Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0002495

Physical Location & Seq

Genomic Coordinates Reverse (-)

59485867 .. 59487408

Gene Structure 1542 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0463900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 801 bp

ATGAAGGATCGGATGTGCGAGCTCTGCAACCACCACGCCTCCCTCTACTGCGCCTCCGACTCCGCCTTCCTCTGCTTCCGCTGCGACTCTAGGGTTCACGGCGCCAACTTCCTCGTCGCTCGCCACGTCCGCCAGCCGCTCTGCTCCAATTGCAAAGCCCTCGCCGGAGACCCGATCTCCGGCGACGGCGTCCCCAATGCTCACTGGCTCTGCTCATCCTGCTCGCCGGAGTATTTCTCCGGAGACGACGAGGATTCGTTTTCGTCGTCGTCGTGCTCGGCATGCGTCTCCAGCACCGAATCATTGACCGGGACGACGGCGACGACGACAACAAAGGTTTGTCTGCAGAGATCGGGGAGCTCTGTAACGGGTGTTTCCGGCAAGTATTCGCACGTTCCGGCGAGATTCTCCTGTAGGTTTACGAAGAGGAGGGTGCAGAGAGCGCGAGCTGCGTCGACGAGTGCGGACGCCAGAGCGGAGGGTACTTTCGTAAATTGGTGCAAGAGGCTGGGGATGAGTGGTGATTCGGCGGTGGTGGTGTCGTCGGCTTTGCATGCTTTGGGCTTTTGTTTGGGCCGGCTGCCGGGCGTGCCGTTGAGAGTGTCGCTCGCGGCGTCGTTCTGGTTCGGGGTGAGACTCTGCGGGAACCGAGGGGTGTCGAGGTGTCAGAATCTGAGAAGGGTGGAGGAGATATCGGGAGTGCCGGCGAAGCTGATCCTGGCCGTTGATGCGAAGCTCGGACGAGAACTGAGAGTGAGGAGAGCGAGGCCTGAGCTAGAGGAGGGCTGGGCGGAGTGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0008152 GO:0009314 GO:0009416 GO:0009628 GO:0009648 GO:0009791 GO:0009909 GO:0009911 GO:0009987 GO:0010228 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0022414 GO:0023052 GO:0032501 GO:0032502 GO:0035556 GO:0036211 GO:0042802 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0046777 GO:0048518 GO:0048573 GO:0048580 GO:0048582 GO:0048608 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051094 GO:0051239 GO:0051240 GO:0051716 GO:0061458 GO:0065007 GO:0071704 GO:0140096 GO:1901564 GO:2000026 GO:2000241 GO:2000243

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

OSR1_C Pkinase

Protein Analysis

266

Amino Acids

28.67

Weight (kDa)

9.0

Isoelectric Point (pI)

54.52

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002495)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G64630 AT5G41990
fragaria_vesca	FvH4_5g11251 FvH4_5g11251 FvH4_6g41800 FvH4_6g41920 FvH4_6g42720
malus_domestica	MD06G1114800.v1.1 MD06G1115000.v1.1 MD13G1200200.v1.1 MD14G1136200.v1.1
prunus_persica	Prupe.5G127500_v2.0.a1 Prupe.5G127500_v2.0.a1
pyrus_communis	pycom06g10760 pycom13g17380 pycom13g17390 pycom14g10980
rosa_chinensis	RchiOBHm_Chr2g0157811 RchiOBHm_Chr7g0186611
rosa_laevigata	RLG00000004829 RLG00000021022
rosa_multiflora	Rmu_co8298477.1_g000001 Rmu_sc0000645.1_g000017 Rmu_sc0007722.1_g000019
rosa_roxburghii	Rroxscaffold_2G00091930 Rroxscaffold_3G00268010
rosa_rugosa	Rorug02G0463900 Rorug06G0475200 Rorug06G0475300 Rorug06G0475400
rosa_samantha	Rh2AG529200 Rh2BG543300 Rh2CG513500 Rh2DG552100 Rh7AG065500 Rh7BG081400 Rh7CG082300 Rh7DG083300
rosa_wichuraiana	Rw2G043750 Rw7G006920 Rw7G007140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	101
AccBSI	CCGCTC	2 cut(s)	139, 476
AccI	GTMKAC	1 cut(s)	455
AccII	CGCG	2 cut(s)	445, 611
AccIII	TCCGGA	1 cut(s)	239
AclWI	GGATC	2 cut(s)	15, 709
AcoI	YGGCCR	1 cut(s)	720
AcyI	GRCGYC	4 cut(s)	102, 189, 468, 614
AfaI	GTAC	1 cut(s)	484
AfiI	CCNNNNNNNGG	2 cut(s)	179, 583
AjiI	CACGTC	1 cut(s)	127
AjnI	CCWGG	1 cut(s)	717
AluBI	AGCT	6 cut(s)	22, 360, 449, 712, 736, 775
AluI	AGCT	6 cut(s)	22, 360, 449, 712, 736, 775
Alw21I	GWGCWC	3 cut(s)	24, 278, 362
Alw26I	GTCTC	4 cut(s)	162, 237, 292, 628
AlwI	GGATC	2 cut(s)	15, 709
AlwNI	CAGNNNCTG	1 cut(s)	673
Aor13HI	TCCGGA	1 cut(s)	239
AoxI	GGCC	3 cut(s)	574, 720, 767
ApeKI	GCWGC	3 cut(s)	81, 449, 580
AspLEI	GCGC	3 cut(s)	53, 104, 445
AspS9I	GGNCC	1 cut(s)	574
AsuC2I	CCSGG	2 cut(s)	310, 585
AsuHPI	GGTGA	2 cut(s)	533, 643
BaeI	ACNNNNGTAYC	2 cut(s)	474, 507
BanI	GGYRCC	1 cut(s)	101
BanII	GRGCYC	2 cut(s)	24, 362
Bbv12I	GWGCWC	3 cut(s)	24, 278, 362
BbvI	GCAGC	3 cut(s)	68, 436, 567
BceAI	ACGGC	5 cut(s)	115, 202, 333, 577, 707
BcgI	CGANNNNNNTGC	2 cut(s)	142, 176
BciT130I	CCWGG	1 cut(s)	719
BcnI	CCSGG	2 cut(s)	310, 585
BcoDI	GTCTC	4 cut(s)	162, 237, 292, 628
BfaI	CTAG	2 cut(s)	90, 776
BfmI	CTRYAG	2 cut(s)	344, 412
BfoI	RGCGCY	1 cut(s)	105
BisI	GCNGC	5 cut(s)	82, 137, 450, 581, 612
BlsI	GCNGC	5 cut(s)	83, 138, 451, 582, 613
Bme1390I	CCNGG	3 cut(s)	310, 585, 719
BmgBI	CACGTC	1 cut(s)	127
BmgT120I	GGNCC	1 cut(s)	574
BmiI	GGNNCC	2 cut(s)	103, 647
BmrFI	CCNGG	3 cut(s)	310, 585, 719
BmsI	GCATC	1 cut(s)	718
BplI	GAGNNNNNCTC	4 cut(s)	221, 253, 591, 623
BpmI	CTGGAG	1 cut(s)	274
Bpu10I	CCTNAGC	1 cut(s)	771
BpuMI	CCSGG	2 cut(s)	310, 585
BsaHI	GRCGYC	4 cut(s)	102, 189, 468, 614
BsaI	GGTCTC	1 cut(s)	162
BsaJI	CCNNGG	1 cut(s)	649
BsaWI	WCCGGW	1 cut(s)	239
BsaXI	ACNNNNNCTCC	6 cut(s)	23, 38, 53, 68, 161, 191
Bsc4I	CCNNNNNNNGG	2 cut(s)	179, 583
Bse118I	RCCGGY	2 cut(s)	576, 703
Bse1I	ACTGG	1 cut(s)	209
BseAI	TCCGGA	1 cut(s)	239
BseBI	CCWGG	1 cut(s)	719
BseDI	CCNNGG	1 cut(s)	649
BseGI	GGATG	3 cut(s)	18, 215, 519
BseLI	CCNNNNNNNGG	2 cut(s)	179, 583
BseMII	CTCAG	3 cut(s)	665, 740, 762
BseNI	ACTGG	1 cut(s)	209
BseRI	GAGGAG	4 cut(s)	442, 701, 772, 794
BseXI	GCAGC	3 cut(s)	68, 436, 567
BseYI	CCCAGC	2 cut(s)	508, 786
BsgI	GTGCAG	1 cut(s)	455
Bsh1236I	CGCG	2 cut(s)	445, 611
BshFI	GGCC	3 cut(s)	576, 722, 769
BshNI	GGYRCC	1 cut(s)	101
BsiHKAI	GWGCWC	3 cut(s)	24, 278, 362
BslFI	GGGAC	2 cut(s)	176, 325
BslI	CCNNNNNNNGG	2 cut(s)	179, 583
BsmAI	GTCTC	4 cut(s)	162, 237, 292, 628
BsmBI	CGTCTC	2 cut(s)	237, 292
BsmFI	GGGAC	2 cut(s)	176, 325
BsnI	GGCC	3 cut(s)	576, 722, 769
Bso31I	GGTCTC	1 cut(s)	162
Bsp1286I	GDGCHC	3 cut(s)	24, 278, 362
Bsp13I	TCCGGA	1 cut(s)	239
Bsp143I	GATC	4 cut(s)	7, 174, 350, 714
BspANI	GGCC	3 cut(s)	576, 722, 769
BspCNI	CTCAG	3 cut(s)	666, 741, 763
BspEI	TCCGGA	1 cut(s)	239
BspFNI	CGCG	2 cut(s)	445, 611
BspLI	GGNNCC	2 cut(s)	103, 647
BspMAI	CTGCAG	1 cut(s)	348
BspPI	GGATC	2 cut(s)	15, 709
BspT107I	GGYRCC	1 cut(s)	101
BspTNI	GGTCTC	1 cut(s)	162
BsrBI	CCGCTC	2 cut(s)	139, 476
BsrFI	RCCGGY	2 cut(s)	576, 703
BsrI	ACTGG	1 cut(s)	209
BssAI	RCCGGY	2 cut(s)	576, 703
BssECI	CCNNGG	1 cut(s)	649
BssMI	GATC	4 cut(s)	7, 174, 350, 714
BssNI	GRCGYC	4 cut(s)	102, 189, 468, 614
Bst2UI	CCWGG	1 cut(s)	719
Bst6I	CTCTTC	1 cut(s)	419
BstACI	GRCGYC	4 cut(s)	102, 189, 468, 614
BstDEI	CTNAG	3 cut(s)	674, 749, 771
BstF5I	GGATG	3 cut(s)	18, 215, 519
BstFNI	CGCG	2 cut(s)	445, 611
BstH2I	RGCGCY	1 cut(s)	105
BstHHI	GCGC	3 cut(s)	53, 104, 445
BstKTI	GATC	4 cut(s)	10, 177, 353, 717
BstMAI	GTCTC	4 cut(s)	162, 237, 292, 628
BstMBI	GATC	4 cut(s)	7, 174, 350, 714
BstNI	CCWGG	1 cut(s)	719
BstNSI	RCATGY	2 cut(s)	285, 557
BstSCI	CCNGG	3 cut(s)	308, 583, 717
BstSFI	CTRYAG	2 cut(s)	344, 412
BstUI	CGCG	2 cut(s)	445, 611
BstV1I	GCAGC	3 cut(s)	68, 436, 567
BsuRI	GGCC	3 cut(s)	576, 722, 769
BtrI	CACGTC	1 cut(s)	127
BtsCI	GGATG	3 cut(s)	18, 215, 519
BtsIMutI	CAGTG	1 cut(s)	202
CaiI	CAGNNNCTG	1 cut(s)	673
CfoI	GCGC	3 cut(s)	53, 104, 445
Cfr10I	RCCGGY	2 cut(s)	576, 703
Cfr13I	GGNCC	1 cut(s)	574
CseI	GACGC	5 cut(s)	178, 274, 441, 476, 603
Csp6I	GTAC	1 cut(s)	483
CviAII	CATG	2 cut(s)	282, 554
CviQI	GTAC	1 cut(s)	483
DdeI	CTNAG	3 cut(s)	674, 749, 771
DinI	GGCGCC	1 cut(s)	103
DpnI	GATC	4 cut(s)	9, 176, 352, 716
DpnII	GATC	4 cut(s)	7, 174, 350, 714
EaeI	YGGCCR	1 cut(s)	720
Eam1104I	CTCTTC	1 cut(s)	419
EarI	CTCTTC	1 cut(s)	419
EciI	GGCGGA	2 cut(s)	52, 119
Ecl136II	GAGCTC	2 cut(s)	22, 360
Eco147I	AGGCCT	1 cut(s)	769
Eco24I	GRGCYC	2 cut(s)	24, 362
Eco31I	GGTCTC	1 cut(s)	162
Eco32I	GATATC	1 cut(s)	693
Eco53kI	GAGCTC	2 cut(s)	22, 360
EcoICRI	GAGCTC	2 cut(s)	22, 360
EcoRII	CCWGG	1 cut(s)	717
EcoRV	GATATC	1 cut(s)	693
EcoT38I	GRGCYC	2 cut(s)	24, 362
EgeI	GGCGCC	1 cut(s)	103
EheI	GGCGCC	1 cut(s)	103
Esp3I	CGTCTC	2 cut(s)	237, 292
FaeI	CATG	2 cut(s)	285, 557
FaiI	YATR	2 cut(s)	283, 555
FaqI	GGGAC	2 cut(s)	176, 325
FatI	CATG	2 cut(s)	281, 553
FauI	CCCGC	1 cut(s)	635
FblI	GTMKAC	1 cut(s)	455
Fnu4HI	GCNGC	5 cut(s)	82, 137, 450, 581, 612
FokI	GGATG	3 cut(s)	25, 202, 526
FriOI	GRGCYC	2 cut(s)	24, 362
Fsp4HI	GCNGC	5 cut(s)	82, 137, 450, 581, 612
FspBI	CTAG	2 cut(s)	90, 776
GlaI	GCGC	3 cut(s)	52, 103, 444
GluI	GCNGC	5 cut(s)	82, 137, 450, 581, 612
GsaI	CCCAGC	2 cut(s)	512, 790
GsuI	CTGGAG	1 cut(s)	274
HaeII	RGCGCY	1 cut(s)	105
HaeIII	GGCC	3 cut(s)	576, 722, 769
HgaI	GACGC	5 cut(s)	178, 274, 441, 476, 603
HhaI	GCGC	3 cut(s)	53, 104, 445
Hin1I	GRCGYC	4 cut(s)	102, 189, 468, 614
Hin1II	CATG	2 cut(s)	285, 557
Hin6I	GCGC	3 cut(s)	51, 102, 443
HinP1I	GCGC	3 cut(s)	51, 102, 443
HincII	GTYRAC	1 cut(s)	456
HindII	GTYRAC	1 cut(s)	456
HinfI	GANTC	8 cut(s)	59, 86, 254, 299, 405, 524, 636, 670
HphI	GGTGA	2 cut(s)	533, 643
Hpy166II	GTNNAC	3 cut(s)	97, 420, 456
Hpy188I	TCNGA	5 cut(s)	12, 58, 669, 675, 740
Hpy188III	TCNNGA	2 cut(s)	240, 696
Hpy8I	GTNNAC	3 cut(s)	97, 420, 456
HpyAV	CCTTC	2 cut(s)	76, 672
HpyCH4IV	ACGT	2 cut(s)	126, 393
HpyCH4V	TGCA	6 cut(s)	27, 153, 346, 436, 501, 553
HpyF3I	CTNAG	3 cut(s)	674, 749, 771
HpySE526I	ACGT	2 cut(s)	126, 393
Hsp92I	GRCGYC	4 cut(s)	102, 189, 468, 614
Hsp92II	CATG	2 cut(s)	285, 557
HspAI	GCGC	3 cut(s)	51, 102, 443
KasI	GGCGCC	1 cut(s)	101
Kpn2I	TCCGGA	1 cut(s)	239
KroI	GCCGGC	2 cut(s)	576, 703
KroNI	GCCGGC	2 cut(s)	578, 705
Kzo9I	GATC	4 cut(s)	7, 174, 350, 714
LmnI	GCTCC	2 cut(s)	149, 357
Lsp1109I	GCAGC	3 cut(s)	68, 436, 567
LweI	GCATC	1 cut(s)	718
MaeI	CTAG	2 cut(s)	90, 776
MaeII	ACGT	2 cut(s)	126, 393
MaeIII	GTNAC	1 cut(s)	364
MalI	GATC	4 cut(s)	9, 176, 352, 716
MbiI	CCGCTC	2 cut(s)	139, 476
MboI	GATC	4 cut(s)	7, 174, 350, 714
MboII	GAAGA	1 cut(s)	436
MfeI	CAATTG	1 cut(s)	148
MhlI	GDGCHC	3 cut(s)	24, 278, 362
MluCI	AATT	2 cut(s)	148, 493
Mly113I	GGCGCC	1 cut(s)	102
MlyI	GAGTC	3 cut(s)	53, 80, 630
MmeI	TCCRAC	1 cut(s)	81
MroI	TCCGGA	1 cut(s)	239
MroNI	GCCGGC	2 cut(s)	576, 703
MspA1I	CMGCKG	1 cut(s)	81
MspR9I	CCNGG	3 cut(s)	310, 585, 719
MunI	CAATTG	1 cut(s)	148
MvaI	CCWGG	1 cut(s)	719
MvnI	CGCG	2 cut(s)	445, 611
NaeI	GCCGGC	2 cut(s)	578, 705
NarI	GGCGCC	1 cut(s)	102
NciI	CCSGG	2 cut(s)	310, 585
NdeII	GATC	4 cut(s)	7, 174, 350, 714
NgoMIV	GCCGGC	2 cut(s)	576, 703
NlaIII	CATG	2 cut(s)	285, 557
NlaIV	GGNNCC	2 cut(s)	103, 647
NmeAIII	GCCGAG	1 cut(s)	257
NspI	RCATGY	2 cut(s)	285, 557
PaeI	GCATGC	2 cut(s)	285, 557
PceI	AGGCCT	1 cut(s)	769
PcsI	WCGNNNNNNNCGW	6 cut(s)	123, 263, 269, 320, 323, 611
PdiI	GCCGGC	2 cut(s)	578, 705
PfeI	GAWTC	5 cut(s)	254, 299, 405, 524, 670
PflFI	GACNNNGTC	1 cut(s)	188
PkrI	GCNGC	5 cut(s)	83, 138, 451, 582, 613
PleI	GAGTC	3 cut(s)	53, 80, 630
PluTI	GGCGCC	1 cut(s)	105
PpsI	GAGTC	3 cut(s)	53, 80, 630
Psp124BI	GAGCTC	2 cut(s)	24, 362
Psp6I	CCWGG	1 cut(s)	717
PspFI	CCCAGC	2 cut(s)	508, 786
PspGI	CCWGG	1 cut(s)	717
PspN4I	GGNNCC	2 cut(s)	103, 647
PspPI	GGNCC	1 cut(s)	574
PstI	CTGCAG	1 cut(s)	348
PstNI	CAGNNNCTG	1 cut(s)	673
PsyI	GACNNNGTC	1 cut(s)	188
RsaI	GTAC	1 cut(s)	484
RsaNI	GTAC	1 cut(s)	483
SacI	GAGCTC	2 cut(s)	24, 362
SalI	GTCGAC	1 cut(s)	454
SatI	GCNGC	5 cut(s)	82, 137, 450, 581, 612
Sau3AI	GATC	4 cut(s)	7, 174, 350, 714
Sau96I	GGNCC	1 cut(s)	574
SchI	GAGTC	3 cut(s)	53, 80, 630
ScrFI	CCNGG	3 cut(s)	310, 585, 719
SduI	GDGCHC	3 cut(s)	24, 278, 362
SfaNI	GCATC	1 cut(s)	718
SfcI	CTRYAG	2 cut(s)	344, 412
SfoI	GGCGCC	1 cut(s)	103
SgrDI	CGTCGACG	1 cut(s)	454
SphI	GCATGC	2 cut(s)	285, 557
Sse9I	AATT	2 cut(s)	148, 493
SseBI	AGGCCT	1 cut(s)	769
SspDI	GGCGCC	1 cut(s)	101
SspMI	CTAG	2 cut(s)	90, 776
SstI	GAGCTC	2 cut(s)	24, 362
StuI	AGGCCT	1 cut(s)	769
StyD4I	CCNGG	3 cut(s)	308, 583, 717
TaiI	ACGT	2 cut(s)	129, 396
TaqI	TCGA	2 cut(s)	455, 659
TasI	AATT	2 cut(s)	148, 493
TauI	GCSGC	2 cut(s)	139, 614
TfiI	GAWTC	5 cut(s)	254, 299, 405, 524, 670
TscAI	CASTG	1 cut(s)	209
TseI	GCWGC	3 cut(s)	81, 449, 580
TspDTI	ATGAA	1 cut(s)	17
TspRI	CASTG	1 cut(s)	209
Tth111I	GACNNNGTC	1 cut(s)	188
XceI	RCATGY	2 cut(s)	285, 557
XmiI	GTMKAC	1 cut(s)	455
XspI	CTAG	2 cut(s)	90, 776

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.