Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr13

Orthogroup ID

OG0002495

Physical Location & Seq

Genomic Coordinates Forward (+)

17819387 .. 17820659

Gene Structure 1273 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD13G1200200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1230 bp

ATGGACTCCTGTAGTGGTTTGGAAGATGCTGGCGTTGTGGAGAAAGATCCGACTGGGAGATACTTGCGGTATGACGAAGTGTTGGGGAGGGGAGCATTCAAGACTGTATATAAGGCATTTGATGAAGTCGAAGGAGTCGAAGTAGCTTGGTGCCAAGTGAATATCAAAGGAGTAGAAGAAGTGGAAAGATTGTATTCGGAGGTTCATCTGCTGAAGTCACTGAAACATCAAAACATCGTACAGTTCCATAACTCTTGGGTGGATGATAAGAACATGACCATCAACATGATAACAGAGTTATTCACTTCCGGGAGCTTGAGGCAGTACCGAAATAAGCATAAGAAGGTCGATATGAAAGCCATCAAGAATTGGGCTAGACAGATTCTTCGAGGTCTGGACTATCTGCATTCTCACAATCCTCCAATTATTCATAGAGATTTGAAGTGTGACAACCTATTTGTCAATGGATTTAATGGAGAACTTAAAATCGGAGATCTCGGTTTGGCGATTGTCATGCAGCAGCCTACTGCTCATAGCATAATTGGCACCCCTGAATTCATGGCTCCAGAGCTTTATGACGAGGAATACAATGAATTAGTCGACATCTATTCTTTTGGCATGTGCATGCTAGAGATGGTGACTTGTGAATACCCTTATAGTGAATGTAAAAATCTGGCGCAAATTTATAAAAGGGTTACCTCTGGTGTAAAGCCTGCTTCCCTCAGTAAAGTAGACAATCCTCAAATCAAGCAGTTCATAGAGAAGTGTCTAGTTCCAGCTTCTATGAGATTGTCTGCGGCGGAACTCTTGAAAGATCCAATCCTTGCAACTGACAACTTGAATGAGTCCAGCTGTGATCTTTCACAACTACAAAAGTTGTTTACCTTGCCAGAGCCCACATCTAACTCGTCAGTGCTGGAGTTACATTGTTTCTCTAAGAATAATGAGTTCAGGTTAAGAGCGGGGAAAAATCCCGATAACACAGTGTCTTTAACTTTGCGCATTGCTGATACATGTGGTCTTGTGAGGAATATCAGGTTTGATTTCTATCTCGATTCTGATACTGTGATTTCAATTGCTTGGGAGATGGTTGAGCAACTTGATCTTTCACATGAAGACGTCTCTGTCGTAGCTGAGCTACTTGATAACTCGATTGTGAAGCTTGTACCCGGATGGAAACCTTCATCGGAGTTGTCTCTAGCGGACAAAGATAGTATTTCTCGAAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0008152 GO:0009314 GO:0009416 GO:0009628 GO:0009648 GO:0009791 GO:0009909 GO:0009911 GO:0009987 GO:0010228 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0022414 GO:0023052 GO:0032501 GO:0032502 GO:0035556 GO:0036211 GO:0042802 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0046777 GO:0048518 GO:0048573 GO:0048580 GO:0048582 GO:0048608 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051094 GO:0051239 GO:0051240 GO:0051716 GO:0061458 GO:0065007 GO:0071704 GO:0140096 GO:1901564 GO:2000026 GO:2000241 GO:2000243

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

OSR1_C Pkinase

Protein Analysis

410

Amino Acids

46.34

Weight (kDa)

5.21

Isoelectric Point (pI)

34.43

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PK_Tyr_Ser-Thr	PF07714	23 - 258	1.1e-36	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	25 - 273	5.5e-52	Protein kinase domain
OSR1_C	PF12202	331 - 385	6.8e-06	Oxidative-stress-responsive kinase 1 C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002495)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G64630 AT5G41990
fragaria_vesca	FvH4_5g11251 FvH4_5g11251 FvH4_6g41800 FvH4_6g41920 FvH4_6g42720
malus_domestica	MD06G1114800.v1.1 MD06G1115000.v1.1 MD13G1200200.v1.1 MD14G1136200.v1.1
prunus_persica	Prupe.5G127500_v2.0.a1 Prupe.5G127500_v2.0.a1
pyrus_communis	pycom06g10760 pycom13g17380 pycom13g17390 pycom14g10980
rosa_chinensis	RchiOBHm_Chr2g0157811 RchiOBHm_Chr7g0186611
rosa_laevigata	RLG00000004829 RLG00000021022
rosa_multiflora	Rmu_co8298477.1_g000001 Rmu_sc0000645.1_g000017 Rmu_sc0007722.1_g000019
rosa_roxburghii	Rroxscaffold_2G00091930 Rroxscaffold_3G00268010
rosa_rugosa	Rorug02G0463900 Rorug06G0475200 Rorug06G0475300 Rorug06G0475400
rosa_samantha	Rh2AG529200 Rh2BG543300 Rh2CG513500 Rh2DG552100 Rh7AG065500 Rh7BG081400 Rh7CG082300 Rh7DG083300
rosa_wichuraiana	Rw2G043750 Rw7G006920 Rw7G007140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	687
AasI	GACNNNNNNGTC	1 cut(s)	1124
AatII	GACGTC	1 cut(s)	1122
Acc16I	TGCGCA	1 cut(s)	1001
AccB1I	GGYRCC	2 cut(s)	150, 545
AccBSI	CCGCTC	1 cut(s)	962
AccI	GTMKAC	2 cut(s)	600, 732
AciI	CCGC	5 cut(s)	67, 797, 800, 962, 1202
AclWI	GGATC	2 cut(s)	41, 809
AcsI	RAATTY	2 cut(s)	554, 681
AcuI	CTGAAG	1 cut(s)	233
AcyI	GRCGYC	1 cut(s)	1119
AfaI	GTAC	3 cut(s)	240, 326, 1167
AflIII	ACRYGT	1 cut(s)	1013
AgsI	TTSAA	5 cut(s)	100, 442, 811, 841, 1074
AluBI	AGCT	8 cut(s)	146, 315, 571, 779, 852, 1133, 1138, 1162
AluI	AGCT	8 cut(s)	146, 315, 571, 779, 852, 1133, 1138, 1162
Alw26I	GTCTC	2 cut(s)	1126, 1200
AlwI	GGATC	2 cut(s)	41, 809
ApeKI	GCWGC	2 cut(s)	517, 520
ApoI	RAATTY	2 cut(s)	554, 681
ArsI	GACNNNNNNTTYG	4 cut(s)	369, 401, 440, 472
AspLEI	GCGC	2 cut(s)	679, 1002
AsuC2I	CCSGG	2 cut(s)	310, 1170
AsuHPI	GGTGA	1 cut(s)	649
BanI	GGYRCC	2 cut(s)	150, 545
BanII	GRGCYC	1 cut(s)	897
BbsI	GAAGAC	1 cut(s)	1122
BbvI	GCAGC	2 cut(s)	529, 532
BccI	CCATC	5 cut(s)	287, 368, 628, 1081, 1167
BcgI	CGANNNNNNTGC	2 cut(s)	496, 530
BcnI	CCSGG	2 cut(s)	310, 1170
BcoDI	GTCTC	2 cut(s)	1126, 1200
BfaI	CTAG	4 cut(s)	375, 629, 770, 1199
BfmI	CTRYAG	1 cut(s)	10
BglII	AGATCT	1 cut(s)	493
BisI	GCNGC	3 cut(s)	518, 521, 798
BlpI	GCTNAGC	1 cut(s)	1134
BlsI	GCNGC	3 cut(s)	519, 522, 799
Bme1390I	CCNGG	2 cut(s)	310, 1170
BmiI	GGNNCC	3 cut(s)	152, 547, 564
BmrFI	CCNGG	2 cut(s)	310, 1170
BmrI	ACTGGG	1 cut(s)	63
BmsI	GCATC	1 cut(s)	16
BmuI	ACTGGG	1 cut(s)	63
BpiI	GAAGAC	1 cut(s)	1122
BpmI	CTGGAG	2 cut(s)	549, 938
Bpu1102I	GCTNAGC	1 cut(s)	1134
BpuEI	CTTGAG	1 cut(s)	337
BpuMI	CCSGG	2 cut(s)	310, 1170
BsaBI	GATNNNNATC	1 cut(s)	1047
BsaHI	GRCGYC	1 cut(s)	1119
BsaXI	ACNNNNNCTCC	2 cut(s)	126, 156
Bse1I	ACTGG	1 cut(s)	58
Bse3DI	GCAATG	1 cut(s)	1002
Bse8I	GATNNNNATC	1 cut(s)	1047
BseGI	GGATG	2 cut(s)	268, 1178
BseJI	GATNNNNATC	1 cut(s)	1047
BseMI	GCAATG	1 cut(s)	1002
BseMII	CTCAG	2 cut(s)	736, 1125
BseNI	ACTGG	1 cut(s)	58
BseXI	GCAGC	2 cut(s)	529, 532
BshNI	GGYRCC	2 cut(s)	150, 545
BsiSI	CCGG	2 cut(s)	309, 1170
BsmAI	GTCTC	2 cut(s)	1126, 1200
BsmBI	CGTCTC	1 cut(s)	1126
BsmI	GAATGC	2 cut(s)	95, 406
Bsp1286I	GDGCHC	1 cut(s)	897
Bsp143I	GATC	5 cut(s)	46, 493, 814, 856, 1102
Bsp1720I	GCTNAGC	1 cut(s)	1134
BspACI	CCGC	5 cut(s)	67, 797, 800, 962, 1202
BspCNI	CTCAG	2 cut(s)	735, 1126
BspLI	GGNNCC	3 cut(s)	152, 547, 564
BspPI	GGATC	2 cut(s)	41, 809
BspT107I	GGYRCC	2 cut(s)	150, 545
BsrBI	CCGCTC	1 cut(s)	962
BsrDI	GCAATG	1 cut(s)	1002
BsrI	ACTGG	1 cut(s)	58
BssMI	GATC	5 cut(s)	46, 493, 814, 856, 1102
BssNI	GRCGYC	1 cut(s)	1119
Bst4CI	ACNGT	4 cut(s)	106, 243, 985, 1066
BstACI	GRCGYC	1 cut(s)	1119
BstC8I	GCNNGC	3 cut(s)	31, 626, 714
BstDEI	CTNAG	3 cut(s)	722, 936, 1134
BstEII	GGTNACC	1 cut(s)	694
BstF5I	GGATG	2 cut(s)	268, 1178
BstHHI	GCGC	2 cut(s)	679, 1002
BstKTI	GATC	5 cut(s)	49, 496, 817, 859, 1105
BstMAI	GTCTC	2 cut(s)	1126, 1200
BstMBI	GATC	5 cut(s)	46, 493, 814, 856, 1102
BstMWI	GCNNNNNNNGC	1 cut(s)	543
BstNSI	RCATGY	3 cut(s)	622, 628, 1017
BstPI	GGTNACC	1 cut(s)	694
BstSCI	CCNGG	2 cut(s)	308, 1168
BstSFI	CTRYAG	1 cut(s)	10
BstV1I	GCAGC	2 cut(s)	529, 532
BstV2I	GAAGAC	1 cut(s)	1122
BstX2I	RGATCY	3 cut(s)	46, 493, 814
BstYI	RGATCY	3 cut(s)	46, 493, 814
BtsCI	GGATG	2 cut(s)	268, 1178
BtsIMutI	CAGTG	3 cut(s)	218, 918, 990
Cac8I	GCNNGC	3 cut(s)	31, 626, 714
CfoI	GCGC	2 cut(s)	679, 1002
Csp6I	GTAC	3 cut(s)	239, 325, 1166
CviAII	CATG	8 cut(s)	274, 286, 514, 559, 619, 625, 1014, 1112
CviQI	GTAC	3 cut(s)	239, 325, 1166
DdeI	CTNAG	3 cut(s)	722, 936, 1134
DpnI	GATC	5 cut(s)	48, 495, 816, 858, 1104
DpnII	GATC	5 cut(s)	46, 493, 814, 856, 1102
DrdI	GACNNNNNNGTC	1 cut(s)	1124
DseDI	GACNNNNNNGTC	1 cut(s)	1124
EciI	GGCGGA	1 cut(s)	815
Eco24I	GRGCYC	1 cut(s)	897
Eco57I	CTGAAG	1 cut(s)	233
Eco91I	GGTNACC	1 cut(s)	694
EcoO65I	GGTNACC	1 cut(s)	694
EcoRI	GAATTC	1 cut(s)	554
EcoT38I	GRGCYC	1 cut(s)	897
Esp3I	CGTCTC	1 cut(s)	1126
FaeI	CATG	8 cut(s)	277, 289, 517, 562, 622, 628, 1017, 1115
FatI	CATG	8 cut(s)	273, 285, 513, 558, 618, 624, 1013, 1111
FauI	CCCGC	1 cut(s)	955
FblI	GTMKAC	2 cut(s)	600, 732
Fnu4HI	GCNGC	3 cut(s)	518, 521, 798
FokI	GGATG	2 cut(s)	275, 1185
FriOI	GRGCYC	1 cut(s)	897
Fsp4HI	GCNGC	3 cut(s)	518, 521, 798
FspBI	CTAG	4 cut(s)	375, 629, 770, 1199
FspI	TGCGCA	1 cut(s)	1001
GlaI	GCGC	2 cut(s)	678, 1001
GluI	GCNGC	3 cut(s)	518, 521, 798
GsuI	CTGGAG	2 cut(s)	549, 938
HapII	CCGG	2 cut(s)	309, 1170
HhaI	GCGC	2 cut(s)	679, 1002
Hin1I	GRCGYC	1 cut(s)	1119
Hin1II	CATG	8 cut(s)	277, 289, 517, 562, 622, 628, 1017, 1115
Hin6I	GCGC	2 cut(s)	677, 1000
HinP1I	GCGC	2 cut(s)	677, 1000
HincII	GTYRAC	1 cut(s)	601
HindII	GTYRAC	1 cut(s)	601
HindIII	AAGCTT	1 cut(s)	1160
HinfI	GANTC	5 cut(s)	5, 135, 382, 845, 1055
HpaII	CCGG	2 cut(s)	309, 1170
HphI	GGTGA	1 cut(s)	649
Hpy166II	GTNNAC	3 cut(s)	601, 733, 882
Hpy188I	TCNGA	5 cut(s)	51, 199, 491, 1060, 1189
Hpy188III	TCNNGA	8 cut(s)	100, 364, 395, 566, 808, 974, 1052, 1221
Hpy8I	GTNNAC	3 cut(s)	601, 733, 882
HpyAV	CCTTC	3 cut(s)	125, 337, 1191
HpyCH4III	ACNGT	4 cut(s)	106, 243, 985, 1066
HpyCH4IV	ACGT	1 cut(s)	1119
HpyCH4V	TGCA	4 cut(s)	406, 517, 624, 827
HpyF10VI	GCNNNNNNNGC	1 cut(s)	543
HpyF3I	CTNAG	3 cut(s)	722, 936, 1134
HpySE526I	ACGT	1 cut(s)	1119
Hsp92I	GRCGYC	1 cut(s)	1119
Hsp92II	CATG	8 cut(s)	277, 289, 517, 562, 622, 628, 1017, 1115
HspAI	GCGC	2 cut(s)	677, 1000
Kzo9I	GATC	5 cut(s)	46, 493, 814, 856, 1102
LmnI	GCTCC	3 cut(s)	92, 312, 568
Lsp1109I	GCAGC	2 cut(s)	529, 532
LweI	GCATC	1 cut(s)	16
MaeI	CTAG	4 cut(s)	375, 629, 770, 1199
MaeII	ACGT	1 cut(s)	1119
MaeIII	GTNAC	5 cut(s)	216, 446, 637, 694, 921
MalI	GATC	5 cut(s)	48, 495, 816, 858, 1104
MbiI	CCGCTC	1 cut(s)	962
MboI	GATC	5 cut(s)	46, 493, 814, 856, 1102
MboII	GAAGA	4 cut(s)	35, 188, 377, 1127
MfeI	CAATTG	1 cut(s)	1074
MflI	RGATCY	3 cut(s)	46, 493, 814
MhlI	GDGCHC	1 cut(s)	897
MluCI	AATT	8 cut(s)	367, 423, 540, 554, 593, 681, 1074, 1225
MlyI	GAGTC	2 cut(s)	144, 854
MmeI	TCCRAC	1 cut(s)	74
MseI	TTAA	5 cut(s)	471, 483, 956, 992, 1228
MslI	CAYNNNNRTG	2 cut(s)	284, 623
MspA1I	CMGCKG	1 cut(s)	852
MspI	CCGG	2 cut(s)	309, 1170
MspR9I	CCNGG	2 cut(s)	310, 1170
MunI	CAATTG	1 cut(s)	1074
Mva1269I	GAATGC	2 cut(s)	95, 406
MwoI	GCNNNNNNNGC	1 cut(s)	543
NciI	CCSGG	2 cut(s)	310, 1170
NdeII	GATC	5 cut(s)	46, 493, 814, 856, 1102
NlaIII	CATG	8 cut(s)	277, 289, 517, 562, 622, 628, 1017, 1115
NlaIV	GGNNCC	3 cut(s)	152, 547, 564
NmuCI	GTSAC	3 cut(s)	216, 446, 637
NsbI	TGCGCA	1 cut(s)	1001
NspI	RCATGY	3 cut(s)	622, 628, 1017
PaeI	GCATGC	1 cut(s)	628
PciI	ACATGT	1 cut(s)	1013
PcsI	WCGNNNNNNNCGW	2 cut(s)	135, 1125
PctI	GAATGC	2 cut(s)	95, 406
PfeI	GAWTC	2 cut(s)	382, 1055
PfoI	TCCNGGA	1 cut(s)	308
PkrI	GCNGC	3 cut(s)	519, 522, 799
PleI	GAGTC	2 cut(s)	143, 853
PpsI	GAGTC	2 cut(s)	143, 853
PscI	ACATGT	1 cut(s)	1013
PsiI	TTATAA	1 cut(s)	687
PspEI	GGTNACC	1 cut(s)	694
PspN4I	GGNNCC	3 cut(s)	152, 547, 564
PsuI	RGATCY	3 cut(s)	46, 493, 814
PvuII	CAGCTG	1 cut(s)	852
RsaI	GTAC	3 cut(s)	240, 326, 1167
RsaNI	GTAC	3 cut(s)	239, 325, 1166
RseI	CAYNNNNRTG	2 cut(s)	284, 623
SalI	GTCGAC	1 cut(s)	599
SaqAI	TTAA	5 cut(s)	471, 483, 956, 992, 1228
SatI	GCNGC	3 cut(s)	518, 521, 798
Sau3AI	GATC	5 cut(s)	46, 493, 814, 856, 1102
SchI	GAGTC	2 cut(s)	144, 854
ScrFI	CCNGG	2 cut(s)	310, 1170
SduI	GDGCHC	1 cut(s)	897
SfaNI	GCATC	1 cut(s)	16
SfcI	CTRYAG	1 cut(s)	10
SmiMI	CAYNNNNRTG	2 cut(s)	284, 623
SmlI	CTYRAG	1 cut(s)	316
SmoI	CTYRAG	1 cut(s)	316
SphI	GCATGC	1 cut(s)	628
Sse9I	AATT	8 cut(s)	367, 423, 540, 554, 593, 681, 1074, 1225
SsiI	CCGC	5 cut(s)	67, 797, 800, 962, 1202
SspMI	CTAG	4 cut(s)	375, 629, 770, 1199
StyD4I	CCNGG	2 cut(s)	308, 1168
TaaI	ACNGT	4 cut(s)	106, 243, 985, 1066
TaiI	ACGT	1 cut(s)	1122
TaqI	TCGA	8 cut(s)	129, 138, 348, 388, 600, 1053, 1151, 1222
TasI	AATT	8 cut(s)	367, 423, 540, 554, 593, 681, 1074, 1225
TauI	GCSGC	1 cut(s)	800
TfiI	GAWTC	2 cut(s)	382, 1055
Tru1I	TTAA	5 cut(s)	471, 483, 956, 992, 1228
Tru9I	TTAA	5 cut(s)	471, 483, 956, 992, 1228
TscAI	CASTG	3 cut(s)	225, 918, 990
TseFI	GTSAC	3 cut(s)	216, 446, 637
TseI	GCWGC	2 cut(s)	517, 520
Tsp45I	GTSAC	3 cut(s)	216, 446, 637
TspDTI	ATGAA	9 cut(s)	138, 194, 368, 419, 547, 606, 745, 1128, 1173
TspRI	CASTG	3 cut(s)	225, 918, 990
XapI	RAATTY	2 cut(s)	554, 681
XceI	RCATGY	3 cut(s)	622, 628, 1017
XmiI	GTMKAC	2 cut(s)	600, 732
XspI	CTAG	4 cut(s)	375, 629, 770, 1199
ZraI	GACGTC	1 cut(s)	1120

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.