Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0002495

Physical Location & Seq

Genomic Coordinates Forward (+)

13152544 .. 13153163

Gene Structure 620 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom13g17380.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 444 bp

ATGCCAATCGCTAGGTTTTCATCTCTAATCTCTCTCCCTCTCTCCGTCATTCAGTCTCTGGTTTTTAGGTTTGGGGATGCAGATAGCGCCATGGCTAAGTCTCGGATAGTTTTAACAACGGGGAGCTCCGCCGCGAACCGCCGAAATTCTGGTACAGAATTCGGGGACATGTGGTTTATGGGATGCAGTTTTCGTCTTCGATCAGCAGTTTTTGAGATACGTTTGTCTTTTCTCCGAGGAACGAAAGAAAATATTGTTCCTTTGCGGAGATTTAAGGTTATGGACTCCTGTAGTGGTTTGGAAGATGCTGGCGTTGTGGAGAAACTTTCCTCAAATATAAGATCGATCCGACTGGGAGATACTTGCGGTATGACGAAGTGTTGGGGAGGGGAGCATTCAAGACTGTATATAAGGCATTTGATGAAGTCGAAGGAGTCGAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0008152 GO:0009314 GO:0009416 GO:0009628 GO:0009648 GO:0009791 GO:0009909 GO:0009911 GO:0009987 GO:0010228 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0022414 GO:0023052 GO:0032501 GO:0032502 GO:0035556 GO:0036211 GO:0042802 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0046777 GO:0048518 GO:0048573 GO:0048580 GO:0048582 GO:0048608 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051094 GO:0051239 GO:0051240 GO:0051716 GO:0061458 GO:0065007 GO:0071704 GO:0140096 GO:1901564 GO:2000026 GO:2000241 GO:2000243

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

OSR1_C Pkinase

Protein Analysis

148

Amino Acids

16.41

Weight (kDa)

10.12

Isoelectric Point (pI)

55.11

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002495)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G64630 AT5G41990
fragaria_vesca	FvH4_5g11251 FvH4_5g11251 FvH4_6g41800 FvH4_6g41920 FvH4_6g42720
malus_domestica	MD06G1114800.v1.1 MD06G1115000.v1.1 MD13G1200200.v1.1 MD14G1136200.v1.1
prunus_persica	Prupe.5G127500_v2.0.a1 Prupe.5G127500_v2.0.a1
pyrus_communis	pycom06g10760 pycom13g17380 pycom13g17390 pycom14g10980
rosa_chinensis	RchiOBHm_Chr2g0157811 RchiOBHm_Chr7g0186611
rosa_laevigata	RLG00000004829 RLG00000021022
rosa_multiflora	Rmu_co8298477.1_g000001 Rmu_sc0000645.1_g000017 Rmu_sc0007722.1_g000019
rosa_roxburghii	Rroxscaffold_2G00091930 Rroxscaffold_3G00268010
rosa_rugosa	Rorug02G0463900 Rorug06G0475200 Rorug06G0475300 Rorug06G0475400
rosa_samantha	Rh2AG529200 Rh2BG543300 Rh2CG513500 Rh2DG552100 Rh7AG065500 Rh7BG081400 Rh7CG082300 Rh7DG083300
rosa_wichuraiana	Rw2G043750 Rw7G006920 Rw7G007140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	134
AciI	CCGC	5 cut(s)	129, 132, 139, 265, 366
AclWI	GGATC	1 cut(s)	340
AcsI	RAATTY	2 cut(s)	145, 158
AfaI	GTAC	1 cut(s)	154
AflIII	ACRYGT	1 cut(s)	168
AgsI	TTSAA	1 cut(s)	399
AluBI	AGCT	1 cut(s)	126
AluI	AGCT	1 cut(s)	126
Alw21I	GWGCWC	1 cut(s)	128
Alw26I	GTCTC	2 cut(s)	60, 105
AlwI	GGATC	1 cut(s)	340
AlwNI	CAGNNNCTG	1 cut(s)	58
ApoI	RAATTY	2 cut(s)	145, 158
AspLEI	GCGC	1 cut(s)	89
BaeI	ACNNNNGTAYC	2 cut(s)	209, 242
BanII	GRGCYC	1 cut(s)	128
BbsI	GAAGAC	1 cut(s)	188
Bbv12I	GWGCWC	1 cut(s)	128
BcoDI	GTCTC	2 cut(s)	60, 105
BfaI	CTAG	1 cut(s)	12
BfmI	CTRYAG	1 cut(s)	289
BfoI	RGCGCY	1 cut(s)	90
BisI	GCNGC	1 cut(s)	132
BlsI	GCNGC	1 cut(s)	133
BmrI	ACTGGG	1 cut(s)	362
BmsI	GCATC	3 cut(s)	67, 173, 295
BmuI	ACTGGG	1 cut(s)	362
BpiI	GAAGAC	1 cut(s)	188
Bsa29I	ATCGAT	1 cut(s)	344
BsaJI	CCNNGG	2 cut(s)	90, 235
BsaXI	ACNNNNNCTCC	1 cut(s)	425
Bse1I	ACTGG	1 cut(s)	357
BseCI	ATCGAT	1 cut(s)	344
BseDI	CCNNGG	2 cut(s)	90, 235
BseGI	GGATG	2 cut(s)	82, 188
BseNI	ACTGG	1 cut(s)	357
Bsh1236I	CGCG	1 cut(s)	134
BshVI	ATCGAT	1 cut(s)	344
BsiHKAI	GWGCWC	1 cut(s)	128
BslFI	GGGAC	1 cut(s)	179
BsmAI	GTCTC	2 cut(s)	60, 105
BsmFI	GGGAC	1 cut(s)	179
BsmI	GAATGC	1 cut(s)	394
Bsp1286I	GDGCHC	1 cut(s)	128
Bsp143I	GATC	3 cut(s)	200, 341, 345
Bsp19I	CCATGG	1 cut(s)	90
BspACI	CCGC	5 cut(s)	129, 132, 139, 265, 366
BspDI	ATCGAT	1 cut(s)	344
BspFNI	CGCG	1 cut(s)	134
BspPI	GGATC	1 cut(s)	340
BsrI	ACTGG	1 cut(s)	357
BssECI	CCNNGG	2 cut(s)	90, 235
BssMI	GATC	3 cut(s)	200, 341, 345
BssT1I	CCWWGG	1 cut(s)	90
Bst4CI	ACNGT	1 cut(s)	405
BstC8I	GCNNGC	1 cut(s)	310
BstDEI	CTNAG	1 cut(s)	96
BstDSI	CCRYGG	1 cut(s)	90
BstF5I	GGATG	2 cut(s)	82, 188
BstFNI	CGCG	1 cut(s)	134
BstH2I	RGCGCY	1 cut(s)	90
BstHHI	GCGC	1 cut(s)	89
BstKTI	GATC	3 cut(s)	203, 344, 348
BstMAI	GTCTC	2 cut(s)	60, 105
BstMBI	GATC	3 cut(s)	200, 341, 345
BstMWI	GCNNNNNNNGC	1 cut(s)	86
BstNSI	RCATGY	1 cut(s)	172
BstSFI	CTRYAG	1 cut(s)	289
BstUI	CGCG	1 cut(s)	134
BstV2I	GAAGAC	1 cut(s)	188
Bsu15I	ATCGAT	1 cut(s)	344
BsuTUI	ATCGAT	1 cut(s)	344
BtgI	CCRYGG	1 cut(s)	90
BtsCI	GGATG	2 cut(s)	82, 188
Cac8I	GCNNGC	1 cut(s)	310
CaiI	CAGNNNCTG	1 cut(s)	58
CfoI	GCGC	1 cut(s)	89
ClaI	ATCGAT	1 cut(s)	344
Csp6I	GTAC	1 cut(s)	153
CviAII	CATG	2 cut(s)	91, 169
CviJI	RGCY	2 cut(s)	95, 126
CviKI_1	RGCY	2 cut(s)	95, 126
CviQI	GTAC	1 cut(s)	153
DdeI	CTNAG	1 cut(s)	96
DpnI	GATC	3 cut(s)	202, 343, 347
DpnII	GATC	3 cut(s)	200, 341, 345
EciI	GGCGGA	1 cut(s)	118
Ecl136II	GAGCTC	1 cut(s)	126
Eco130I	CCWWGG	1 cut(s)	90
Eco24I	GRGCYC	1 cut(s)	128
Eco53kI	GAGCTC	1 cut(s)	126
EcoICRI	GAGCTC	1 cut(s)	126
EcoRI	GAATTC	1 cut(s)	158
EcoT14I	CCWWGG	1 cut(s)	90
EcoT38I	GRGCYC	1 cut(s)	128
ErhI	CCWWGG	1 cut(s)	90
FaeI	CATG	2 cut(s)	94, 172
FaiI	YATR	8 cut(s)	92, 170, 179, 281, 338, 371, 408, 410
FaqI	GGGAC	1 cut(s)	179
FatI	CATG	2 cut(s)	90, 168
Fnu4HI	GCNGC	1 cut(s)	132
FokI	GGATG	2 cut(s)	89, 195
FriOI	GRGCYC	1 cut(s)	128
Fsp4HI	GCNGC	1 cut(s)	132
FspBI	CTAG	1 cut(s)	12
GlaI	GCGC	1 cut(s)	88
GluI	GCNGC	1 cut(s)	132
HaeII	RGCGCY	1 cut(s)	90
HhaI	GCGC	1 cut(s)	89
Hin1II	CATG	2 cut(s)	94, 172
Hin6I	GCGC	1 cut(s)	87
HinP1I	GCGC	1 cut(s)	87
HinfI	GANTC	2 cut(s)	284, 434
Hpy188I	TCNGA	3 cut(s)	105, 236, 350
Hpy188III	TCNNGA	1 cut(s)	399
HpyAV	CCTTC	1 cut(s)	424
HpyCH4III	ACNGT	1 cut(s)	405
HpyCH4IV	ACGT	1 cut(s)	220
HpyCH4V	TGCA	2 cut(s)	80, 186
HpyF10VI	GCNNNNNNNGC	1 cut(s)	86
HpyF3I	CTNAG	1 cut(s)	96
HpySE526I	ACGT	1 cut(s)	220
Hsp92II	CATG	2 cut(s)	94, 172
HspAI	GCGC	1 cut(s)	87
Kzo9I	GATC	3 cut(s)	200, 341, 345
LmnI	GCTCC	3 cut(s)	123, 131, 391
LpnPI	CCDG	5 cut(s)	44, 135, 294, 301, 338
LweI	GCATC	3 cut(s)	67, 173, 295
MaeI	CTAG	1 cut(s)	12
MaeII	ACGT	1 cut(s)	220
MalI	GATC	3 cut(s)	202, 343, 347
MboI	GATC	3 cut(s)	200, 341, 345
MboII	GAAGA	2 cut(s)	188, 314
MhlI	GDGCHC	1 cut(s)	128
MluCI	AATT	2 cut(s)	145, 158
MlyI	GAGTC	2 cut(s)	278, 443
MmeI	TCCRAC	1 cut(s)	373
MnlI	CCTC	4 cut(s)	48, 230, 340, 380
MseI	TTAA	2 cut(s)	113, 273
Mva1269I	GAATGC	1 cut(s)	394
MvnI	CGCG	1 cut(s)	134
MwoI	GCNNNNNNNGC	1 cut(s)	86
NcoI	CCATGG	1 cut(s)	90
NdeII	GATC	3 cut(s)	200, 341, 345
NlaIII	CATG	2 cut(s)	94, 172
NspI	RCATGY	1 cut(s)	172
PciI	ACATGT	1 cut(s)	168
PcsI	WCGNNNNNNNCGW	1 cut(s)	434
PctI	GAATGC	1 cut(s)	394
PkrI	GCNGC	1 cut(s)	133
PleI	GAGTC	2 cut(s)	278, 442
PpsI	GAGTC	2 cut(s)	278, 442
PscI	ACATGT	1 cut(s)	168
Psp124BI	GAGCTC	1 cut(s)	128
PstNI	CAGNNNCTG	1 cut(s)	58
RsaI	GTAC	1 cut(s)	154
RsaNI	GTAC	1 cut(s)	153
SacI	GAGCTC	1 cut(s)	128
SaqAI	TTAA	2 cut(s)	113, 273
SatI	GCNGC	1 cut(s)	132
Sau3AI	GATC	3 cut(s)	200, 341, 345
SchI	GAGTC	2 cut(s)	278, 443
SduI	GDGCHC	1 cut(s)	128
SetI	ASST	5 cut(s)	17, 71, 128, 223, 279
SfaNI	GCATC	3 cut(s)	67, 173, 295
SfcI	CTRYAG	1 cut(s)	289
Sse9I	AATT	2 cut(s)	145, 158
SsiI	CCGC	5 cut(s)	129, 132, 139, 265, 366
SspI	AATATT	1 cut(s)	253
SspMI	CTAG	1 cut(s)	12
SstI	GAGCTC	1 cut(s)	128
StyI	CCWWGG	1 cut(s)	90
TaaI	ACNGT	1 cut(s)	405
TaiI	ACGT	1 cut(s)	223
TaqI	TCGA	4 cut(s)	199, 344, 428, 437
TasI	AATT	2 cut(s)	145, 158
TauI	GCSGC	1 cut(s)	134
Tru1I	TTAA	2 cut(s)	113, 273
Tru9I	TTAA	2 cut(s)	113, 273
TspDTI	ATGAA	2 cut(s)	9, 437
TspGWI	ACGGA	1 cut(s)	34
XapI	RAATTY	2 cut(s)	145, 158
XceI	RCATGY	1 cut(s)	172
XspI	CTAG	1 cut(s)	12

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.