Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0002495

Physical Location & Seq

Genomic Coordinates Reverse (-)

59765210 .. 59768702

Gene Structure 3493 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0475300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 840 bp

ATGGGCGATGCCAAAGCGACGTCGTATTACCTCCCTCCCGGCTGCCGATTCTACCCCTCCGAGGAGCAGCTCCTCTGCTACTACCTCTCCCACCAGAACAGCGCCGGCCAGGCCAGCTCCGGCAACGGTGGCTATGATTTGATCAAGGAGCTCGACTTGTACGACCACGACCCCTTTGATTTGCCCGACTATGCCTGCTACTCGTACGGCCACGGCGGACGGAGGCGGCACTGGTACTGCTACACGGTTAGGGTTGTGAAGGAGCGGCGGGCCAGGAGCGGGTATTGGAGGAGGAAAGGAAGGGTTAGGGACGTCGTGGGCCGCGGAGGGAAGGCGGTGTTGGGCCGGAGGAGTAGCTATGAGTTTTATTTGGGGAATTCGCCCAAGACGGCGGTGAGGACTGACTGGGTGCTCTATCAGTATGCTCAGGTTGATCACGTTCAGGCCTCTTTTGTCCTGTGCCGAGTATTTGTCAGATCTCAGGGTGGAACTAGCAAATCAGACAATGGCTTAAGTTCTTGTGCTGAAGAAACTGTTTCCACAGTACGTCACATTGGAATTCAGCATGGTGGATTTTGTACTCCTCATATTGTTCCTGAGATTCACGGTGACAAATCTGTGCCTAGGAACACTGACAAGTCAAAAGATCAAATGACACTGGAGACTGAAGTTGATAAGCAAGTCGAAACTGGGCCTCTATCAAGTATTCAGACTAATGAACAGGTGCTGTCATCTGTGCTCGGTGTTGGTAATCCATTGTTGCTTGATGGTTTGGCCACCGAGCATTTACTATCCCTTATAGAGGGAGACTTTATAGAGTTGGATGATCTCATCGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0008152 GO:0009314 GO:0009416 GO:0009628 GO:0009648 GO:0009791 GO:0009909 GO:0009911 GO:0009987 GO:0010228 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0022414 GO:0023052 GO:0032501 GO:0032502 GO:0035556 GO:0036211 GO:0042802 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0046777 GO:0048518 GO:0048573 GO:0048580 GO:0048582 GO:0048608 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051094 GO:0051239 GO:0051240 GO:0051716 GO:0061458 GO:0065007 GO:0071704 GO:0140096 GO:1901564 GO:2000026 GO:2000241 GO:2000243

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

OSR1_C Pkinase

Protein Analysis

279

Amino Acids

31.2

Weight (kDa)

6.2

Isoelectric Point (pI)

51.92

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAM	PF02365	12 - 142	2.5e-21	No apical meristem (NAM) protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002495)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G64630 AT5G41990
fragaria_vesca	FvH4_5g11251 FvH4_5g11251 FvH4_6g41800 FvH4_6g41920 FvH4_6g42720
malus_domestica	MD06G1114800.v1.1 MD06G1115000.v1.1 MD13G1200200.v1.1 MD14G1136200.v1.1
prunus_persica	Prupe.5G127500_v2.0.a1 Prupe.5G127500_v2.0.a1
pyrus_communis	pycom06g10760 pycom13g17380 pycom13g17390 pycom14g10980
rosa_chinensis	RchiOBHm_Chr2g0157811 RchiOBHm_Chr7g0186611
rosa_laevigata	RLG00000004829 RLG00000021022
rosa_multiflora	Rmu_co8298477.1_g000001 Rmu_sc0000645.1_g000017 Rmu_sc0007722.1_g000019
rosa_roxburghii	Rroxscaffold_2G00091930 Rroxscaffold_3G00268010
rosa_rugosa	Rorug02G0463900 Rorug06G0475200 Rorug06G0475300 Rorug06G0475400
rosa_samantha	Rh2AG529200 Rh2BG543300 Rh2CG513500 Rh2DG552100 Rh7AG065500 Rh7BG081400 Rh7CG082300 Rh7DG083300
rosa_wichuraiana	Rw2G043750 Rw7G006920 Rw7G007140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	2 cut(s)	23, 315
AccBSI	CCGCTC	2 cut(s)	265, 279
AccII	CGCG	1 cut(s)	324
AciI	CCGC	9 cut(s)	216, 226, 265, 268, 279, 322, 324, 335, 392
AcoI	YGGCCR	3 cut(s)	106, 208, 774
AcsI	RAATTY	2 cut(s)	376, 558
AcuI	CTGAAG	2 cut(s)	546, 687
AcyI	GRCGYC	2 cut(s)	20, 312
AfaI	GTAC	5 cut(s)	161, 206, 236, 546, 580
AfiI	CCNNNNNNNGG	3 cut(s)	61, 279, 802
AflII	CTTAAG	1 cut(s)	511
AjnI	CCWGG	2 cut(s)	108, 272
AjuI	GAANNNNNNNTTGG	2 cut(s)	323, 355
AluBI	AGCT	4 cut(s)	70, 117, 151, 357
AluI	AGCT	4 cut(s)	70, 117, 151, 357
Alw21I	GWGCWC	3 cut(s)	153, 414, 741
Alw26I	GTCTC	2 cut(s)	656, 801
AlwNI	CAGNNNCTG	1 cut(s)	727
AoxI	GGCC	9 cut(s)	106, 111, 208, 270, 319, 343, 444, 692, 774
ApeKI	GCWGC	2 cut(s)	42, 67
ApoI	RAATTY	2 cut(s)	376, 558
AspA2I	CCTAGG	1 cut(s)	623
AspLEI	GCGC	1 cut(s)	104
AspS9I	GGNCC	4 cut(s)	270, 319, 343, 692
AsuC2I	CCSGG	1 cut(s)	39
AsuHPI	GGTGA	2 cut(s)	406, 620
AvrII	CCTAGG	1 cut(s)	623
BalI	TGGCCA	1 cut(s)	776
BanII	GRGCYC	1 cut(s)	153
Bbv12I	GWGCWC	3 cut(s)	153, 414, 741
BbvI	GCAGC	2 cut(s)	29, 79
BccI	CCATC	1 cut(s)	761
BceAI	ACGGC	3 cut(s)	223, 229, 405
BciT130I	CCWGG	2 cut(s)	110, 274
BclI	TGATCA	2 cut(s)	141, 433
BcnI	CCSGG	1 cut(s)	39
BcoDI	GTCTC	2 cut(s)	656, 801
BfaI	CTAG	2 cut(s)	492, 624
BfoI	RGCGCY	1 cut(s)	105
BfrI	CTTAAG	1 cut(s)	511
BglI	GCCNNNNNGGC	1 cut(s)	110
BglII	AGATCT	1 cut(s)	476
BisI	GCNGC	5 cut(s)	43, 68, 227, 266, 322
BlnI	CCTAGG	1 cut(s)	623
BlsI	GCNGC	5 cut(s)	44, 69, 228, 267, 323
Bme1390I	CCNGG	3 cut(s)	39, 110, 274
BmgT120I	GGNCC	4 cut(s)	270, 319, 343, 692
BmrFI	CCNGG	3 cut(s)	39, 110, 274
BmrI	ACTGGG	2 cut(s)	415, 699
BmuI	ACTGGG	2 cut(s)	415, 699
BpmI	CTGGAG	1 cut(s)	680
Bpu10I	CCTNAGC	1 cut(s)	426
BpuMI	CCSGG	1 cut(s)	39
BsaHI	GRCGYC	2 cut(s)	20, 312
BsaJI	CCNNGG	4 cut(s)	60, 211, 322, 623
BsaXI	ACNNNNNCTCC	2 cut(s)	71, 101
Bsc4I	CCNNNNNNNGG	3 cut(s)	61, 279, 802
Bse118I	RCCGGY	1 cut(s)	104
Bse1I	ACTGG	4 cut(s)	236, 410, 663, 694
BseBI	CCWGG	2 cut(s)	110, 274
BseDI	CCNNGG	4 cut(s)	60, 211, 322, 623
BseGI	GGATG	1 cut(s)	829
BseLI	CCNNNNNNNGG	3 cut(s)	61, 279, 802
BseMII	CTCAG	3 cut(s)	440, 494, 588
BseNI	ACTGG	4 cut(s)	236, 410, 663, 694
BseRI	GAGGAG	5 cut(s)	62, 77, 304, 364, 573
BseXI	GCAGC	2 cut(s)	29, 79
Bsh1236I	CGCG	1 cut(s)	324
BshFI	GGCC	9 cut(s)	108, 113, 210, 272, 321, 345, 446, 694, 776
BsiHKAI	GWGCWC	3 cut(s)	153, 414, 741
BsiSI	CCGG	4 cut(s)	39, 105, 120, 346
BsiWI	CGTACG	1 cut(s)	204
BslFI	GGGAC	1 cut(s)	323
BslI	CCNNNNNNNGG	3 cut(s)	61, 279, 802
BsmAI	GTCTC	2 cut(s)	656, 801
BsmFI	GGGAC	1 cut(s)	323
BsnI	GGCC	9 cut(s)	108, 113, 210, 272, 321, 345, 446, 694, 776
Bsp1286I	GDGCHC	3 cut(s)	153, 414, 741
Bsp143I	GATC	5 cut(s)	141, 433, 476, 646, 826
BspACI	CCGC	9 cut(s)	216, 226, 265, 268, 279, 322, 324, 335, 392
BspANI	GGCC	9 cut(s)	108, 113, 210, 272, 321, 345, 446, 694, 776
BspCNI	CTCAG	3 cut(s)	439, 493, 589
BspFNI	CGCG	1 cut(s)	324
BspTI	CTTAAG	1 cut(s)	511
BsrBI	CCGCTC	2 cut(s)	265, 279
BsrFI	RCCGGY	1 cut(s)	104
BsrI	ACTGG	4 cut(s)	236, 410, 663, 694
BssAI	RCCGGY	1 cut(s)	104
BssECI	CCNNGG	4 cut(s)	60, 211, 322, 623
BssMI	GATC	5 cut(s)	141, 433, 476, 646, 826
BssNI	GRCGYC	2 cut(s)	20, 312
BssT1I	CCWWGG	1 cut(s)	623
Bst2UI	CCWGG	2 cut(s)	110, 274
Bst4CI	ACNGT	5 cut(s)	128, 247, 535, 544, 608
BstACI	GRCGYC	2 cut(s)	20, 312
BstAFI	CTTAAG	1 cut(s)	511
BstC8I	GCNNGC	4 cut(s)	106, 115, 196, 270
BstDEI	CTNAG	3 cut(s)	426, 480, 597
BstDSI	CCRYGG	2 cut(s)	211, 322
BstENI	CCTNNNNNAGG	1 cut(s)	800
BstF5I	GGATG	1 cut(s)	829
BstFNI	CGCG	1 cut(s)	324
BstH2I	RGCGCY	1 cut(s)	105
BstHHI	GCGC	1 cut(s)	104
BstKTI	GATC	5 cut(s)	144, 436, 479, 649, 829
BstMAI	GTCTC	2 cut(s)	656, 801
BstMBI	GATC	5 cut(s)	141, 433, 476, 646, 826
BstMWI	GCNNNNNNNGC	3 cut(s)	110, 114, 129
BstNI	CCWGG	2 cut(s)	110, 274
BstSCI	CCNGG	3 cut(s)	37, 108, 272
BstUI	CGCG	1 cut(s)	324
BstV1I	GCAGC	2 cut(s)	29, 79
BstX2I	RGATCY	1 cut(s)	476
BstYI	RGATCY	1 cut(s)	476
BsuRI	GGCC	9 cut(s)	108, 113, 210, 272, 321, 345, 446, 694, 776
BtgI	CCRYGG	2 cut(s)	211, 322
BtgZI	GCGATG	1 cut(s)	21
BtsCI	GGATG	1 cut(s)	829
BtsIMutI	CAGTG	3 cut(s)	229, 630, 656
Cac8I	GCNNGC	4 cut(s)	106, 115, 196, 270
CaiI	CAGNNNCTG	1 cut(s)	727
CfoI	GCGC	1 cut(s)	104
Cfr10I	RCCGGY	1 cut(s)	104
Cfr13I	GGNCC	4 cut(s)	270, 319, 343, 692
Cfr42I	CCGCGG	1 cut(s)	325
Csp6I	GTAC	5 cut(s)	160, 205, 235, 545, 579
CviAII	CATG	1 cut(s)	566
CviQI	GTAC	5 cut(s)	160, 205, 235, 545, 579
DdeI	CTNAG	3 cut(s)	426, 480, 597
DpnI	GATC	5 cut(s)	143, 435, 478, 648, 828
DpnII	GATC	5 cut(s)	141, 433, 476, 646, 826
EaeI	YGGCCR	3 cut(s)	106, 208, 774
EciI	GGCGGA	1 cut(s)	231
Ecl136II	GAGCTC	1 cut(s)	151
Eco130I	CCWWGG	1 cut(s)	623
Eco147I	AGGCCT	1 cut(s)	446
Eco24I	GRGCYC	1 cut(s)	153
Eco53kI	GAGCTC	1 cut(s)	151
Eco57I	CTGAAG	2 cut(s)	546, 687
EcoICRI	GAGCTC	1 cut(s)	151
EcoNI	CCTNNNNNAGG	1 cut(s)	800
EcoRI	GAATTC	2 cut(s)	376, 558
EcoRII	CCWGG	2 cut(s)	108, 272
EcoT14I	CCWWGG	1 cut(s)	623
EcoT38I	GRGCYC	1 cut(s)	153
ErhI	CCWWGG	1 cut(s)	623
FaeI	CATG	1 cut(s)	569
FaiI	YATR	8 cut(s)	135, 192, 360, 423, 567, 588, 800, 815
FaqI	GGGAC	1 cut(s)	323
FatI	CATG	1 cut(s)	565
FauI	CCCGC	2 cut(s)	261, 272
FbaI	TGATCA	2 cut(s)	141, 433
Fnu4HI	GCNGC	5 cut(s)	43, 68, 227, 266, 322
FokI	GGATG	1 cut(s)	836
FriOI	GRGCYC	1 cut(s)	153
Fsp4HI	GCNGC	5 cut(s)	43, 68, 227, 266, 322
FspBI	CTAG	2 cut(s)	492, 624
GlaI	GCGC	1 cut(s)	103
GluI	GCNGC	5 cut(s)	43, 68, 227, 266, 322
GsuI	CTGGAG	1 cut(s)	680
HaeII	RGCGCY	1 cut(s)	105
HaeIII	GGCC	9 cut(s)	108, 113, 210, 272, 321, 345, 446, 694, 776
HapII	CCGG	4 cut(s)	39, 105, 120, 346
HhaI	GCGC	1 cut(s)	104
Hin1I	GRCGYC	2 cut(s)	20, 312
Hin1II	CATG	1 cut(s)	569
Hin6I	GCGC	1 cut(s)	102
HinP1I	GCGC	1 cut(s)	102
HinfI	GANTC	2 cut(s)	48, 601
HpaII	CCGG	4 cut(s)	39, 105, 120, 346
HphI	GGTGA	2 cut(s)	406, 620
Hpy188I	TCNGA	4 cut(s)	61, 476, 502, 711
Hpy188III	TCNNGA	1 cut(s)	596
Hpy99I	CGWCG	3 cut(s)	22, 25, 317
HpyAV	CCTTC	3 cut(s)	253, 294, 325
HpyCH4III	ACNGT	5 cut(s)	128, 247, 535, 544, 608
HpyCH4IV	ACGT	4 cut(s)	20, 312, 438, 547
HpyF10VI	GCNNNNNNNGC	3 cut(s)	110, 114, 129
HpyF3I	CTNAG	3 cut(s)	426, 480, 597
HpySE526I	ACGT	4 cut(s)	20, 312, 438, 547
Hsp92I	GRCGYC	2 cut(s)	20, 312
Hsp92II	CATG	1 cut(s)	569
HspAI	GCGC	1 cut(s)	102
KroI	GCCGGC	1 cut(s)	104
KroNI	GCCGGC	1 cut(s)	106
Ksp22I	TGATCA	2 cut(s)	141, 433
KspI	CCGCGG	1 cut(s)	325
Kzo9I	GATC	5 cut(s)	141, 433, 476, 646, 826
LmnI	GCTCC	6 cut(s)	64, 75, 122, 148, 262, 276
Lsp1109I	GCAGC	2 cut(s)	29, 79
MaeI	CTAG	2 cut(s)	492, 624
MaeII	ACGT	4 cut(s)	20, 312, 438, 547
MaeIII	GTNAC	2 cut(s)	548, 608
MalI	GATC	5 cut(s)	143, 435, 478, 648, 828
MbiI	CCGCTC	2 cut(s)	265, 279
MboI	GATC	5 cut(s)	141, 433, 476, 646, 826
MboII	GAAGA	1 cut(s)	539
MflI	RGATCY	1 cut(s)	476
MhlI	GDGCHC	3 cut(s)	153, 414, 741
MlsI	TGGCCA	1 cut(s)	776
MluCI	AATT	2 cut(s)	376, 558
MluNI	TGGCCA	1 cut(s)	776
MmeI	TCCRAC	1 cut(s)	801
Mox20I	TGGCCA	1 cut(s)	776
MroNI	GCCGGC	1 cut(s)	104
MscI	TGGCCA	1 cut(s)	776
MseI	TTAA	1 cut(s)	512
Msp20I	TGGCCA	1 cut(s)	776
MspA1I	CMGCKG	1 cut(s)	324
MspCI	CTTAAG	1 cut(s)	511
MspI	CCGG	4 cut(s)	39, 105, 120, 346
MspR9I	CCNGG	3 cut(s)	39, 110, 274
MvaI	CCWGG	2 cut(s)	110, 274
MvnI	CGCG	1 cut(s)	324
MwoI	GCNNNNNNNGC	3 cut(s)	110, 114, 129
NaeI	GCCGGC	1 cut(s)	106
NciI	CCSGG	1 cut(s)	39
NdeII	GATC	5 cut(s)	141, 433, 476, 646, 826
NgoMIV	GCCGGC	1 cut(s)	104
NlaIII	CATG	1 cut(s)	569
NmeAIII	GCCGAG	1 cut(s)	488
NmuCI	GTSAC	2 cut(s)	548, 608
PceI	AGGCCT	1 cut(s)	446
PcsI	WCGNNNNNNNCGW	1 cut(s)	159
PdiI	GCCGGC	1 cut(s)	106
PfeI	GAWTC	2 cut(s)	48, 601
Pfl23II	CGTACG	1 cut(s)	204
PkrI	GCNGC	5 cut(s)	44, 69, 228, 267, 323
Psp124BI	GAGCTC	1 cut(s)	153
Psp6I	CCWGG	2 cut(s)	108, 272
PspGI	CCWGG	2 cut(s)	108, 272
PspLI	CGTACG	1 cut(s)	204
PspPI	GGNCC	4 cut(s)	270, 319, 343, 692
PstNI	CAGNNNCTG	1 cut(s)	727
PsuI	RGATCY	1 cut(s)	476
RsaI	GTAC	5 cut(s)	161, 206, 236, 546, 580
RsaNI	GTAC	5 cut(s)	160, 205, 235, 545, 579
SacI	GAGCTC	1 cut(s)	153
SacII	CCGCGG	1 cut(s)	325
SaqAI	TTAA	1 cut(s)	512
SatI	GCNGC	5 cut(s)	43, 68, 227, 266, 322
Sau3AI	GATC	5 cut(s)	141, 433, 476, 646, 826
Sau96I	GGNCC	4 cut(s)	270, 319, 343, 692
ScrFI	CCNGG	3 cut(s)	39, 110, 274
SduI	GDGCHC	3 cut(s)	153, 414, 741
Sfr303I	CCGCGG	1 cut(s)	325
SgrBI	CCGCGG	1 cut(s)	325
SmlI	CTYRAG	1 cut(s)	511
SmoI	CTYRAG	1 cut(s)	511
Sse9I	AATT	2 cut(s)	376, 558
SseBI	AGGCCT	1 cut(s)	446
SsiI	CCGC	9 cut(s)	216, 226, 265, 268, 279, 322, 324, 335, 392
SspMI	CTAG	2 cut(s)	492, 624
SstI	GAGCTC	1 cut(s)	153
StuI	AGGCCT	1 cut(s)	446
StyD4I	CCNGG	3 cut(s)	37, 108, 272
StyI	CCWWGG	1 cut(s)	623
TaaI	ACNGT	5 cut(s)	128, 247, 535, 544, 608
TaiI	ACGT	4 cut(s)	23, 315, 441, 550
TaqI	TCGA	3 cut(s)	153, 684, 834
TasI	AATT	2 cut(s)	376, 558
TatI	WGTACW	1 cut(s)	578
TauI	GCSGC	3 cut(s)	229, 268, 324
TfiI	GAWTC	2 cut(s)	48, 601
Tru1I	TTAA	1 cut(s)	512
Tru9I	TTAA	1 cut(s)	512
TscAI	CASTG	3 cut(s)	236, 637, 663
TseFI	GTSAC	2 cut(s)	548, 608
TseI	GCWGC	2 cut(s)	42, 67
Tsp45I	GTSAC	2 cut(s)	548, 608
TspDTI	ATGAA	1 cut(s)	732
TspGWI	ACGGA	1 cut(s)	235
TspRI	CASTG	3 cut(s)	236, 637, 663
Vha464I	CTTAAG	1 cut(s)	511
XagI	CCTNNNNNAGG	1 cut(s)	800
XapI	RAATTY	2 cut(s)	376, 558
XmaJI	CCTAGG	1 cut(s)	623
XspI	CTAG	2 cut(s)	492, 624
ZraI	GACGTC	2 cut(s)	21, 313

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.