Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr06

Orthogroup ID

OG0002495

Physical Location & Seq

Genomic Coordinates Forward (+)

25418560 .. 25419289

Gene Structure 730 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD06G1115000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 624 bp

ATGATCTATTACACCAATGAAAATTCTAACCCTTCGGTTCTGGAGTTACAGAGTTTAACTGAGAATAATGAGTTCAGGTTAAGAGCGACCAAAATTGCTGATAACACCGTCTCATTAACTTTGCGCATTGCTGATACATGTGGTCGTGTGAGGAATATCCATTTTGAGTTCTATCTGGATTCTGATACCGCAATTTCAATTGCTGGGGAGATGGTTGAGCAACTTGATCTTTCGCATGAAGATGTGTCTGTCATAGCTGAGTTAATTGATAACTTGATCATGAAGCTAGTACCTGGCTGGAAACCTTCATCAGAAGGTTCATCATGTGGAACAAATAGTTCATATGGGGATCATCCTGCACCGCAAAATGTTGTCTCACATTTTGCAAATGCGGAGGACCGAGATGACCAAGCATCAATGATTTTAGATACTTCGGCTACCTCGGCTGAGTATGGTGTCCCTACTGCCTCAGGTGCCAGTAATGTCAAAGTATGGAGTCGGCTAAATACAGTTCTGATGAATGCTGTAAAGCTTCAGATGGTTACGGTACCAGTCCAGATTGTATGGTTCAGGGTGCGGTCAGGGAGAAGAGTTACGAAGCTGATTCTGGTGATTCAGTTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0008152 GO:0009314 GO:0009416 GO:0009628 GO:0009648 GO:0009791 GO:0009909 GO:0009911 GO:0009987 GO:0010228 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0022414 GO:0023052 GO:0032501 GO:0032502 GO:0035556 GO:0036211 GO:0042802 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0046777 GO:0048518 GO:0048573 GO:0048580 GO:0048582 GO:0048608 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051094 GO:0051239 GO:0051240 GO:0051716 GO:0061458 GO:0065007 GO:0071704 GO:0140096 GO:1901564 GO:2000026 GO:2000241 GO:2000243

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

OSR1_C Pkinase

Protein Analysis

208

Amino Acids

22.88

Weight (kDa)

5.06

Isoelectric Point (pI)

35.92

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
OSR1_C	PF12202	38 - 93	7.1e-07	Oxidative-stress-responsive kinase 1 C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0002495)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G64630 AT5G41990
fragaria_vesca	FvH4_5g11251 FvH4_5g11251 FvH4_6g41800 FvH4_6g41920 FvH4_6g42720
malus_domestica	MD06G1114800.v1.1 MD06G1115000.v1.1 MD13G1200200.v1.1 MD14G1136200.v1.1
prunus_persica	Prupe.5G127500_v2.0.a1 Prupe.5G127500_v2.0.a1
pyrus_communis	pycom06g10760 pycom13g17380 pycom13g17390 pycom14g10980
rosa_chinensis	RchiOBHm_Chr2g0157811 RchiOBHm_Chr7g0186611
rosa_laevigata	RLG00000004829 RLG00000021022
rosa_multiflora	Rmu_co8298477.1_g000001 Rmu_sc0000645.1_g000017 Rmu_sc0007722.1_g000019
rosa_roxburghii	Rroxscaffold_2G00091930 Rroxscaffold_3G00268010
rosa_rugosa	Rorug02G0463900 Rorug06G0475200 Rorug06G0475300 Rorug06G0475400
rosa_samantha	Rh2AG529200 Rh2BG543300 Rh2CG513500 Rh2DG552100 Rh7AG065500 Rh7BG081400 Rh7CG082300 Rh7DG083300
rosa_wichuraiana	Rw2G043750 Rw7G006920 Rw7G007140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	125
Acc65I	GGTACC	1 cut(s)	547
AccB1I	GGYRCC	2 cut(s)	473, 547
AciI	CCGC	4 cut(s)	189, 362, 392, 577
AclWI	GGATC	1 cut(s)	357
AcsI	RAATTY	1 cut(s)	22
AcuI	CTGAAG	1 cut(s)	518
AfaI	GTAC	2 cut(s)	291, 549
AflIII	ACRYGT	1 cut(s)	137
AgsI	TTSAA	1 cut(s)	198
AjnI	CCWGG	1 cut(s)	292
AluBI	AGCT	4 cut(s)	257, 286, 532, 601
AluI	AGCT	4 cut(s)	257, 286, 532, 601
Alw26I	GTCTC	2 cut(s)	115, 379
AlwI	GGATC	1 cut(s)	357
ApoI	RAATTY	1 cut(s)	22
Asp718I	GGTACC	1 cut(s)	547
AspLEI	GCGC	1 cut(s)	126
AspS9I	GGNCC	1 cut(s)	397
AsuHPI	GGTGA	1 cut(s)	622
AvaII	GGWCC	1 cut(s)	397
AxyI	CCTNAGG	1 cut(s)	469
BanI	GGYRCC	2 cut(s)	473, 547
BccI	CCATC	2 cut(s)	205, 532
BciT130I	CCWGG	1 cut(s)	294
BclI	TGATCA	1 cut(s)	276
BcoDI	GTCTC	2 cut(s)	115, 379
BfaI	CTAG	1 cut(s)	287
Bme1390I	CCNGG	1 cut(s)	294
Bme18I	GGWCC	1 cut(s)	397
BmgT120I	GGNCC	1 cut(s)	397
BmiI	GGNNCC	2 cut(s)	475, 549
BmrFI	CCNGG	1 cut(s)	294
BmsI	GCATC	1 cut(s)	422
BpmI	CTGGAG	1 cut(s)	62
BsaJI	CCNNGG	1 cut(s)	441
Bse1I	ACTGG	2 cut(s)	477, 551
Bse21I	CCTNAGG	1 cut(s)	469
Bse3DI	GCAATG	1 cut(s)	126
BseBI	CCWGG	1 cut(s)	294
BseDI	CCNNGG	1 cut(s)	441
BseGI	GGATG	1 cut(s)	352
BseMI	GCAATG	1 cut(s)	126
BseMII	CTCAG	4 cut(s)	51, 249, 438, 483
BseNI	ACTGG	2 cut(s)	477, 551
BseYI	CCCAGC	1 cut(s)	203
BsgI	GTGCAG	1 cut(s)	342
BshNI	GGYRCC	2 cut(s)	473, 547
BslFI	GGGAC	1 cut(s)	443
BsmAI	GTCTC	2 cut(s)	115, 379
BsmBI	CGTCTC	1 cut(s)	115
BsmFI	GGGAC	1 cut(s)	443
BsmI	GAATGC	1 cut(s)	526
Bsp143I	GATC	4 cut(s)	3, 226, 276, 349
BspACI	CCGC	4 cut(s)	189, 362, 392, 577
BspCNI	CTCAG	4 cut(s)	52, 250, 439, 482
BspHI	TCATGA	1 cut(s)	279
BspLI	GGNNCC	2 cut(s)	475, 549
BspPI	GGATC	1 cut(s)	357
BspT107I	GGYRCC	2 cut(s)	473, 547
BsrDI	GCAATG	1 cut(s)	126
BsrI	ACTGG	2 cut(s)	477, 551
BssECI	CCNNGG	1 cut(s)	441
BssMI	GATC	4 cut(s)	3, 226, 276, 349
Bst2UI	CCWGG	1 cut(s)	294
Bst4CI	ACNGT	3 cut(s)	109, 511, 547
Bst6I	CTCTTC	1 cut(s)	583
BstDEI	CTNAG	4 cut(s)	60, 258, 447, 469
BstF5I	GGATG	1 cut(s)	352
BstHHI	GCGC	1 cut(s)	126
BstKTI	GATC	4 cut(s)	6, 229, 279, 352
BstMAI	GTCTC	2 cut(s)	115, 379
BstMBI	GATC	4 cut(s)	3, 226, 276, 349
BstMWI	GCNNNNNNNGC	2 cut(s)	443, 473
BstNI	CCWGG	1 cut(s)	294
BstNSI	RCATGY	1 cut(s)	141
BstSCI	CCNGG	1 cut(s)	292
Bsu36I	CCTNAGG	1 cut(s)	469
BtsCI	GGATG	1 cut(s)	352
CciI	TCATGA	1 cut(s)	279
CfoI	GCGC	1 cut(s)	126
Cfr13I	GGNCC	1 cut(s)	397
Csp6I	GTAC	2 cut(s)	290, 548
CviAII	CATG	4 cut(s)	138, 236, 280, 324
CviJI	RGCY	8 cut(s)	257, 286, 297, 437, 446, 502, 532, 601
CviKI_1	RGCY	8 cut(s)	257, 286, 297, 437, 446, 502, 532, 601
CviQI	GTAC	2 cut(s)	290, 548
DdeI	CTNAG	4 cut(s)	60, 258, 447, 469
DpnI	GATC	4 cut(s)	5, 228, 278, 351
DpnII	GATC	4 cut(s)	3, 226, 276, 349
Eam1104I	CTCTTC	1 cut(s)	583
EarI	CTCTTC	1 cut(s)	583
Eco47I	GGWCC	1 cut(s)	397
Eco57I	CTGAAG	1 cut(s)	518
Eco81I	CCTNAGG	1 cut(s)	469
EcoRII	CCWGG	1 cut(s)	292
Esp3I	CGTCTC	1 cut(s)	115
FaeI	CATG	4 cut(s)	141, 239, 283, 327
FaqI	GGGAC	1 cut(s)	443
FatI	CATG	4 cut(s)	137, 235, 279, 323
FauNDI	CATATG	1 cut(s)	343
FbaI	TGATCA	1 cut(s)	276
FokI	GGATG	1 cut(s)	339
FspBI	CTAG	1 cut(s)	287
FspI	TGCGCA	1 cut(s)	125
GlaI	GCGC	1 cut(s)	125
GsaI	CCCAGC	1 cut(s)	207
GsuI	CTGGAG	1 cut(s)	62
HhaI	GCGC	1 cut(s)	126
Hin1II	CATG	4 cut(s)	141, 239, 283, 327
Hin6I	GCGC	1 cut(s)	124
HinP1I	GCGC	1 cut(s)	124
HindIII	AAGCTT	1 cut(s)	530
HinfI	GANTC	4 cut(s)	179, 496, 604, 613
HphI	GGTGA	1 cut(s)	622
Hpy188I	TCNGA	4 cut(s)	184, 313, 516, 537
Hpy188III	TCNNGA	4 cut(s)	41, 176, 280, 556
HpyAV	CCTTC	3 cut(s)	42, 308, 315
HpyCH4III	ACNGT	3 cut(s)	109, 511, 547
HpyCH4V	TGCA	2 cut(s)	359, 386
HpyF10VI	GCNNNNNNNGC	2 cut(s)	443, 473
HpyF3I	CTNAG	4 cut(s)	60, 258, 447, 469
Hsp92II	CATG	4 cut(s)	141, 239, 283, 327
HspAI	GCGC	1 cut(s)	124
KpnI	GGTACC	1 cut(s)	551
Ksp22I	TGATCA	1 cut(s)	276
Kzo9I	GATC	4 cut(s)	3, 226, 276, 349
LweI	GCATC	1 cut(s)	422
MaeI	CTAG	1 cut(s)	287
MaeIII	GTNAC	3 cut(s)	45, 541, 592
MalI	GATC	4 cut(s)	5, 228, 278, 351
MboI	GATC	4 cut(s)	3, 226, 276, 349
MboII	GAAGA	2 cut(s)	251, 600
MfeI	CAATTG	1 cut(s)	198
MluCI	AATT	5 cut(s)	22, 93, 192, 198, 264
MlyI	GAGTC	1 cut(s)	505
MnlI	CCTC	4 cut(s)	144, 388, 451, 478
MseI	TTAA	4 cut(s)	56, 80, 116, 263
MslI	CAYNNNNRTG	1 cut(s)	240
MspR9I	CCNGG	1 cut(s)	294
MunI	CAATTG	1 cut(s)	198
Mva1269I	GAATGC	1 cut(s)	526
MvaI	CCWGG	1 cut(s)	294
MwoI	GCNNNNNNNGC	2 cut(s)	443, 473
NdeI	CATATG	1 cut(s)	343
NdeII	GATC	4 cut(s)	3, 226, 276, 349
NlaIII	CATG	4 cut(s)	141, 239, 283, 327
NlaIV	GGNNCC	2 cut(s)	475, 549
NmeAIII	GCCGAG	1 cut(s)	422
NsbI	TGCGCA	1 cut(s)	125
NspI	RCATGY	1 cut(s)	141
PagI	TCATGA	1 cut(s)	279
PciI	ACATGT	1 cut(s)	137
PctI	GAATGC	1 cut(s)	526
PfeI	GAWTC	3 cut(s)	179, 604, 613
PleI	GAGTC	1 cut(s)	504
PpsI	GAGTC	1 cut(s)	504
PscI	ACATGT	1 cut(s)	137
Psp6I	CCWGG	1 cut(s)	292
PspFI	CCCAGC	1 cut(s)	203
PspGI	CCWGG	1 cut(s)	292
PspN4I	GGNNCC	2 cut(s)	475, 549
PspPI	GGNCC	1 cut(s)	397
RsaI	GTAC	2 cut(s)	291, 549
RsaNI	GTAC	2 cut(s)	290, 548
RseI	CAYNNNNRTG	1 cut(s)	240
SaqAI	TTAA	4 cut(s)	56, 80, 116, 263
Sau3AI	GATC	4 cut(s)	3, 226, 276, 349
Sau96I	GGNCC	1 cut(s)	397
SchI	GAGTC	1 cut(s)	505
ScrFI	CCNGG	1 cut(s)	294
SfaNI	GCATC	1 cut(s)	422
SinI	GGWCC	1 cut(s)	397
SmiMI	CAYNNNNRTG	1 cut(s)	240
Sse9I	AATT	5 cut(s)	22, 93, 192, 198, 264
SsiI	CCGC	4 cut(s)	189, 362, 392, 577
SspMI	CTAG	1 cut(s)	287
StyD4I	CCNGG	1 cut(s)	292
TaaI	ACNGT	3 cut(s)	109, 511, 547
TaqII	GACCGA	1 cut(s)	414
TasI	AATT	5 cut(s)	22, 93, 192, 198, 264
TfiI	GAWTC	3 cut(s)	179, 604, 613
Tru1I	TTAA	4 cut(s)	56, 80, 116, 263
Tru9I	TTAA	4 cut(s)	56, 80, 116, 263
TspDTI	ATGAA	7 cut(s)	33, 252, 296, 297, 309, 330, 533
VpaK11BI	GGWCC	1 cut(s)	397
XapI	RAATTY	1 cut(s)	22
XceI	RCATGY	1 cut(s)	141
XspI	CTAG	1 cut(s)	287

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.