Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0002495

Physical Location & Seq

Genomic Coordinates Forward (+)

13153292 .. 13154630

Gene Structure 1339 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom13g17390.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1068 bp

ATGACCATCAACATGATAACAGAGTTATTCACTTCCGGGAGCTTGAGGCAGTACCGAAATAAGCATAAGAATGTCGATATGAAAGCCATCAAGAATTGGGCTAGACAGATTCTTCGAGGTCTGGACTATCTGCATTCTCATAATCCTCCAATTATCCATAGAGATTTGAAGTGTGACAACCTATTTGTCAATGGATTTAATGGAGAACTGAAAATCGGAGATCTCGGATTGGCGATTGTCATGCAGCAGCCTACTGCTCATAGCATAATTGGCACCCCTGAATTCATGGCTCCAGAGCTTTATGACGAGGATTACAATGAATTAGTCGACATCTATTCTTTTGGCATGTGCATGCTAGAGATGGTGACTTGTGAATACCCTTATAGTGAATGTAAAAATCTGGCGCAAATTTATAAAAAGGTTACCTCTGGTGTAAAGCCTGCTTCCCTCAGTAAAGTAGACAATCCTCAAATCAAGCAGTTCATAGAGAAGTGTCTAGTTACAGCTTCTATGAGATTGTCTGCGGCAGAACTCTTGAAAGATCCAATCCTTGCAACTGACAACTTGAATGAGTCCAGCTGTGATCTTTCACAACTACAAAAGTTGTTTAACTTGCCAGAGCCCGCATCTAACTCGTCAGTGCTGGAGTTACATGGTTTCTCTAAGAATAATGAGTTCAGGTTAAGAGCGGGGAAAAATCCCGATAACACAGTGTCTTTAACTTTGCGCATTGCTGATACATGTGGTCTTGTGAGGAATATCAGGTTTGAGTTCTATCTCGATTCTGATACCGTGATTTCAATTGCTTGGGAGATGGTTGAGCAACTTGATCTTTCACATGAAGATGTATCTGTCGTAGCTGAGCTAATTGATAACTCGATTGTGAAGCTTGTACCCGGATGGAAACCTTCATCGGAGTTGTCTCTAGCGGACAAAGATAGGTATGATGCGCTAAAGAGGGAGCTTGATGCTATTGGTAAGCAGTATTTCTCGAAATTAAGGGAAGAGGAAATGCAGAGTGCAAAGAAGAGTTGGATAGCAGAAAACAAAATAGCTGTAGTTGGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0008152 GO:0009314 GO:0009416 GO:0009628 GO:0009648 GO:0009791 GO:0009909 GO:0009911 GO:0009987 GO:0010228 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0022414 GO:0023052 GO:0032501 GO:0032502 GO:0035556 GO:0036211 GO:0042802 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0046777 GO:0048518 GO:0048573 GO:0048580 GO:0048582 GO:0048608 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051094 GO:0051239 GO:0051240 GO:0051716 GO:0061458 GO:0065007 GO:0071704 GO:0140096 GO:1901564 GO:2000026 GO:2000241 GO:2000243

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

OSR1_C Pkinase

Protein Analysis

356

Amino Acids

40.16

Weight (kDa)

5.41

Isoelectric Point (pI)

35.05

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	3 - 182	2e-37	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	3 - 176	1.4e-25	Protein tyrosine and serine/threonine kinase
OSR1_C	PF12202	240 - 294	2.9e-06	Oxidative-stress-responsive kinase 1 C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002495)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G64630 AT5G41990
fragaria_vesca	FvH4_5g11251 FvH4_5g11251 FvH4_6g41800 FvH4_6g41920 FvH4_6g42720
malus_domestica	MD06G1114800.v1.1 MD06G1115000.v1.1 MD13G1200200.v1.1 MD14G1136200.v1.1
prunus_persica	Prupe.5G127500_v2.0.a1 Prupe.5G127500_v2.0.a1
pyrus_communis	pycom06g10760 pycom13g17380 pycom13g17390 pycom14g10980
rosa_chinensis	RchiOBHm_Chr2g0157811 RchiOBHm_Chr7g0186611
rosa_laevigata	RLG00000004829 RLG00000021022
rosa_multiflora	Rmu_co8298477.1_g000001 Rmu_sc0000645.1_g000017 Rmu_sc0007722.1_g000019
rosa_roxburghii	Rroxscaffold_2G00091930 Rroxscaffold_3G00268010
rosa_rugosa	Rorug02G0463900 Rorug06G0475200 Rorug06G0475300 Rorug06G0475400
rosa_samantha	Rh2AG529200 Rh2BG543300 Rh2CG513500 Rh2DG552100 Rh7AG065500 Rh7BG081400 Rh7CG082300 Rh7DG083300
rosa_wichuraiana	Rw2G043750 Rw7G006920 Rw7G007140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	414
Acc16I	TGCGCA	1 cut(s)	728
AccB1I	GGYRCC	1 cut(s)	272
AccBSI	CCGCTC	1 cut(s)	689
AccI	GTMKAC	2 cut(s)	327, 459
AciI	CCGC	4 cut(s)	524, 624, 689, 929
AclWI	GGATC	1 cut(s)	536
AcsI	RAATTY	2 cut(s)	281, 408
AfaI	GTAC	2 cut(s)	53, 894
AflIII	ACRYGT	1 cut(s)	740
AgsI	TTSAA	4 cut(s)	169, 538, 568, 801
AluBI	AGCT	9 cut(s)	42, 298, 506, 579, 860, 865, 889, 964, 1055
AluI	AGCT	9 cut(s)	42, 298, 506, 579, 860, 865, 889, 964, 1055
Alw26I	GTCTC	1 cut(s)	927
AlwI	GGATC	1 cut(s)	536
ApeKI	GCWGC	2 cut(s)	244, 247
ApoI	RAATTY	2 cut(s)	281, 408
ArsI	GACNNNNNNTTYG	4 cut(s)	96, 128, 167, 199
AspLEI	GCGC	3 cut(s)	406, 729, 952
AsuC2I	CCSGG	2 cut(s)	37, 897
AsuHPI	GGTGA	1 cut(s)	376
BanI	GGYRCC	1 cut(s)	272
BanII	GRGCYC	1 cut(s)	624
BbvI	GCAGC	2 cut(s)	256, 259
BccI	CCATC	5 cut(s)	14, 95, 355, 808, 894
BcgI	CGANNNNNNTGC	4 cut(s)	223, 257, 615, 649
BcnI	CCSGG	2 cut(s)	37, 897
BcoDI	GTCTC	1 cut(s)	927
BfaI	CTAG	4 cut(s)	102, 356, 497, 926
BfmI	CTRYAG	1 cut(s)	1056
BglII	AGATCT	1 cut(s)	220
BisI	GCNGC	3 cut(s)	245, 248, 525
BlpI	GCTNAGC	1 cut(s)	861
BlsI	GCNGC	3 cut(s)	246, 249, 526
Bme1390I	CCNGG	2 cut(s)	37, 897
BmiI	GGNNCC	2 cut(s)	274, 291
BmrFI	CCNGG	2 cut(s)	37, 897
BmsI	GCATC	3 cut(s)	635, 937, 958
BpmI	CTGGAG	2 cut(s)	276, 665
Bpu1102I	GCTNAGC	1 cut(s)	861
BpuEI	CTTGAG	1 cut(s)	64
BpuMI	CCSGG	2 cut(s)	37, 897
Bse3DI	GCAATG	1 cut(s)	729
BseGI	GGATG	1 cut(s)	905
BseMI	GCAATG	1 cut(s)	729
BseMII	CTCAG	2 cut(s)	463, 852
BseXI	GCAGC	2 cut(s)	256, 259
BshNI	GGYRCC	1 cut(s)	272
BsiSI	CCGG	2 cut(s)	36, 897
BsmAI	GTCTC	1 cut(s)	927
BsmI	GAATGC	1 cut(s)	133
Bsp1286I	GDGCHC	1 cut(s)	624
Bsp143I	GATC	4 cut(s)	220, 541, 583, 829
Bsp1720I	GCTNAGC	1 cut(s)	861
BspACI	CCGC	4 cut(s)	524, 624, 689, 929
BspCNI	CTCAG	2 cut(s)	462, 853
BspLI	GGNNCC	2 cut(s)	274, 291
BspPI	GGATC	1 cut(s)	536
BspT107I	GGYRCC	1 cut(s)	272
BsrBI	CCGCTC	1 cut(s)	689
BsrDI	GCAATG	1 cut(s)	729
BssMI	GATC	4 cut(s)	220, 541, 583, 829
Bst4CI	ACNGT	2 cut(s)	712, 793
Bst6I	CTCTTC	2 cut(s)	999, 1022
BstC8I	GCNNGC	3 cut(s)	353, 441, 624
BstDEI	CTNAG	3 cut(s)	449, 663, 861
BstEII	GGTNACC	1 cut(s)	421
BstF5I	GGATG	1 cut(s)	905
BstHHI	GCGC	3 cut(s)	406, 729, 952
BstKTI	GATC	4 cut(s)	223, 544, 586, 832
BstMAI	GTCTC	1 cut(s)	927
BstMBI	GATC	4 cut(s)	220, 541, 583, 829
BstMWI	GCNNNNNNNGC	1 cut(s)	270
BstNSI	RCATGY	3 cut(s)	349, 355, 744
BstPI	GGTNACC	1 cut(s)	421
BstSCI	CCNGG	2 cut(s)	35, 895
BstSFI	CTRYAG	1 cut(s)	1056
BstV1I	GCAGC	2 cut(s)	256, 259
BstX2I	RGATCY	2 cut(s)	220, 541
BstYI	RGATCY	2 cut(s)	220, 541
BtsCI	GGATG	1 cut(s)	905
BtsIMutI	CAGTG	2 cut(s)	645, 717
Cac8I	GCNNGC	3 cut(s)	353, 441, 624
CfoI	GCGC	3 cut(s)	406, 729, 952
Csp6I	GTAC	2 cut(s)	52, 893
CviAII	CATG	8 cut(s)	13, 241, 286, 346, 352, 653, 741, 839
CviQI	GTAC	2 cut(s)	52, 893
DdeI	CTNAG	3 cut(s)	449, 663, 861
DpnI	GATC	4 cut(s)	222, 543, 585, 831
DpnII	GATC	4 cut(s)	220, 541, 583, 829
Eam1104I	CTCTTC	2 cut(s)	999, 1022
EarI	CTCTTC	2 cut(s)	999, 1022
Eco24I	GRGCYC	1 cut(s)	624
Eco91I	GGTNACC	1 cut(s)	421
EcoO65I	GGTNACC	1 cut(s)	421
EcoRI	GAATTC	1 cut(s)	281
EcoT38I	GRGCYC	1 cut(s)	624
FaeI	CATG	8 cut(s)	16, 244, 289, 349, 355, 656, 744, 842
FatI	CATG	8 cut(s)	12, 240, 285, 345, 351, 652, 740, 838
FauI	CCCGC	2 cut(s)	631, 682
FblI	GTMKAC	2 cut(s)	327, 459
Fnu4HI	GCNGC	3 cut(s)	245, 248, 525
FokI	GGATG	1 cut(s)	912
FriOI	GRGCYC	1 cut(s)	624
Fsp4HI	GCNGC	3 cut(s)	245, 248, 525
FspBI	CTAG	4 cut(s)	102, 356, 497, 926
FspI	TGCGCA	1 cut(s)	728
GlaI	GCGC	3 cut(s)	405, 728, 951
GluI	GCNGC	3 cut(s)	245, 248, 525
GsuI	CTGGAG	2 cut(s)	276, 665
HapII	CCGG	2 cut(s)	36, 897
HhaI	GCGC	3 cut(s)	406, 729, 952
Hin1II	CATG	8 cut(s)	16, 244, 289, 349, 355, 656, 744, 842
Hin6I	GCGC	3 cut(s)	404, 727, 950
HinP1I	GCGC	3 cut(s)	404, 727, 950
HincII	GTYRAC	1 cut(s)	328
HindII	GTYRAC	1 cut(s)	328
HindIII	AAGCTT	1 cut(s)	887
HinfI	GANTC	3 cut(s)	109, 572, 782
HpaII	CCGG	2 cut(s)	36, 897
HphI	GGTGA	1 cut(s)	376
Hpy166II	GTNNAC	2 cut(s)	328, 460
Hpy188I	TCNGA	4 cut(s)	218, 227, 787, 916
Hpy188III	TCNNGA	7 cut(s)	91, 122, 293, 535, 701, 779, 991
Hpy8I	GTNNAC	2 cut(s)	328, 460
HpyAV	CCTTC	1 cut(s)	918
HpyCH4III	ACNGT	2 cut(s)	712, 793
HpyCH4V	TGCA	6 cut(s)	133, 244, 351, 554, 1015, 1022
HpyF10VI	GCNNNNNNNGC	1 cut(s)	270
HpyF3I	CTNAG	3 cut(s)	449, 663, 861
Hsp92II	CATG	8 cut(s)	16, 244, 289, 349, 355, 656, 744, 842
HspAI	GCGC	3 cut(s)	404, 727, 950
Kzo9I	GATC	4 cut(s)	220, 541, 583, 829
LmnI	GCTCC	3 cut(s)	39, 295, 961
Lsp1109I	GCAGC	2 cut(s)	256, 259
LweI	GCATC	3 cut(s)	635, 937, 958
MaeI	CTAG	4 cut(s)	102, 356, 497, 926
MaeIII	GTNAC	5 cut(s)	173, 364, 421, 499, 648
MalI	GATC	4 cut(s)	222, 543, 585, 831
MbiI	CCGCTC	1 cut(s)	689
MboI	GATC	4 cut(s)	220, 541, 583, 829
MboII	GAAGA	4 cut(s)	104, 854, 1016, 1039
MfeI	CAATTG	1 cut(s)	801
MflI	RGATCY	2 cut(s)	220, 541
MhlI	GDGCHC	1 cut(s)	624
MluCI	AATT	9 cut(s)	94, 150, 267, 281, 320, 408, 801, 867, 995
MlyI	GAGTC	1 cut(s)	581
MmeI	TCCRAC	1 cut(s)	1013
MseI	TTAA	5 cut(s)	198, 609, 683, 719, 998
MslI	CAYNNNNRTG	4 cut(s)	11, 69, 350, 843
MspA1I	CMGCKG	1 cut(s)	579
MspI	CCGG	2 cut(s)	36, 897
MspR9I	CCNGG	2 cut(s)	37, 897
MunI	CAATTG	1 cut(s)	801
Mva1269I	GAATGC	1 cut(s)	133
MwoI	GCNNNNNNNGC	1 cut(s)	270
NciI	CCSGG	2 cut(s)	37, 897
NdeII	GATC	4 cut(s)	220, 541, 583, 829
NlaIII	CATG	8 cut(s)	16, 244, 289, 349, 355, 656, 744, 842
NlaIV	GGNNCC	2 cut(s)	274, 291
NmuCI	GTSAC	2 cut(s)	173, 364
NsbI	TGCGCA	1 cut(s)	728
NspI	RCATGY	3 cut(s)	349, 355, 744
PaeI	GCATGC	1 cut(s)	355
PciI	ACATGT	1 cut(s)	740
PctI	GAATGC	1 cut(s)	133
PfeI	GAWTC	2 cut(s)	109, 782
PfoI	TCCNGGA	1 cut(s)	35
PkrI	GCNGC	3 cut(s)	246, 249, 526
PleI	GAGTC	1 cut(s)	580
PpsI	GAGTC	1 cut(s)	580
PscI	ACATGT	1 cut(s)	740
PsiI	TTATAA	1 cut(s)	414
PspEI	GGTNACC	1 cut(s)	421
PspN4I	GGNNCC	2 cut(s)	274, 291
PsuI	RGATCY	2 cut(s)	220, 541
PvuII	CAGCTG	1 cut(s)	579
RsaI	GTAC	2 cut(s)	53, 894
RsaNI	GTAC	2 cut(s)	52, 893
RseI	CAYNNNNRTG	4 cut(s)	11, 69, 350, 843
SalI	GTCGAC	1 cut(s)	326
SaqAI	TTAA	5 cut(s)	198, 609, 683, 719, 998
SatI	GCNGC	3 cut(s)	245, 248, 525
Sau3AI	GATC	4 cut(s)	220, 541, 583, 829
SchI	GAGTC	1 cut(s)	581
ScrFI	CCNGG	2 cut(s)	37, 897
SduI	GDGCHC	1 cut(s)	624
SfaNI	GCATC	3 cut(s)	635, 937, 958
SfcI	CTRYAG	1 cut(s)	1056
SmiMI	CAYNNNNRTG	4 cut(s)	11, 69, 350, 843
SmlI	CTYRAG	1 cut(s)	43
SmoI	CTYRAG	1 cut(s)	43
SphI	GCATGC	1 cut(s)	355
Sse9I	AATT	9 cut(s)	94, 150, 267, 281, 320, 408, 801, 867, 995
SsiI	CCGC	4 cut(s)	524, 624, 689, 929
SspMI	CTAG	4 cut(s)	102, 356, 497, 926
StyD4I	CCNGG	2 cut(s)	35, 895
TaaI	ACNGT	2 cut(s)	712, 793
TaqI	TCGA	6 cut(s)	75, 115, 327, 780, 878, 992
TasI	AATT	9 cut(s)	94, 150, 267, 281, 320, 408, 801, 867, 995
TauI	GCSGC	1 cut(s)	527
TfiI	GAWTC	2 cut(s)	109, 782
Tru1I	TTAA	5 cut(s)	198, 609, 683, 719, 998
Tru9I	TTAA	5 cut(s)	198, 609, 683, 719, 998
TscAI	CASTG	2 cut(s)	645, 717
TseFI	GTSAC	2 cut(s)	173, 364
TseI	GCWGC	2 cut(s)	244, 247
Tsp45I	GTSAC	2 cut(s)	173, 364
TspDTI	ATGAA	6 cut(s)	95, 274, 333, 472, 855, 900
TspRI	CASTG	2 cut(s)	645, 717
XapI	RAATTY	2 cut(s)	281, 408
XceI	RCATGY	3 cut(s)	349, 355, 744
XmiI	GTMKAC	2 cut(s)	327, 459
XspI	CTAG	4 cut(s)	102, 356, 497, 926

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.