FvH4_5g11251

Serine threonine-protein kinase WNK8-like

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
Physical Location & Seq
Reverse (-)
6381268 .. 6384515
3248 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g11251.t2

Sequence Viewer

Length: 1863 bp
ATGGATTTCTGTGCTGGTTTGATTGGTGTGAAGTCTGACTGTGAATGTGAATTTGTGGAGGAAGATCCGACTGGGAGATTCTTAAGGTCTGATGAAATCTTGGGGAGGGGAGCATTCAAGACTGTATATAAGGCGTTTGATGAGGTTGAAGGTTTAGAGGTGGCATGGAGCCAGGTGCATGTTGAGGATGTGTTGCAGACGCCGGAGCAACTTCAGAGGTTGTATTCTGAGGTTCATTTGCTGAAGTTGTTGAAGCATGAAAATATCATCAAGTTCTGTAACTGGTGGGTTGATGATAAGAACAAGACTATCAACATTATCACGGAGTTGTTCACTTCTGGGAGCTTGAGGCAGTACCGAAGGAAGCATAAGAGTGTTGAATTGAAGGCCATCAAGAAGTGGGCAAGGCAGATTCTTCGAGGCTTGCACTATCTGCATTCTCATGATCCTCCAATTATTCATAGAGATTTGAAATGCGACAATATATTTGTCAATGGAAATCAAGGGGAAATAAAAATTGGAGATCTTGGATTGGCAATAGTCATGCAGCAACCTACTGCCCATAGTGTGATCGGGACTCCAGAATTCATGGCTCCCGAGCTTTACGACGAGGAATATAATGAATTAGTCGACATCTATTCTTTTGGCATGTGCATGCTAGAAATGGTGACTTGTGAATACCCTTACAATGAATGTAAAAATCCTGCACAGATTTATAAGAAGGTTACCAATGGTATAAAGCCTGCTTCACTCAGTAAAGTGAGTGATCCTCAAGTCAAGCAGTTCATAGAGAAGTGTCTGGTTCCAGCTTCAATGAGACTGCCTGCGGTGGAGCTCTTGAAAGATCCATTCCTTGCAATTGACAATATGAAGGAGCGTACCTGTTATCCATTGGGATCACACAATTTCATTCCCAAATTAGAGAACATGACACAGCCTGAAGCTCGTCCAATGGATGTAGATGCTAACTGCCAGAAGATTTCTGCTGGCTCTTGCAGGAAAAGCGTCGATGTAACTTCCATCTCATCCGACCCCTCAGTTCTTGAATTACAAAGATTCACAGAGAGTAATGAATTCACTTTAAGAGCAGAGAAAAGTGCTGATAATACCATCGCATTGACTTTGCGTATTGTTGATCCATGTGGTCATGGTAAGACTATCCATTTTGAGTTCTACCTTCATACAGATACTGCAATTTCAATTGCTGGGGAGATGGCTGAGCAACTTGATCTCTCAACTGAAGATGTATCCGTCACAGCTGAGTTAATTGATAGCTTGATTATGAAGCTTGTACCCAGCTGGAAACCTACATCTGACAGTTCATCATGTGGAGCAAATAGTTCATATGGGGATCAGTATTTATGTCAAGTTGATGGAAGTCATTGGGATTCAGGGTTTATCAATCCTACATCAATGATTTCAGATATCTCAGCTGAGTACGGCGTCACTAATGTCTCAGGCACCACTGATCTCAAGGTTTTAGAATCAGACATGTATAGTTTTGATGAATGCTATAGAGGTTCAGATGGGTACTGTTCGAGTCCAGATTGTTTGGTTCATGGTCAGCTTAAGCAGAAGAAATATGAAGATGATTTTGGTGATTCTATCGTGATAAACGACTCAGCAATGAACTCTTCTATCTCGAGCCCTGATAGATCAAAAACTTGTAGCTTATCAAGCATTTGTTCCTTGTCAGAATTGTCTTTGATGGAGAAACATGCGTATGATGGGCTCAAAGTGGAGCTGGATTCAATTGATCTGCAGTTTCATCAACATTTTCTTGAGCTCTTGAAGATGAAGGAAGAGGCAATACATAACGCAAAGAAGAAGTGGATAACAAAGAAGAGAATAGCTGTTCATTAA

Protein Analysis

621

Amino Acids

69.87

Weight (kDa)

5.21

Isoelectric Point (pI)

35.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 5 - 104 5.9e-11 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 13 - 88 6.4e-08 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 717
AccB1I GGYRCC 1 cut(s) 1460
AccI GTMKAC 1 cut(s) 630
AciI CCGC 1 cut(s) 827
AclWI GGATC 7 cut(s) 59, 440, 761, 839, 904, 1130, 1359
AcsI RAATTY 3 cut(s) 50, 584, 1073
AcuI CTGAAG 4 cut(s) 197, 263, 960, 1260
AcyI GRCGYC 2 cut(s) 200, 1443
AfaI GTAC 5 cut(s) 356, 880, 1293, 1439, 1532
AflII CTTAAG 2 cut(s) 82, 1568
AflIII ACRYGT 1 cut(s) 1491
AjnI CCWGG 1 cut(s) 171
AjuI GAANNNNNNNTTGG 4 cut(s) 501, 533, 1578, 1610
Alw21I GWGCWC 2 cut(s) 837, 1788
Alw26I GTCTC 2 cut(s) 811, 1459
AlwI GGATC 7 cut(s) 59, 440, 761, 839, 904, 1130, 1359
AlwNI CAGNNNCTG 1 cut(s) 1190
Ama87I CYCGRG 2 cut(s) 596, 1642
AoxI GGCC 1 cut(s) 387
ApeKI GCWGC 1 cut(s) 547
ApoI RAATTY 3 cut(s) 50, 584, 1073
ArsI GACNNNNNNTTYG 2 cut(s) 470, 502
AsuHPI GGTGA 2 cut(s) 679, 1610
AvaI CYCGRG 2 cut(s) 596, 1642
BanI GGYRCC 1 cut(s) 1460
BanII GRGCYC 4 cut(s) 837, 1649, 1734, 1788
BarI GAAGNNNNNNTAC 2 cut(s) 1794, 1826
Bbv12I GWGCWC 2 cut(s) 837, 1788
BbvI GCAGC 1 cut(s) 559
BccI CCATC 8 cut(s) 398, 1028, 1118, 1207, 1367, 1520, 1702, 1721
BceAI ACGGC 1 cut(s) 1456
BcgI CGANNNNNNTGC 2 cut(s) 398, 432
BciT130I CCWGG 1 cut(s) 173
BciVI GTATCC 1 cut(s) 1258
BcoDI GTCTC 2 cut(s) 811, 1459
BfaI CTAG 1 cut(s) 659
BfmI CTRYAG 2 cut(s) 1513, 1760
BfrI CTTAAG 2 cut(s) 82, 1568
BfuI GTATCC 1 cut(s) 1258
BglII AGATCT 1 cut(s) 523
BisI GCNGC 1 cut(s) 548
BlpI GCTNAGC 1 cut(s) 1218
BlsI GCNGC 1 cut(s) 549
Bme1390I CCNGG 1 cut(s) 173
BmeT110I CYCGRG 2 cut(s) 596, 1642
BmiI GGNNCC 4 cut(s) 170, 594, 804, 1462
BmrFI CCNGG 1 cut(s) 173
BmrI ACTGGG 1 cut(s) 81
BmsI GCATC 1 cut(s) 952
BmuI ACTGGG 1 cut(s) 81
BplI GAGNNNNNCTC 2 cut(s) 754, 786
BpmI CTGGAG 1 cut(s) 564
Bpu1102I GCTNAGC 1 cut(s) 1218
BpuEI CTTGAG 4 cut(s) 367, 756, 1457, 1802
BsaHI GRCGYC 2 cut(s) 200, 1443
Bse1I ACTGG 2 cut(s) 76, 287
Bse3DI GCAATG 1 cut(s) 1632
BseBI CCWGG 1 cut(s) 173
BseGI GGATG 3 cut(s) 193, 961, 1025
BseMI GCAATG 1 cut(s) 1632
BseMII CTCAG 9 cut(s) 219, 766, 1050, 1209, 1251, 1425, 1443, 1470, 1635
BseNI ACTGG 2 cut(s) 76, 287
BseXI GCAGC 1 cut(s) 559
BseYI CCCAGC 2 cut(s) 1205, 1295
BsgI GTGCAG 1 cut(s) 690
BshFI GGCC 1 cut(s) 389
BshNI GGYRCC 1 cut(s) 1460
BsiHKAI GWGCWC 2 cut(s) 837, 1788
BsiHKCI CYCGRG 2 cut(s) 596, 1642
BsiSI CCGG 1 cut(s) 203
BslFI GGGAC 1 cut(s) 589
BsmAI GTCTC 2 cut(s) 811, 1459
BsmFI GGGAC 1 cut(s) 589
BsmI GAATGC 3 cut(s) 113, 436, 1514
BsnI GGCC 1 cut(s) 389
BsoBI CYCGRG 2 cut(s) 596, 1642
Bsp1286I GDGCHC 4 cut(s) 837, 1649, 1734, 1788
Bsp1720I GCTNAGC 1 cut(s) 1218
BspACI CCGC 1 cut(s) 827
BspANI GGCC 1 cut(s) 389
BspCNI CTCAG 9 cut(s) 220, 765, 1049, 1210, 1252, 1426, 1442, 1469, 1634
BspHI TCATGA 1 cut(s) 442
BspLI GGNNCC 4 cut(s) 170, 594, 804, 1462
BspMAI CTGCAG 1 cut(s) 1764
BspPI GGATC 7 cut(s) 59, 440, 761, 839, 904, 1130, 1359
BspT107I GGYRCC 1 cut(s) 1460
BspTI CTTAAG 2 cut(s) 82, 1568
BsrDI GCAATG 1 cut(s) 1632
BsrI ACTGG 2 cut(s) 76, 287
BssNI GRCGYC 2 cut(s) 200, 1443
Bst2UI CCWGG 1 cut(s) 173
Bst4CI ACNGT 4 cut(s) 41, 124, 1319, 1535
Bst6I CTCTTC 3 cut(s) 1639, 1797, 1838
BstACI GRCGYC 2 cut(s) 200, 1443
BstAFI CTTAAG 2 cut(s) 82, 1568
BstAPI GCANNNNNTGC 1 cut(s) 433
BstC8I GCNNGC 5 cut(s) 425, 656, 744, 825, 988
BstDEI CTNAG 9 cut(s) 228, 752, 1036, 1218, 1260, 1429, 1434, 1456, 1621
BstEII GGTNACC 1 cut(s) 724
BstF5I GGATG 3 cut(s) 193, 961, 1025
BstMAI GTCTC 2 cut(s) 811, 1459
BstMWI GCNNNNNNNGC 3 cut(s) 433, 1002, 1677
BstNI CCWGG 1 cut(s) 173
BstNSI RCATGY 5 cut(s) 182, 652, 658, 1495, 1721
BstPI GGTNACC 1 cut(s) 724
BstSCI CCNGG 1 cut(s) 171
BstSFI CTRYAG 2 cut(s) 1513, 1760
BstV1I GCAGC 1 cut(s) 559
BstX2I RGATCY 3 cut(s) 64, 523, 844
BstYI RGATCY 3 cut(s) 64, 523, 844
BsuI GTATCC 1 cut(s) 1258
BsuRI GGCC 1 cut(s) 389
BtgZI GCGATG 1 cut(s) 1096
BtsCI GGATG 3 cut(s) 193, 961, 1025
BtsIMutI CAGTG 1 cut(s) 1464
Cac8I GCNNGC 5 cut(s) 425, 656, 744, 825, 988
CaiI CAGNNNCTG 1 cut(s) 1190
CciI TCATGA 1 cut(s) 442
CseI GACGC 3 cut(s) 208, 994, 1432
Csp6I GTAC 5 cut(s) 355, 879, 1292, 1438, 1531
CviQI GTAC 5 cut(s) 355, 879, 1292, 1438, 1531
DdeI CTNAG 9 cut(s) 228, 752, 1036, 1218, 1260, 1429, 1434, 1456, 1621
Eam1104I CTCTTC 3 cut(s) 1639, 1797, 1838
EarI CTCTTC 3 cut(s) 1639, 1797, 1838
Ecl136II GAGCTC 2 cut(s) 835, 1786
Eco24I GRGCYC 4 cut(s) 837, 1649, 1734, 1788
Eco32I GATATC 1 cut(s) 1426
Eco53kI GAGCTC 2 cut(s) 835, 1786
Eco57I CTGAAG 4 cut(s) 197, 263, 960, 1260
Eco88I CYCGRG 2 cut(s) 596, 1642
Eco91I GGTNACC 1 cut(s) 724
EcoICRI GAGCTC 2 cut(s) 835, 1786
EcoO65I GGTNACC 1 cut(s) 724
EcoRI GAATTC 2 cut(s) 584, 1073
EcoRII CCWGG 1 cut(s) 171
EcoRV GATATC 1 cut(s) 1426
EcoT38I GRGCYC 4 cut(s) 837, 1649, 1734, 1788
FaqI GGGAC 1 cut(s) 589
FauNDI CATATG 1 cut(s) 1345
FblI GTMKAC 1 cut(s) 630
Fnu4HI GCNGC 1 cut(s) 548
FokI GGATG 3 cut(s) 200, 968, 1012
FriOI GRGCYC 4 cut(s) 837, 1649, 1734, 1788
Fsp4HI GCNGC 1 cut(s) 548
FspBI CTAG 1 cut(s) 659
GluI GCNGC 1 cut(s) 548
GsaI CCCAGC 2 cut(s) 1209, 1299
GsuI CTGGAG 1 cut(s) 564
HaeIII GGCC 1 cut(s) 389
HapII CCGG 1 cut(s) 203
HgaI GACGC 3 cut(s) 208, 994, 1432
Hin1I GRCGYC 2 cut(s) 200, 1443
HincII GTYRAC 1 cut(s) 631
HindII GTYRAC 1 cut(s) 631
HindIII AAGCTT 1 cut(s) 1286
HpaII CCGG 1 cut(s) 203
HphI GGTGA 2 cut(s) 679, 1610
Hpy166II GTNNAC 2 cut(s) 333, 631
Hpy8I GTNNAC 2 cut(s) 333, 631
Hpy99I CGWCG 2 cut(s) 611, 1010
HpyAV CCTTC 7 cut(s) 143, 354, 379, 715, 865, 1187, 1792
HpyCH4III ACNGT 4 cut(s) 41, 124, 1319, 1535
HpyF10VI GCNNNNNNNGC 3 cut(s) 433, 1002, 1677
HpyF3I CTNAG 9 cut(s) 228, 752, 1036, 1218, 1260, 1429, 1434, 1456, 1621
Hsp92I GRCGYC 2 cut(s) 200, 1443
LmnI GCTCC 9 cut(s) 110, 168, 205, 342, 598, 832, 874, 1331, 1741
Lsp1109I GCAGC 1 cut(s) 559
LweI GCATC 1 cut(s) 952
MaeI CTAG 1 cut(s) 659
MaeIII GTNAC 6 cut(s) 278, 667, 724, 1012, 1252, 1444
MfeI CAATTG 3 cut(s) 858, 1200, 1752
MflI RGATCY 3 cut(s) 64, 523, 844
MhlI GDGCHC 4 cut(s) 837, 1649, 1734, 1788
MlyI GAGTC 3 cut(s) 571, 1549, 1613
MmeI TCCRAC 2 cut(s) 92, 1053
MseI TTAA 5 cut(s) 83, 1082, 1265, 1569, 1861
MslI CAYNNNNRTG 4 cut(s) 372, 441, 653, 1722
MspA1I CMGCKG 3 cut(s) 1259, 1299, 1433
MspCI CTTAAG 2 cut(s) 82, 1568
MspI CCGG 1 cut(s) 203
MspR9I CCNGG 1 cut(s) 173
MunI CAATTG 3 cut(s) 858, 1200, 1752
Mva1269I GAATGC 3 cut(s) 113, 436, 1514
MvaI CCWGG 1 cut(s) 173
MwoI GCNNNNNNNGC 3 cut(s) 433, 1002, 1677
NdeI CATATG 1 cut(s) 1345
NlaIV GGNNCC 4 cut(s) 170, 594, 804, 1462
NmuCI GTSAC 3 cut(s) 667, 1252, 1444
NspI RCATGY 5 cut(s) 182, 652, 658, 1495, 1721
PaeI GCATGC 1 cut(s) 658
PaeR7I CTCGAG 1 cut(s) 1642
PagI TCATGA 1 cut(s) 442
PciI ACATGT 1 cut(s) 1491
PcsI WCGNNNNNNNCGW 1 cut(s) 1614
PctI GAATGC 3 cut(s) 113, 436, 1514
PfeI GAWTC 7 cut(s) 78, 412, 1056, 1388, 1484, 1601, 1748
PkrI GCNGC 1 cut(s) 549
PleI GAGTC 3 cut(s) 571, 1548, 1613
PpsI GAGTC 3 cut(s) 571, 1548, 1613
PscI ACATGT 1 cut(s) 1491
PsiI TTATAA 1 cut(s) 717
Psp124BI GAGCTC 2 cut(s) 837, 1788
Psp6I CCWGG 1 cut(s) 171
PspEI GGTNACC 1 cut(s) 724
PspFI CCCAGC 2 cut(s) 1205, 1295
PspGI CCWGG 1 cut(s) 171
PspN4I GGNNCC 4 cut(s) 170, 594, 804, 1462
PstI CTGCAG 1 cut(s) 1764
PstNI CAGNNNCTG 1 cut(s) 1190
PsuI RGATCY 3 cut(s) 64, 523, 844
PvuII CAGCTG 3 cut(s) 1259, 1299, 1433
RsaI GTAC 5 cut(s) 356, 880, 1293, 1439, 1532
RsaNI GTAC 5 cut(s) 355, 879, 1292, 1438, 1531
RseI CAYNNNNRTG 4 cut(s) 372, 441, 653, 1722
SacI GAGCTC 2 cut(s) 837, 1788
SalI GTCGAC 1 cut(s) 629
SaqAI TTAA 5 cut(s) 83, 1082, 1265, 1569, 1861
SatI GCNGC 1 cut(s) 548
SchI GAGTC 3 cut(s) 571, 1549, 1613
ScrFI CCNGG 1 cut(s) 173
SduI GDGCHC 4 cut(s) 837, 1649, 1734, 1788
SfaNI GCATC 1 cut(s) 952
SfcI CTRYAG 2 cut(s) 1513, 1760
Sfr274I CTCGAG 1 cut(s) 1642
SlaI CTCGAG 1 cut(s) 1642
SmiMI CAYNNNNRTG 4 cut(s) 372, 441, 653, 1722
SmlI CTYRAG 7 cut(s) 82, 346, 771, 1472, 1568, 1642, 1781
SmoI CTYRAG 7 cut(s) 82, 346, 771, 1472, 1568, 1642, 1781
SphI GCATGC 1 cut(s) 658
SsiI CCGC 1 cut(s) 827
SspMI CTAG 1 cut(s) 659
SstI GAGCTC 2 cut(s) 837, 1788
StyD4I CCNGG 1 cut(s) 171
TaaI ACNGT 4 cut(s) 41, 124, 1319, 1535
TaqI TCGA 5 cut(s) 418, 630, 1008, 1538, 1643
TfiI GAWTC 7 cut(s) 78, 412, 1056, 1388, 1484, 1601, 1748
Tru1I TTAA 5 cut(s) 83, 1082, 1265, 1569, 1861
Tru9I TTAA 5 cut(s) 83, 1082, 1265, 1569, 1861
TscAI CASTG 1 cut(s) 1471
TseFI GTSAC 3 cut(s) 667, 1252, 1444
TseI GCWGC 1 cut(s) 547
Tsp45I GTSAC 3 cut(s) 667, 1252, 1444
TspGWI ACGGA 2 cut(s) 338, 1240
TspRI CASTG 1 cut(s) 1471
Vha464I CTTAAG 2 cut(s) 82, 1568
XapI RAATTY 3 cut(s) 50, 584, 1073
XceI RCATGY 5 cut(s) 182, 652, 658, 1495, 1721
XhoI CTCGAG 1 cut(s) 1642
XmiI GTMKAC 1 cut(s) 630
XspI CTAG 1 cut(s) 659
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.