Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8298477.1

Orthogroup ID

OG0002495

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 860

Gene Structure 859 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8298477.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 859 bp

atgataacggagctgttcacttccgggagcttgaagcagtatcgaaagaagcacacccatgttgagatcaaggccatcaagaaatgggcgcggcagattctcaaggggctgagctatctgcactgtcatgaccctccgattgttcatagggatttgaagtgtgacaatgtgttcattaatgggtttaatggggaagtgaagattggagatctggggtttgcgttggtgatgcagcagcctactactgagtttagagtgattggcacgcccgagtttatagcgccggagatgtatgacgaggagtataatgagttggtggatatctattcttttgggttgtgcttgctagaaatggtgacttgtgagtacccttacaaggagtgtcgaaattcggctcatatttacaagaaggttatcaatggtgtaatgccggcttctctgaataaagtgaaggatcctcaagtgaagcagttcattgagaagtgtctagttcctgcatcgatgagattgtctgcaatggagctcctgaaagatccattccttgcagctgatgattcaagggtgcctaaatcttttcccatggaaatagatagcagaagtgtcaaagagagttccacatcatctagctcttcgattctggagtgtcagaggtccacaaagagtaatgaattgactttaagagcaaagaggaattctgatagtagcaatactattgctttgaccttgagtgttgctgatccacggggtcgtcgtgggaagaagactattgagtttgatttctatcttgattccgatactgctatttcgattgctggggagatggttgatcaggagcttggtctttcaactgaagatgtgt

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0008152 GO:0009314 GO:0009416 GO:0009628 GO:0009648 GO:0009791 GO:0009909 GO:0009911 GO:0009987 GO:0010228 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0022414 GO:0023052 GO:0032501 GO:0032502 GO:0035556 GO:0036211 GO:0042802 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0046777 GO:0048518 GO:0048573 GO:0048580 GO:0048582 GO:0048608 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051094 GO:0051239 GO:0051240 GO:0051716 GO:0061458 GO:0065007 GO:0071704 GO:0140096 GO:1901564 GO:2000026 GO:2000241 GO:2000243

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

OSR1_C Pkinase

Protein Analysis

286

Amino Acids

32.28

Weight (kDa)

6.12

Isoelectric Point (pI)

47.71

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002495)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G64630 AT5G41990
fragaria_vesca	FvH4_5g11251 FvH4_5g11251 FvH4_6g41800 FvH4_6g41920 FvH4_6g42720
malus_domestica	MD06G1114800.v1.1 MD06G1115000.v1.1 MD13G1200200.v1.1 MD14G1136200.v1.1
prunus_persica	Prupe.5G127500_v2.0.a1 Prupe.5G127500_v2.0.a1
pyrus_communis	pycom06g10760 pycom13g17380 pycom13g17390 pycom14g10980
rosa_chinensis	RchiOBHm_Chr2g0157811 RchiOBHm_Chr7g0186611
rosa_laevigata	RLG00000004829 RLG00000021022
rosa_multiflora	Rmu_co8298477.1_g000001 Rmu_sc0000645.1_g000017 Rmu_sc0007722.1_g000019
rosa_roxburghii	Rroxscaffold_2G00091930 Rroxscaffold_3G00268010
rosa_rugosa	Rorug02G0463900 Rorug06G0475200 Rorug06G0475300 Rorug06G0475400
rosa_samantha	Rh2AG529200 Rh2BG543300 Rh2CG513500 Rh2DG552100 Rh7AG065500 Rh7BG081400 Rh7CG082300 Rh7DG083300
rosa_wichuraiana	Rw2G043750 Rw7G006920 Rw7G007140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	562
AccII	CGCG	1 cut(s)	91
AciI	CCGC	1 cut(s)	91
AclWI	GGATC	4 cut(s)	449, 462, 527, 731
AcsI	RAATTY	2 cut(s)	388, 691
AfaI	GTAC	1 cut(s)	368
AfiI	CCNNNNNNNGG	1 cut(s)	376
AgsI	TTSAA	4 cut(s)	34, 157, 558, 846
AjuI	GAANNNNNNNTTGG	2 cut(s)	186, 218
AluBI	AGCT	7 cut(s)	13, 30, 114, 523, 548, 627, 835
AluI	AGCT	7 cut(s)	13, 30, 114, 523, 548, 627, 835
Alw21I	GWGCWC	1 cut(s)	525
AlwI	GGATC	4 cut(s)	449, 462, 527, 731
Ama87I	CYCGRG	1 cut(s)	269
AoxI	GGCC	1 cut(s)	72
ApeKI	GCWGC	3 cut(s)	232, 235, 545
ApoI	RAATTY	2 cut(s)	388, 691
AseI	ATTAAT	1 cut(s)	177
Asp700I	GAANNNNTTC	1 cut(s)	470
AspLEI	GCGC	2 cut(s)	91, 283
AspS9I	GGNCC	1 cut(s)	651
AsuC2I	CCSGG	1 cut(s)	25
AsuHPI	GGTGA	2 cut(s)	238, 367
AvaI	CYCGRG	1 cut(s)	269
AvaII	GGWCC	1 cut(s)	651
BamHI	GGATCC	1 cut(s)	454
BanI	GGYRCC	1 cut(s)	562
BanII	GRGCYC	1 cut(s)	525
BbsI	GAAGAC	1 cut(s)	767
Bbv12I	GWGCWC	1 cut(s)	525
BbvI	GCAGC	3 cut(s)	244, 247, 557
BccI	CCATC	2 cut(s)	83, 814
BclI	TGATCA	1 cut(s)	826
BcnI	CCSGG	1 cut(s)	25
BfaI	CTAG	3 cut(s)	347, 488, 624
BfoI	RGCGCY	1 cut(s)	284
BglII	AGATCT	1 cut(s)	208
BisI	GCNGC	4 cut(s)	92, 233, 236, 546
BlpI	GCTNAGC	1 cut(s)	110
BlsI	GCNGC	4 cut(s)	93, 234, 237, 547
Bme1390I	CCNGG	1 cut(s)	25
Bme18I	GGWCC	1 cut(s)	651
BmeT110I	CYCGRG	1 cut(s)	269
BmgT120I	GGNCC	1 cut(s)	651
BmiI	GGNNCC	2 cut(s)	456, 564
BmrFI	CCNGG	1 cut(s)	25
BmsI	GCATC	2 cut(s)	219, 506
BpiI	GAAGAC	1 cut(s)	767
BpmI	CTGGAG	1 cut(s)	659
Bpu1102I	GCTNAGC	1 cut(s)	110
BpuEI	CTTGAG	3 cut(s)	86, 444, 745
BpuMI	CCSGG	1 cut(s)	25
Bsa29I	ATCGAT	1 cut(s)	500
BsaBI	GATNNNNATC	1 cut(s)	780
BsaJI	CCNNGG	2 cut(s)	579, 740
Bsc4I	CCNNNNNNNGG	1 cut(s)	376
Bse118I	RCCGGY	1 cut(s)	430
Bse3DI	GCAATG	1 cut(s)	522
Bse8I	GATNNNNATC	1 cut(s)	780
BseCI	ATCGAT	1 cut(s)	500
BseDI	CCNNGG	2 cut(s)	579, 740
BseJI	GATNNNNATC	1 cut(s)	780
BseLI	CCNNNNNNNGG	1 cut(s)	376
BseMI	GCAATG	1 cut(s)	522
BseMII	CTCAG	2 cut(s)	101, 237
BseRI	GAGGAG	1 cut(s)	314
BseXI	GCAGC	3 cut(s)	244, 247, 557
BseYI	CCCAGC	1 cut(s)	812
BsgI	GTGCAG	1 cut(s)	104
Bsh1236I	CGCG	1 cut(s)	91
BshFI	GGCC	1 cut(s)	74
BshNI	GGYRCC	1 cut(s)	562
BshVI	ATCGAT	1 cut(s)	500
BsiHKAI	GWGCWC	1 cut(s)	525
BsiHKCI	CYCGRG	1 cut(s)	269
BsiSI	CCGG	3 cut(s)	24, 284, 431
BslI	CCNNNNNNNGG	1 cut(s)	376
BsnI	GGCC	1 cut(s)	74
BsoBI	CYCGRG	1 cut(s)	269
Bsp1286I	GDGCHC	1 cut(s)	525
Bsp143I	GATC	6 cut(s)	66, 208, 454, 532, 736, 826
Bsp1720I	GCTNAGC	1 cut(s)	110
Bsp19I	CCATGG	1 cut(s)	579
BspACI	CCGC	1 cut(s)	91
BspANI	GGCC	1 cut(s)	74
BspCNI	CTCAG	2 cut(s)	102, 238
BspDI	ATCGAT	1 cut(s)	500
BspFNI	CGCG	1 cut(s)	91
BspHI	TCATGA	1 cut(s)	127
BspLI	GGNNCC	2 cut(s)	456, 564
BspPI	GGATC	4 cut(s)	449, 462, 527, 731
BspQI	GCTCTTC	1 cut(s)	634
BspT107I	GGYRCC	1 cut(s)	562
BsrDI	GCAATG	1 cut(s)	522
BsrFI	RCCGGY	1 cut(s)	430
BssAI	RCCGGY	1 cut(s)	430
BssECI	CCNNGG	2 cut(s)	579, 740
BssMI	GATC	6 cut(s)	66, 208, 454, 532, 736, 826
BssT1I	CCWWGG	1 cut(s)	579
Bst4CI	ACNGT	1 cut(s)	125
Bst6I	CTCTTC	1 cut(s)	634
BstC8I	GCNNGC	3 cut(s)	266, 344, 432
BstDEI	CTNAG	2 cut(s)	110, 246
BstDSI	CCRYGG	2 cut(s)	579, 740
BstFNI	CGCG	1 cut(s)	91
BstH2I	RGCGCY	1 cut(s)	284
BstHHI	GCGC	2 cut(s)	91, 283
BstKTI	GATC	6 cut(s)	69, 211, 457, 535, 739, 829
BstMBI	GATC	6 cut(s)	66, 208, 454, 532, 736, 826
BstSCI	CCNGG	1 cut(s)	23
BstUI	CGCG	1 cut(s)	91
BstV1I	GCAGC	3 cut(s)	244, 247, 557
BstV2I	GAAGAC	1 cut(s)	767
BstX2I	RGATCY	3 cut(s)	208, 454, 532
BstYI	RGATCY	3 cut(s)	208, 454, 532
Bsu15I	ATCGAT	1 cut(s)	500
BsuRI	GGCC	1 cut(s)	74
BsuTUI	ATCGAT	1 cut(s)	500
BtgI	CCRYGG	2 cut(s)	579, 740
BtsIMutI	CAGTG	1 cut(s)	121
Cac8I	GCNNGC	3 cut(s)	266, 344, 432
CciI	TCATGA	1 cut(s)	127
CfoI	GCGC	2 cut(s)	91, 283
Cfr10I	RCCGGY	1 cut(s)	430
Cfr13I	GGNCC	1 cut(s)	651
ClaI	ATCGAT	1 cut(s)	500
Csp6I	GTAC	1 cut(s)	367
CviAII	CATG	3 cut(s)	59, 128, 580
CviQI	GTAC	1 cut(s)	367
DdeI	CTNAG	2 cut(s)	110, 246
DpnI	GATC	6 cut(s)	68, 210, 456, 534, 738, 828
DpnII	GATC	6 cut(s)	66, 208, 454, 532, 736, 826
Eam1104I	CTCTTC	1 cut(s)	634
EarI	CTCTTC	1 cut(s)	634
Ecl136II	GAGCTC	1 cut(s)	523
Eco130I	CCWWGG	1 cut(s)	579
Eco24I	GRGCYC	1 cut(s)	525
Eco32I	GATATC	1 cut(s)	322
Eco47I	GGWCC	1 cut(s)	651
Eco53kI	GAGCTC	1 cut(s)	523
Eco88I	CYCGRG	1 cut(s)	269
EcoICRI	GAGCTC	1 cut(s)	523
EcoRI	GAATTC	1 cut(s)	691
EcoRV	GATATC	1 cut(s)	322
EcoT14I	CCWWGG	1 cut(s)	579
EcoT38I	GRGCYC	1 cut(s)	525
ErhI	CCWWGG	1 cut(s)	579
FaeI	CATG	3 cut(s)	62, 131, 583
FaiI	YATR	8 cut(s)	60, 129, 147, 278, 294, 306, 399, 581
FatI	CATG	3 cut(s)	58, 127, 579
FbaI	TGATCA	1 cut(s)	826
Fnu4HI	GCNGC	4 cut(s)	92, 233, 236, 546
FriOI	GRGCYC	1 cut(s)	525
Fsp4HI	GCNGC	4 cut(s)	92, 233, 236, 546
FspBI	CTAG	3 cut(s)	347, 488, 624
GlaI	GCGC	2 cut(s)	90, 282
GluI	GCNGC	4 cut(s)	92, 233, 236, 546
GsaI	CCCAGC	1 cut(s)	816
GsuI	CTGGAG	1 cut(s)	659
HaeII	RGCGCY	1 cut(s)	284
HaeIII	GGCC	1 cut(s)	74
HapII	CCGG	3 cut(s)	24, 284, 431
HhaI	GCGC	2 cut(s)	91, 283
Hin1II	CATG	3 cut(s)	62, 131, 583
Hin6I	GCGC	2 cut(s)	89, 281
HinP1I	GCGC	2 cut(s)	89, 281
HinfI	GANTC	4 cut(s)	97, 554, 634, 788
HpaII	CCGG	3 cut(s)	24, 284, 431
HphI	GGTGA	2 cut(s)	238, 367
Hpy166II	GTNNAC	2 cut(s)	18, 654
Hpy188I	TCNGA	5 cut(s)	138, 441, 648, 697, 793
Hpy188III	TCNNGA	6 cut(s)	79, 128, 526, 638, 785, 830
Hpy8I	GTNNAC	2 cut(s)	18, 654
Hpy99I	CGWCG	1 cut(s)	753
HpyAV	CCTTC	2 cut(s)	403, 445
HpyCH4III	ACNGT	1 cut(s)	125
HpyCH4V	TGCA	5 cut(s)	121, 232, 497, 515, 545
HpyF3I	CTNAG	2 cut(s)	110, 246
Hsp92II	CATG	3 cut(s)	62, 131, 583
HspAI	GCGC	2 cut(s)	89, 281
KroI	GCCGGC	1 cut(s)	430
KroNI	GCCGGC	1 cut(s)	432
Ksp22I	TGATCA	1 cut(s)	826
Kzo9I	GATC	6 cut(s)	66, 208, 454, 532, 736, 826
LguI	GCTCTTC	1 cut(s)	634
LmnI	GCTCC	5 cut(s)	10, 27, 520, 528, 832
LpnPI	CCDG	9 cut(s)	37, 197, 297, 444, 507, 539, 623, 798, 815
Lsp1109I	GCAGC	3 cut(s)	244, 247, 557
LweI	GCATC	2 cut(s)	219, 506
MaeI	CTAG	3 cut(s)	347, 488, 624
MaeIII	GTNAC	2 cut(s)	161, 355
MalI	GATC	6 cut(s)	68, 210, 456, 534, 738, 828
MboI	GATC	6 cut(s)	66, 208, 454, 532, 736, 826
MboII	GAAGA	4 cut(s)	211, 621, 769, 772
MflI	RGATCY	3 cut(s)	208, 454, 532
MhlI	GDGCHC	1 cut(s)	525
MluCI	AATT	3 cut(s)	388, 668, 691
MnlI	CCTC	5 cut(s)	144, 292, 468, 642, 681
MroNI	GCCGGC	1 cut(s)	430
MroXI	GAANNNNTTC	1 cut(s)	470
MseI	TTAA	3 cut(s)	177, 186, 677
MslI	CAYNNNNRTG	2 cut(s)	57, 126
MspA1I	CMGCKG	1 cut(s)	548
MspI	CCGG	3 cut(s)	24, 284, 431
MspR9I	CCNGG	1 cut(s)	25
MvnI	CGCG	1 cut(s)	91
NaeI	GCCGGC	1 cut(s)	432
NciI	CCSGG	1 cut(s)	25
NcoI	CCATGG	1 cut(s)	579
NdeII	GATC	6 cut(s)	66, 208, 454, 532, 736, 826
NgoMIV	GCCGGC	1 cut(s)	430
NlaIII	CATG	3 cut(s)	62, 131, 583
NlaIV	GGNNCC	2 cut(s)	456, 564
NmuCI	GTSAC	2 cut(s)	161, 355
PagI	TCATGA	1 cut(s)	127
PciSI	GCTCTTC	1 cut(s)	634
PcsI	WCGNNNNNNNCGW	1 cut(s)	748
PdiI	GCCGGC	1 cut(s)	432
PdmI	GAANNNNTTC	1 cut(s)	470
PfeI	GAWTC	4 cut(s)	97, 554, 634, 788
PfoI	TCCNGGA	1 cut(s)	23
PkrI	GCNGC	4 cut(s)	93, 234, 237, 547
PshBI	ATTAAT	1 cut(s)	177
Psp124BI	GAGCTC	1 cut(s)	525
PspFI	CCCAGC	1 cut(s)	812
PspN4I	GGNNCC	2 cut(s)	456, 564
PspPI	GGNCC	1 cut(s)	651
PsuI	RGATCY	3 cut(s)	208, 454, 532
PvuII	CAGCTG	1 cut(s)	548
RsaI	GTAC	1 cut(s)	368
RsaNI	GTAC	1 cut(s)	367
RseI	CAYNNNNRTG	2 cut(s)	57, 126
SacI	GAGCTC	1 cut(s)	525
SapI	GCTCTTC	1 cut(s)	634
SaqAI	TTAA	3 cut(s)	177, 186, 677
SatI	GCNGC	4 cut(s)	92, 233, 236, 546
Sau3AI	GATC	6 cut(s)	66, 208, 454, 532, 736, 826
Sau96I	GGNCC	1 cut(s)	651
ScrFI	CCNGG	1 cut(s)	25
SduI	GDGCHC	1 cut(s)	525
SfaNI	GCATC	2 cut(s)	219, 506
SinI	GGWCC	1 cut(s)	651
SmiMI	CAYNNNNRTG	2 cut(s)	57, 126
SmlI	CTYRAG	3 cut(s)	101, 459, 724
SmoI	CTYRAG	3 cut(s)	101, 459, 724
Sse9I	AATT	3 cut(s)	388, 668, 691
SsiI	CCGC	1 cut(s)	91
SspMI	CTAG	3 cut(s)	347, 488, 624
SstI	GAGCTC	1 cut(s)	525
StyD4I	CCNGG	1 cut(s)	23
StyI	CCWWGG	1 cut(s)	579
TaaI	ACNGT	1 cut(s)	125
TaqI	TCGA	5 cut(s)	43, 385, 500, 632, 806
TasI	AATT	3 cut(s)	388, 668, 691
TauI	GCSGC	1 cut(s)	94
TfiI	GAWTC	4 cut(s)	97, 554, 634, 788
Tru1I	TTAA	3 cut(s)	177, 186, 677
Tru9I	TTAA	3 cut(s)	177, 186, 677
TscAI	CASTG	1 cut(s)	128
TseFI	GTSAC	2 cut(s)	161, 355
TseI	GCWGC	3 cut(s)	232, 235, 545
Tsp45I	GTSAC	2 cut(s)	161, 355
TspDTI	ATGAA	4 cut(s)	134, 163, 463, 681
TspGWI	ACGGA	1 cut(s)	23
TspRI	CASTG	1 cut(s)	128
VpaK11BI	GGWCC	1 cut(s)	651
VspI	ATTAAT	1 cut(s)	177
XapI	RAATTY	2 cut(s)	388, 691
XmnI	GAANNNNTTC	1 cut(s)	470
XspI	CTAG	3 cut(s)	347, 488, 624

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.