AT5G41990

Serine threonine-protein kinase

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
Physical Location & Seq
Reverse (-)
16794967 .. 16798006
3040 bp
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UTR
Exon/CDS
Intron
AT5G41990.1

Sequence Viewer

Length: 1692 bp
ATGGCTTCTGGTTCTGGATTTTTAGGTCAGATATCGTCCATGGAAGAGGCTGATTTTGCCGAGAAAGATCCTTCTGGCCGTTACATCAGGTATGATGATGTTCTGGGGAGAGGAGCTTTCAAGACTGTATATAAGGCGTTTGACGAAGTAGACGGGATTGAAGTTGCTTGGAACCTAGTTAGCATTGAAGATGTAATGCAGATGCCTGGTCAACTTGAAAGGCTATATTCTGAAGTTCATCTACTAAAGGCTCTAAAACATGAAAACATCATCAAACTCTTTTACTCTTGGGTTGACGAAAAGAACAAGACTATTAACATGATCACTGAGCTTTTCACCTCTGGTAGTCTCAGGGTATATCGTAAGAAGCATAGGAAGGTTGATCCCAAGGCCATCAAGAACTGGGCAAGGCAGATTCTCAAAGGCCTGAACTATTTGCATTCTCAGAACCCTCCGGTAATTCACCGGGATCTGAAGTGTGACAATATATTTGTCAATGGAAATACTGGAGAGGTCAAAATCGGAGATCTCGGGCTCGCAACTGTACTGCAGCAGCCCACTGCTCGAAGTGTGATAGGTACTCCTGAATTCATGGCACCTGAACTGTATGAAGAGGAATACAATGAGCTTGTGGACATCTATTCTTTTGGCATGTGTATGTTGGAGATGGTAACCTGTGAATATCCATACAACGAGTGCAGAAACCAGGCTCAAATTTATAAAAAGGTCACCTCGAACATAAAGCCTCAGTCTCTTGGCAAAGTTGACGATCCTCAAGTTAGGCAATTTATAGAGAAATGTCTTCTTCCTGCCTCTTCCAGACCAACTGCCCTCGAGCTCTCGAAGGACCCATTCCTTGCAAGGGATGGAGGCAAGGACTCTGCTCTGCTTGCTTCATCAAGCACATCATCTAAATATGTGAGACCACCACAGCTTGAACATCTTCCCATGGATGTGGATCATAACGAGAATAAAAGTGTTTCAAGCAACGAAGACTACCCATGGTCCCAAACCATTGAACTTCAGAGGATTGCAGAGAATAAAGAGTTCAGGTTGAGAGGTGAGAGGAGCGATGATGTCACAGCGTCTATGGTTCTCCGTATTGCTGACCCGTCTGGTAAATGTAGAATCGTACACTTTGCATTCTATCTGGAGTCAGACACAGCAACAGCAATCGCTGAGGAAATGGTTGAGGAACTGCATTTAACTAGCCAAGAGGTCGTTGTGATAGCTGATATGATCGATGACTTCATAATGCAACTTCTCTCTGACCGGACCTCGTCGCATCATAACCAAAACTCTCCACGTCTAACCCATGAGGATCATGAAGCAGCAAATCAGCAAACTGTGAACTCGAAAGATGAAGAAGCTGCAGGACAATCAATGAAGTCAGACATATCAGCAGACTATTACTTTCCCTACTCAGCAAACGACGGAAATGCTGCCATGGAAGCTGGTCGAGATGCAGAGTCGATGAGCTCGTATCTGGATTCTTGCTCAATGATGTCAACCATTTACAATCTTTCCATTTCAGACAATGATTACCCAGAAGATCTCAAGACAGAACTAAACCTGATCGAGTCACAGTTTAACCAGTCCTTCCAAGATCTGCTGAAACTGAAAGAGGATGCAATAGAGAACGCTAAGCGAAAATGGATTACGAAAAAGCAAAAAGCAGTTAACATCTCTTGA

Protein Analysis

563

Amino Acids

63.8

Weight (kDa)

5.01

Isoelectric Point (pI)

45.86

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PK_Tyr_Ser-Thr PF07714 30 - 280 2e-36 Protein tyrosine and serine/threonine kinase
Pkinase PF00069 33 - 286 7e-52 Protein kinase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 720
AccB1I GGYRCC 1 cut(s) 595
AccI GTMKAC 1 cut(s) 150
AclWI GGATC 6 cut(s) 62, 377, 477, 764, 966, 1329
AcoI YGGCCR 1 cut(s) 76
AcsI RAATTY 2 cut(s) 587, 714
AcuI CTGAAG 3 cut(s) 252, 494, 1007
AfaI GTAC 3 cut(s) 546, 580, 1134
AfiI CCNNNNNNNGG 1 cut(s) 862
AgsI TTSAA 7 cut(s) 121, 161, 188, 218, 938, 984, 1019
AjiI CACGTC 1 cut(s) 1307
AjnI CCWGG 2 cut(s) 205, 705
AluBI AGCT 9 cut(s) 116, 331, 628, 838, 934, 1232, 1370, 1454, 1479
AluI AGCT 9 cut(s) 116, 331, 628, 838, 934, 1232, 1370, 1454, 1479
Alw21I GWGCWC 2 cut(s) 840, 1481
Alw26I GTCTC 3 cut(s) 353, 756, 916
AlwI GGATC 6 cut(s) 62, 377, 477, 764, 966, 1329
Ama87I CYCGRG 2 cut(s) 530, 833
AoxI GGCC 3 cut(s) 76, 390, 424
ApeKI GCWGC 5 cut(s) 550, 553, 1331, 1370, 1442
ApoI RAATTY 2 cut(s) 587, 714
ArsI GACNNNNNNTTYG 2 cut(s) 473, 505
Asp700I GAANNNNTTC 1 cut(s) 942
AspS9I GGNCC 3 cut(s) 847, 1005, 1275
AsuC2I CCSGG 1 cut(s) 467
AsuHPI GGTGA 4 cut(s) 328, 455, 721, 1073
AvaI CYCGRG 2 cut(s) 530, 833
AvaII GGWCC 3 cut(s) 847, 1005, 1275
BanI GGYRCC 1 cut(s) 595
BanII GRGCYC 3 cut(s) 537, 840, 1481
BarI GAAGNNNNNNTAC 2 cut(s) 225, 257
BbsI GAAGAC 2 cut(s) 794, 999
Bbv12I GWGCWC 2 cut(s) 840, 1481
BbvCI CCTCAGC 1 cut(s) 1179
BbvI GCAGC 5 cut(s) 562, 565, 1343, 1357, 1429
BccI CCATC 3 cut(s) 401, 661, 860
BceAI ACGGC 1 cut(s) 63
BcgI CGANNNNNNTGC 2 cut(s) 1421, 1455
BciT130I CCWGG 2 cut(s) 207, 707
BclI TGATCA 1 cut(s) 321
BcnI CCSGG 1 cut(s) 467
BcoDI GTCTC 3 cut(s) 353, 756, 916
BfaI CTAG 2 cut(s) 176, 1209
BfmI CTRYAG 2 cut(s) 548, 1371
BglII AGATCT 3 cut(s) 526, 1552, 1606
BisI GCNGC 5 cut(s) 551, 554, 1332, 1371, 1443
BlpI GCTNAGC 1 cut(s) 1644
BlsI GCNGC 5 cut(s) 552, 555, 1333, 1372, 1444
Bme1390I CCNGG 3 cut(s) 207, 467, 707
Bme18I GGWCC 3 cut(s) 847, 1005, 1275
BmeT110I CYCGRG 2 cut(s) 530, 833
BmgBI CACGTC 1 cut(s) 1307
BmgT120I GGNCC 3 cut(s) 847, 1005, 1275
BmiI GGNNCC 4 cut(s) 173, 597, 849, 1007
BmrFI CCNGG 3 cut(s) 207, 467, 707
BmrI ACTGGG 1 cut(s) 412
BmsI GCATC 4 cut(s) 192, 1294, 1453, 1618
BmuI ACTGGG 1 cut(s) 412
BpiI GAAGAC 2 cut(s) 794, 999
BpmI CTGGAG 2 cut(s) 528, 1172
Bpu10I CCTNAGC 1 cut(s) 1179
Bpu1102I GCTNAGC 1 cut(s) 1644
BpuEI CTTGAG 2 cut(s) 759, 1541
BpuMI CCSGG 1 cut(s) 467
Bsa29I ATCGAT 1 cut(s) 1242
BsaBI GATNNNNATC 1 cut(s) 957
BsaI GGTCTC 1 cut(s) 916
BsaJI CCNNGG 5 cut(s) 39, 387, 948, 1001, 1446
BsaWI WCCGGW 2 cut(s) 454, 1272
Bsc4I CCNNNNNNNGG 1 cut(s) 862
Bse1I ACTGG 3 cut(s) 407, 511, 1594
Bse8I GATNNNNATC 1 cut(s) 957
BseBI CCWGG 2 cut(s) 207, 707
BseCI ATCGAT 1 cut(s) 1242
BseDI CCNNGG 5 cut(s) 39, 387, 948, 1001, 1446
BseGI GGATG 3 cut(s) 871, 958, 1633
BseJI GATNNNNATC 1 cut(s) 957
BseLI CCNNNNNNNGG 1 cut(s) 862
BseMII CTCAG 6 cut(s) 318, 364, 458, 761, 1170, 1437
BseNI ACTGG 3 cut(s) 407, 511, 1594
BseRI GAGGAG 2 cut(s) 126, 1081
BseXI GCAGC 5 cut(s) 562, 565, 1343, 1357, 1429
BsgI GTGCAG 1 cut(s) 718
BshFI GGCC 3 cut(s) 78, 392, 426
BshNI GGYRCC 1 cut(s) 595
BshVI ATCGAT 1 cut(s) 1242
BsiHKAI GWGCWC 2 cut(s) 840, 1481
BsiHKCI CYCGRG 2 cut(s) 530, 833
BsiSI CCGG 3 cut(s) 455, 466, 1273
BslFI GGGAC 1 cut(s) 991
BslI CCNNNNNNNGG 1 cut(s) 862
BsmAI GTCTC 3 cut(s) 353, 756, 916
BsmFI GGGAC 1 cut(s) 991
BsmI GAATGC 2 cut(s) 439, 1142
BsnI GGCC 3 cut(s) 78, 392, 426
Bso31I GGTCTC 1 cut(s) 916
BsoBI CYCGRG 2 cut(s) 530, 833
Bsp1286I GDGCHC 3 cut(s) 537, 840, 1481
Bsp1720I GCTNAGC 1 cut(s) 1644
Bsp19I CCATGG 4 cut(s) 39, 948, 1001, 1446
BspANI GGCC 3 cut(s) 78, 392, 426
BspCNI CTCAG 6 cut(s) 319, 363, 457, 760, 1171, 1436
BspDI ATCGAT 1 cut(s) 1242
BspHI TCATGA 1 cut(s) 1324
BspLI GGNNCC 4 cut(s) 173, 597, 849, 1007
BspMAI CTGCAG 2 cut(s) 552, 1375
BspPI GGATC 6 cut(s) 62, 377, 477, 764, 966, 1329
BspT107I GGYRCC 1 cut(s) 595
BspTNI GGTCTC 1 cut(s) 916
BsrI ACTGG 3 cut(s) 407, 511, 1594
BssECI CCNNGG 5 cut(s) 39, 387, 948, 1001, 1446
BssT1I CCWWGG 5 cut(s) 39, 387, 948, 1001, 1446
Bst2UI CCWGG 2 cut(s) 207, 707
Bst4CI ACNGT 5 cut(s) 127, 544, 606, 1348, 1587
Bst6I CTCTTC 3 cut(s) 39, 606, 820
BstC8I GCNNGC 2 cut(s) 537, 891
BstDEI CTNAG 7 cut(s) 327, 350, 444, 747, 1179, 1423, 1644
BstDSI CCRYGG 4 cut(s) 39, 948, 1001, 1446
BstEII GGTNACC 2 cut(s) 670, 727
BstF5I GGATG 3 cut(s) 871, 958, 1633
BstMAI GTCTC 3 cut(s) 353, 756, 916
BstMWI GCNNNNNNNGC 3 cut(s) 56, 890, 1451
BstNI CCWGG 2 cut(s) 207, 707
BstNSI RCATGY 1 cut(s) 655
BstPI GGTNACC 2 cut(s) 670, 727
BstSCI CCNGG 3 cut(s) 205, 465, 705
BstSFI CTRYAG 2 cut(s) 548, 1371
BstV1I GCAGC 5 cut(s) 562, 565, 1343, 1357, 1429
BstV2I GAAGAC 2 cut(s) 794, 999
BstX2I RGATCY 5 cut(s) 67, 469, 526, 1552, 1606
BstXI CCANNNNNNTGG 1 cut(s) 955
BstYI RGATCY 5 cut(s) 67, 469, 526, 1552, 1606
Bsu15I ATCGAT 1 cut(s) 1242
BsuRI GGCC 3 cut(s) 78, 392, 426
BsuTUI ATCGAT 1 cut(s) 1242
BtgI CCRYGG 4 cut(s) 39, 948, 1001, 1446
BtgZI GCGATG 1 cut(s) 1086
BtrI CACGTC 1 cut(s) 1307
BtsCI GGATG 3 cut(s) 871, 958, 1633
BtsI GCAGTG 1 cut(s) 558
BtsIMutI CAGTG 2 cut(s) 324, 558
Cac8I GCNNGC 2 cut(s) 537, 891
CciI TCATGA 1 cut(s) 1324
Cfr13I GGNCC 3 cut(s) 847, 1005, 1275
ClaI ATCGAT 1 cut(s) 1242
CseI GACGC 1 cut(s) 1074
Csp6I GTAC 3 cut(s) 545, 579, 1133
CviQI GTAC 3 cut(s) 545, 579, 1133
DdeI CTNAG 7 cut(s) 327, 350, 444, 747, 1179, 1423, 1644
EaeI YGGCCR 1 cut(s) 76
Eam1104I CTCTTC 3 cut(s) 39, 606, 820
EarI CTCTTC 3 cut(s) 39, 606, 820
Ecl136II GAGCTC 2 cut(s) 838, 1479
Eco130I CCWWGG 5 cut(s) 39, 387, 948, 1001, 1446
Eco147I AGGCCT 1 cut(s) 426
Eco24I GRGCYC 3 cut(s) 537, 840, 1481
Eco31I GGTCTC 1 cut(s) 916
Eco32I GATATC 1 cut(s) 33
Eco47I GGWCC 3 cut(s) 847, 1005, 1275
Eco53kI GAGCTC 2 cut(s) 838, 1479
Eco57I CTGAAG 3 cut(s) 252, 494, 1007
Eco88I CYCGRG 2 cut(s) 530, 833
Eco91I GGTNACC 2 cut(s) 670, 727
EcoICRI GAGCTC 2 cut(s) 838, 1479
EcoO109I RGGNCCY 1 cut(s) 847
EcoO65I GGTNACC 2 cut(s) 670, 727
EcoRI GAATTC 1 cut(s) 587
EcoRII CCWGG 2 cut(s) 205, 705
EcoRV GATATC 1 cut(s) 33
EcoT14I CCWWGG 5 cut(s) 39, 387, 948, 1001, 1446
EcoT38I GRGCYC 3 cut(s) 537, 840, 1481
ErhI CCWWGG 5 cut(s) 39, 387, 948, 1001, 1446
FaqI GGGAC 1 cut(s) 991
FbaI TGATCA 1 cut(s) 321
FblI GTMKAC 1 cut(s) 150
Fnu4HI GCNGC 5 cut(s) 551, 554, 1332, 1371, 1443
FokI GGATG 3 cut(s) 878, 965, 1640
FriOI GRGCYC 3 cut(s) 537, 840, 1481
Fsp4HI GCNGC 5 cut(s) 551, 554, 1332, 1371, 1443
FspBI CTAG 2 cut(s) 176, 1209
GluI GCNGC 5 cut(s) 551, 554, 1332, 1371, 1443
GsuI CTGGAG 2 cut(s) 528, 1172
HaeIII GGCC 3 cut(s) 78, 392, 426
HapII CCGG 3 cut(s) 455, 466, 1273
HgaI GACGC 1 cut(s) 1074
HincII GTYRAC 5 cut(s) 212, 295, 766, 1509, 1681
HindII GTYRAC 5 cut(s) 212, 295, 766, 1509, 1681
HinfI GANTC 7 cut(s) 415, 878, 1128, 1154, 1469, 1490, 1580
HpaI GTTAAC 1 cut(s) 1681
HpaII CCGG 3 cut(s) 455, 466, 1273
HphI GGTGA 4 cut(s) 328, 455, 721, 1073
Hpy166II GTNNAC 9 cut(s) 151, 212, 295, 634, 766, 1135, 1351, 1509, 1681
Hpy8I GTNNAC 9 cut(s) 151, 212, 295, 634, 766, 1135, 1351, 1509, 1681
Hpy99I CGWCG 2 cut(s) 1285, 1436
HpyAV CCTTC 4 cut(s) 81, 370, 838, 1609
HpyCH4III ACNGT 5 cut(s) 127, 544, 606, 1348, 1587
HpyCH4IV ACGT 1 cut(s) 1306
HpyF10VI GCNNNNNNNGC 3 cut(s) 56, 890, 1451
HpyF3I CTNAG 7 cut(s) 327, 350, 444, 747, 1179, 1423, 1644
HpySE526I ACGT 1 cut(s) 1306
Ksp22I TGATCA 1 cut(s) 321
KspAI GTTAAC 1 cut(s) 1681
LmnI GCTCC 2 cut(s) 113, 1068
Lsp1109I GCAGC 5 cut(s) 562, 565, 1343, 1357, 1429
LweI GCATC 4 cut(s) 192, 1294, 1453, 1618
MaeI CTAG 2 cut(s) 176, 1209
MaeII ACGT 1 cut(s) 1306
MaeIII GTNAC 6 cut(s) 80, 479, 670, 727, 1078, 1581
MflI RGATCY 5 cut(s) 67, 469, 526, 1552, 1606
MhlI GDGCHC 3 cut(s) 537, 840, 1481
MluCI AATT 4 cut(s) 459, 587, 714, 785
MlyI GAGTC 4 cut(s) 872, 1163, 1478, 1589
MmeI TCCRAC 1 cut(s) 642
MroXI GAANNNNTTC 1 cut(s) 942
MseI TTAA 4 cut(s) 315, 1205, 1590, 1680
MslI CAYNNNNRTG 2 cut(s) 656, 953
MspI CCGG 3 cut(s) 455, 466, 1273
MspR9I CCNGG 3 cut(s) 207, 467, 707
Mva1269I GAATGC 2 cut(s) 439, 1142
MvaI CCWGG 2 cut(s) 207, 707
MwoI GCNNNNNNNGC 3 cut(s) 56, 890, 1451
NciI CCSGG 1 cut(s) 467
NcoI CCATGG 4 cut(s) 39, 948, 1001, 1446
NlaIV GGNNCC 4 cut(s) 173, 597, 849, 1007
NmeAIII GCCGAG 1 cut(s) 85
NmuCI GTSAC 4 cut(s) 479, 727, 1078, 1581
NspI RCATGY 1 cut(s) 655
PaeR7I CTCGAG 1 cut(s) 833
PagI TCATGA 1 cut(s) 1324
PceI AGGCCT 1 cut(s) 426
PcsI WCGNNNNNNNCGW 1 cut(s) 1478
PctI GAATGC 2 cut(s) 439, 1142
PdmI GAANNNNTTC 1 cut(s) 942
PfeI GAWTC 3 cut(s) 415, 1128, 1490
PflFI GACNNNGTC 1 cut(s) 1279
PkrI GCNGC 5 cut(s) 552, 555, 1333, 1372, 1444
PleI GAGTC 4 cut(s) 872, 1162, 1477, 1588
PpsI GAGTC 4 cut(s) 872, 1162, 1477, 1588
PpuMI RGGWCCY 1 cut(s) 847
PsiI TTATAA 1 cut(s) 720
Psp124BI GAGCTC 2 cut(s) 840, 1481
Psp5II RGGWCCY 1 cut(s) 847
Psp6I CCWGG 2 cut(s) 205, 705
PspEI GGTNACC 2 cut(s) 670, 727
PspGI CCWGG 2 cut(s) 205, 705
PspN4I GGNNCC 4 cut(s) 173, 597, 849, 1007
PspPI GGNCC 3 cut(s) 847, 1005, 1275
PspPPI RGGWCCY 1 cut(s) 847
PspXI VCTCGAGB 1 cut(s) 833
PstI CTGCAG 2 cut(s) 552, 1375
PsuI RGATCY 5 cut(s) 67, 469, 526, 1552, 1606
PsyI GACNNNGTC 1 cut(s) 1279
RsaI GTAC 3 cut(s) 546, 580, 1134
RsaNI GTAC 3 cut(s) 545, 579, 1133
RseI CAYNNNNRTG 2 cut(s) 656, 953
SacI GAGCTC 2 cut(s) 840, 1481
SaqAI TTAA 4 cut(s) 315, 1205, 1590, 1680
SatI GCNGC 5 cut(s) 551, 554, 1332, 1371, 1443
Sau96I GGNCC 3 cut(s) 847, 1005, 1275
SchI GAGTC 4 cut(s) 872, 1163, 1478, 1589
ScrFI CCNGG 3 cut(s) 207, 467, 707
SduI GDGCHC 3 cut(s) 537, 840, 1481
SfaNI GCATC 4 cut(s) 192, 1294, 1453, 1618
SfcI CTRYAG 2 cut(s) 548, 1371
Sfr274I CTCGAG 1 cut(s) 833
SinI GGWCC 3 cut(s) 847, 1005, 1275
SlaI CTCGAG 1 cut(s) 833
SmiMI CAYNNNNRTG 2 cut(s) 656, 953
SmlI CTYRAG 3 cut(s) 774, 833, 1556
SmoI CTYRAG 3 cut(s) 774, 833, 1556
Sse9I AATT 4 cut(s) 459, 587, 714, 785
SseBI AGGCCT 1 cut(s) 426
SspMI CTAG 2 cut(s) 176, 1209
SstI GAGCTC 2 cut(s) 840, 1481
StuI AGGCCT 1 cut(s) 426
StyD4I CCNGG 3 cut(s) 205, 465, 705
StyI CCWWGG 5 cut(s) 39, 387, 948, 1001, 1446
TaaI ACNGT 5 cut(s) 127, 544, 606, 1348, 1587
TaiI ACGT 1 cut(s) 1309
TaqI TCGA 9 cut(s) 565, 734, 834, 842, 1242, 1355, 1459, 1472, 1578
TasI AATT 4 cut(s) 459, 587, 714, 785
TatI WGTACW 1 cut(s) 544
TfiI GAWTC 3 cut(s) 415, 1128, 1490
Tru1I TTAA 4 cut(s) 315, 1205, 1590, 1680
Tru9I TTAA 4 cut(s) 315, 1205, 1590, 1680
TscAI CASTG 2 cut(s) 331, 565
TseFI GTSAC 4 cut(s) 479, 727, 1078, 1581
TseI GCWGC 5 cut(s) 550, 553, 1331, 1370, 1442
Tsp45I GTSAC 4 cut(s) 479, 727, 1078, 1581
TspDTI ATGAA 9 cut(s) 227, 276, 580, 624, 885, 1240, 1341, 1377, 1400
TspGWI ACGGA 2 cut(s) 1088, 1449
TspRI CASTG 2 cut(s) 331, 565
Tth111I GACNNNGTC 1 cut(s) 1279
VpaK11BI GGWCC 3 cut(s) 847, 1005, 1275
XapI RAATTY 2 cut(s) 587, 714
XceI RCATGY 1 cut(s) 655
XhoI CTCGAG 1 cut(s) 833
XmiI GTMKAC 1 cut(s) 150
XmnI GAANNNNTTC 1 cut(s) 942
XspI CTAG 2 cut(s) 176, 1209
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.