy188III TCNNGA 6 cut(s) 37, 119, 317, 330, 721, 1527
Hpy8I GTNNAC 5 cut(s) 361, 523, 688, 891, 1052
Hpy99I CGWCG 2 cut(s) 113, 612
HpyAV CCTTC 7 cut(s) 385, 639, 705, 821, 1276, 1426, 1432
HpyCH4III ACNGT 7 cut(s) 88, 143, 212, 652, 718, 800, 895
HpyCH4V TGCA 5 cut(s) 377, 543, 955, 1097, 1493
HpyF10VI GCNNNNNNNGC 6 cut(s) 480, 549, 943, 952, 1153, 1487
HpyF3I CTNAG 5 cut(s) 74, 633, 733, 1152, 1254
Hsp92II CATG 5 cut(s) 468, 487, 990, 1141, 1530
KflI GGGWCCC 1 cut(s) 16
Kpn2I TCCGGA 1 cut(s) 118
Ksp22I TGATCA 1 cut(s) 874
Kzo9I GATC 3 cut(s) 24, 121, 874
LmnI GCTCC 4 cut(s) 121, 1006, 1035, 1183
Lsp1109I GCAGC 5 cut(s) 335, 361, 1109, 1352, 1477
LweI GCATC 3 cut(s) 124, 335, 1283
MaeI CTAG 1 cut(s) 1500
MaeIII GTNAC 3 cut(s) 500, 895, 1503
MalI GATC 3 cut(s) 26, 123, 876
MboI GATC 3 cut(s) 24, 121, 874
MflI RGATCY 1 cut(s) 121
MhlI GDGCHC 3 cut(s) 1003, 1040, 1526
MluCI AATT 5 cut(s) 258, 421, 456, 907, 958
MlyI GAGTC 2 cut(s) 761, 1404
MmeI TCCRAC 2 cut(s) 183, 1226
MroI TCCGGA 1 cut(s) 118
MseI TTAA 2 cut(s) 1374, 1416
MspA1I CMGCKG 4 cut(s) 52, 474, 569, 1490
MspI CCGG 7 cut(s) 20, 92, 119, 125, 932, 1426, 1469
MvaI CCWGG 6 cut(s) 174, 532, 966, 996, 1071, 1332
MvnI CGCG 1 cut(s) 113
MwoI GCNNNNNNNGC 6 cut(s) 480, 549, 943, 952, 1153, 1487
NciI CCSGG 4 cut(s) 20, 92, 126, 933
NdeII GATC 3 cut(s) 24, 121, 874
NlaIII CATG 5 cut(s) 468, 487, 990, 1141, 1530
NlaIV GGNNCC 7 cut(s) 17, 18, 63, 117, 123, 936, 1022
NmeAIII GCCGAG 1 cut(s) 1312
NmuCI GTSAC 2 cut(s) 895, 1503
NspI RCATGY 1 cut(s) 1141
NspV TTCGAA 1 cut(s) 881
PagI TCATGA 1 cut(s) 1526
PaqCI CACCTGC 1 cut(s) 1063
PceI AGGCCT 1 cut(s) 1421
PcsI WCGNNNNNNNCGW 1 cut(s) 161
PfeI GAWTC 7 cut(s) 46, 80, 313, 902, 1303, 1391, 1447
PflMI CCANNNNNTGG 1 cut(s) 1187
PkrI GCNGC 8 cut(s) 97, 115, 325, 376, 1099, 1102, 1342, 1492
PleI GAGTC 2 cut(s) 760, 1404
PpsI GAGTC 2 cut(s) 760, 1404
PpuMI RGGWCCY 2 cut(s) 16, 61
PshAI GACNNNNGTC 1 cut(s) 59
Psp124BI GAGCTC 2 cut(s) 1040, 1526
Psp5II RGGWCCY 2 cut(s) 16, 61
Psp6I CCWGG 6 cut(s) 172, 530, 964, 994, 1069, 1330
PspGI CCWGG 6 cut(s) 172, 530, 964, 994, 1069, 1330
PspN4I GGNNCC 7 cut(s) 17, 18, 63, 117, 123, 936, 1022
PspPI GGNCC 3 cut(s) 16, 61, 935
PspPPI RGGWCCY 2 cut(s) 16, 61
PstI CTGCAG 1 cut(s) 1099
PsuI RGATCY 1 cut(s) 121
PvuII CAGCTG 2 cut(s) 569, 1490
RsaI GTAC 3 cut(s) 702, 802, 1122
RsaNI GTAC 3 cut(s) 701, 801, 1121
SacI GAGCTC 2 cut(s) 1040, 1526
SaqAI TTAA 2 cut(s) 1374, 1416
SatI GCNGC 8 cut(s) 96, 114, 324, 375, 1098, 1101, 1341, 1491
Sau3AI GATC 3 cut(s) 24, 121, 874
Sau96I GGNCC 3 cut(s) 16, 61, 935
SchI GAGTC 2 cut(s) 761, 1404
SduI GDGCHC 3 cut(s) 1003, 1040, 1526
SfaNI GCATC 3 cut(s) 124, 335, 1283
SfcI CTRYAG 1 cut(s) 1095
SfuI TTCGAA 1 cut(s) 881
SinI GGWCC 2 cut(s) 16, 61
SmlI CTYRAG 1 cut(s) 1508
SmoI CTYRAG 1 cut(s) 1508
Sse9I AATT 5 cut(s) 258, 421, 456, 907, 958
SseBI AGGCCT 1 cut(s) 1421
SsiI CCGC 8 cut(s) 50, 65, 95, 113, 472, 858, 974, 1101
SspMI CTAG 1 cut(s) 1500
SstI GAGCTC 2 cut(s) 1040, 1526
StuI AGGCCT 1 cut(s) 1421
StyI CCWWGG 2 cut(s) 1004, 1142
TaaI ACNGT 7 cut(s) 88, 143, 212, 652, 718, 800, 895
TaqI TCGA 4 cut(s) 676, 881, 1394, 1430
TasI AATT 5 cut(s) 258, 421, 456, 907, 958
TatI WGTACW 2 cut(s) 700, 1120
TauI GCSGC 3 cut(s) 98, 116, 1103
TfiI GAWTC 7 cut(s) 46, 80, 313, 902, 1303, 1391, 1447
Tru1I TTAA 2 cut(s) 1374, 1416
Tru9I TTAA 2 cut(s) 1374, 1416
TscAI CASTG 3 cut(s) 600, 721, 1408
TseFI GTSAC 2 cut(s) 895, 1503
TseI GCWGC 5 cut(s) 323, 374, 1097, 1340, 1490
Tsp45I GTSAC 2 cut(s) 895, 1503
TspDTI ATGAA 3 cut(s) 294, 326, 1455
TspGWI ACGGA 1 cut(s) 71
TspRI CASTG 3 cut(s) 600, 721, 1408
Van91I CCANNNNNTGG 1 cut(s) 1187
VpaK11BI GGWCC 2 cut(s) 16, 61
XagI CCTNNNNNAGG 1 cut(s) 177
XapI RAATTY 1 cut(s) 907
XceI RCATGY 1 cut(s) 1141
XmiI GTMKAC 1 cut(s) 890
XspI CTAG 1 cut(s) 1500
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.