AT5G42690

Protein of unknown function, DUF547

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
Physical Location & Seq
Reverse (-)
17116376 .. 17119892
3517 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G42690.5

Sequence Viewer

Length: 1620 bp
ATGATGATGAGTAGCAGCAGTAGCAGTAGTAATGGTAGTAGTAGTTATACAAGATGCGTTAAAACTCCATCATCTACAAATACTAACATTGGGAAGAAACTGAAAGGTTGTGAAAATGGTGTTGTAAATCGAAAGGCGTTAAATCGAGAGAAGATAATTACTCTGCAAGAAGATGTTGAAAAGTTGAGAAAGAAGCTGAGACTTGAAGAAAACATTCACCGAGCAATGGAAAGAGCATTTAGTAGGCCTCTTGGAGCACTTCCCCGTCTTCCTCCGTTTCTACCTCCATCGGTTTTGGAGTTACTTGCGGAAGTGGCTGTTTTGGAAGAGGAATTGGTTCGGTTAGAAGAACATATTGTGCATTGTAGACAAGAATTGTATCAAGAAGCAGTTTTTACATCTTCATCGATAGAGAATTTAAAATGCTCTCCTGCATTTCCTAAGCATTGGCAGACCAAATCCAAGTCAGCTTCCACTAGTGCTAGAGAATCAGAATCACCTCTTTCACGGGCACCTTGTTCTGTTTCAGTGTGTAGGAAGGGTAAAGAAAACAAGTTGAGTGCTACTTCTATCAAAACACCGATGAAGAAAACGACTATTGCTCATACACAACTGAATAAGAGTTTAGAAGCTCAAAAACTAAAGGATAGTCATAGATGTCGCAAAACAAATGCAGAGCGGAGCTCTCATGGTGGCGGTGATGAACCAAATAAAATTTCCGAGGATTTGGTTAAATGTCTGTCTAACATTTTCATGAGAATGAGCTCAATAAAGAGATCCATGGTTACAAAATCTCAAGAAAACGATAAAGATACGGCATTCAGGGATCCTTATGGAATTTGCTCTAGTTTTAGAAGAAGGGATATTGGTCGATATAAGAATTTCAGTGATGTTGAAGAAGCCTCACTTAACCAAAACAGAACGTCAAGTTCCTCTTTGTTTCTCATCCGCCAACTGAAACGATTGCTTGGAAGACTTTCTTTAGTCAACATGCAGAAACTTAATCAACAAGAGAAGTTAGCTTTCTGGATAAACATTTATAACAGCTGCATGATGAATGGTTTCCTTGAACATGGAATACCGGAGAGCCCTGATATGGTGACATTAATGCAAAAGGCGACTATAAATGTAGGAGGCCACTTTCTCAATGCAATCACGATCGAACACTTCATCCTCCGCTTACCGCATCACTCAAAATATATTTCTCCAAAGGGTTCAAAGAAAAATGAAATGGCAGTGAGAAGTAAATTTGGATTGGAATTGTCAGAGCCACTTGTAACATTTGCTCTCTCATGTGGTAGCTGGTCCTCACCCGCGGTACGGGTGTACACTGCGAGTAAAGTAGAGGAGGAGTTGGAGGTGGCGAAAAGAGAGTACCTAGAAGCATCGGTGGGGATATCGGTGGTGAAAATAGGGATACCAAAGCTGATGGATTGGTATAGTCATGACTTTGCAAAGGACATTGAATCATTGCTTGATTGGATTTTCCTTCAGTTGCCTACTGAGTTGGGTAAAGATGCTCTCAACTGTGTTGAACAAGGGATGTCTCAGTCCCCTTCTTCTACTCTTGTCCATATTATCCCTTATGACTTCACTTTTAGATATCTTTTTTCCATCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

539

Amino Acids

60.81

Weight (kDa)

9.29

Isoelectric Point (pI)

53.4

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Lzipper-MIP1 PF14389 22 - 102 2e-20 Leucine-zipper of ternary complex factor MIP1
DUF547 PF04784 306 - 434 2.8e-40 Protein of unknown function, DUF547
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1041
AccB1I GGYRCC 1 cut(s) 511
AccBSI CCGCTC 1 cut(s) 679
AccI GTMKAC 1 cut(s) 367
AccII CGCG 1 cut(s) 1316
AciI CCGC 8 cut(s) 308, 679, 696, 949, 1177, 1184, 1314, 1316
AclWI GGATC 3 cut(s) 771, 821, 834
AcsI RAATTY 5 cut(s) 415, 714, 837, 880, 1247
AcuI CTGAAG 1 cut(s) 1475
AfaI GTAC 3 cut(s) 1320, 1328, 1376
AfiI CCNNNNNNNGG 3 cut(s) 226, 1096, 1320
AgsI TTSAA 7 cut(s) 179, 206, 896, 1070, 1218, 1466, 1535
AhlI ACTAGT 1 cut(s) 476
AjuI GAANNNNNNNTTGG 2 cut(s) 700, 732
AloI GAACNNNNNNTCC 2 cut(s) 1155, 1187
AluBI AGCT 9 cut(s) 196, 470, 632, 684, 765, 1022, 1047, 1302, 1426
AluI AGCT 9 cut(s) 196, 470, 632, 684, 765, 1022, 1047, 1302, 1426
Alw21I GWGCWC 3 cut(s) 259, 686, 767
Alw26I GTCTC 2 cut(s) 193, 1551
AlwI GGATC 3 cut(s) 771, 821, 834
AoxI GGCC 2 cut(s) 245, 1135
ApeKI GCWGC 2 cut(s) 15, 1047
ApoI RAATTY 5 cut(s) 415, 714, 837, 880, 1247
AseI ATTAAT 1 cut(s) 1106
Asp700I GAANNNNTTC 4 cut(s) 213, 336, 976, 1061
AspS9I GGNCC 1 cut(s) 1305
AsuHPI GGTGA 6 cut(s) 209, 489, 710, 1111, 1302, 1417
AvaII GGWCC 1 cut(s) 1305
BaeGI GKGCMC 1 cut(s) 514
BaeI ACNNNNGTAYC 2 cut(s) 1310, 1343
BamHI GGATCC 1 cut(s) 826
BanI GGYRCC 1 cut(s) 511
BanII GRGCYC 3 cut(s) 686, 767, 1091
BbsI GAAGAC 2 cut(s) 260, 979
Bbv12I GWGCWC 3 cut(s) 259, 686, 767
BbvI GCAGC 2 cut(s) 27, 1034
BccI CCATC 3 cut(s) 76, 295, 1423
BceAI ACGGC 1 cut(s) 831
BciVI GTATCC 1 cut(s) 1410
BcoDI GTCTC 2 cut(s) 193, 1551
BcuI ACTAGT 1 cut(s) 476
BfaI CTAG 4 cut(s) 477, 483, 846, 1379
BfuI GTATCC 1 cut(s) 1410
BisI GCNGC 2 cut(s) 16, 1048
BlsI GCNGC 2 cut(s) 17, 1049
Bme18I GGWCC 1 cut(s) 1305
BmgT120I GGNCC 1 cut(s) 1305
BmiI GGNNCC 2 cut(s) 513, 828
BmsI GCATC 4 cut(s) 44, 1195, 1394, 1507
BpiI GAAGAC 2 cut(s) 260, 979
BplI GAGNNNNNCTC 2 cut(s) 668, 700
Bpu10I CCTNAGC 1 cut(s) 441
BpuEI CTTGAG 1 cut(s) 780
Bsa29I ATCGAT 1 cut(s) 407
BsaJI CCNNGG 3 cut(s) 720, 780, 1314
BsaWI WCCGGW 1 cut(s) 1081
Bsc4I CCNNNNNNNGG 3 cut(s) 226, 1096, 1320
Bse3DI GCAATG 2 cut(s) 231, 1469
BseCI ATCGAT 1 cut(s) 407
BseDI CCNNGG 3 cut(s) 720, 780, 1314
BseGI GGATG 3 cut(s) 945, 1170, 1548
BseLI CCNNNNNNNGG 3 cut(s) 226, 1096, 1320
BseMI GCAATG 2 cut(s) 231, 1469
BseMII CTCAG 3 cut(s) 188, 1494, 1562
BseRI GAGGAG 2 cut(s) 1361, 1364
BseSI GKGCMC 1 cut(s) 514
BseXI GCAGC 2 cut(s) 27, 1034
Bsh1236I CGCG 1 cut(s) 1316
Bsh1285I CGRYCG 1 cut(s) 1161
BshFI GGCC 2 cut(s) 247, 1137
BshNI GGYRCC 1 cut(s) 511
BshVI ATCGAT 1 cut(s) 407
BsiEI CGRYCG 1 cut(s) 1161
BsiHKAI GWGCWC 3 cut(s) 259, 686, 767
BsiSI CCGG 1 cut(s) 1082
BslFI GGGAC 1 cut(s) 1537
BslI CCNNNNNNNGG 3 cut(s) 226, 1096, 1320
BsmAI GTCTC 2 cut(s) 193, 1551
BsmFI GGGAC 1 cut(s) 1537
BsmI GAATGC 1 cut(s) 818
BsnI GGCC 2 cut(s) 247, 1137
Bsp1286I GDGCHC 5 cut(s) 259, 514, 686, 767, 1091
Bsp1407I TGTACA 1 cut(s) 1326
Bsp143I GATC 3 cut(s) 776, 826, 1158
Bsp19I CCATGG 1 cut(s) 780
BspACI CCGC 8 cut(s) 308, 679, 696, 949, 1177, 1184, 1314, 1316
BspANI GGCC 2 cut(s) 247, 1137
BspCNI CTCAG 3 cut(s) 189, 1495, 1561
BspDI ATCGAT 1 cut(s) 407
BspFNI CGCG 1 cut(s) 1316
BspHI TCATGA 2 cut(s) 753, 1444
BspLI GGNNCC 2 cut(s) 513, 828
BspPI GGATC 3 cut(s) 771, 821, 834
BspT107I GGYRCC 1 cut(s) 511
BsrBI CCGCTC 1 cut(s) 679
BsrDI GCAATG 2 cut(s) 231, 1469
BsrGI TGTACA 1 cut(s) 1326
BssECI CCNNGG 3 cut(s) 720, 780, 1314
BssMI GATC 3 cut(s) 776, 826, 1158
BssT1I CCWWGG 1 cut(s) 780
Bst4CI ACNGT 1 cut(s) 1529
Bst6I CTCTTC 1 cut(s) 321
BstAUI TGTACA 1 cut(s) 1326
BstDEI CTNAG 4 cut(s) 197, 441, 1503, 1548
BstDSI CCRYGG 2 cut(s) 780, 1314
BstF5I GGATG 3 cut(s) 945, 1170, 1548
BstFNI CGCG 1 cut(s) 1316
BstKTI GATC 3 cut(s) 779, 829, 1161
BstMAI GTCTC 2 cut(s) 193, 1551
BstMBI GATC 3 cut(s) 776, 826, 1158
BstMCI CGRYCG 1 cut(s) 1161
BstMWI GCNNNNNNNGC 2 cut(s) 21, 314
BstNSI RCATGY 1 cut(s) 994
BstSLI GKGCMC 1 cut(s) 514
BstUI CGCG 1 cut(s) 1316
BstV1I GCAGC 2 cut(s) 27, 1034
BstV2I GAAGAC 2 cut(s) 260, 979
BstX2I RGATCY 2 cut(s) 776, 826
BstYI RGATCY 2 cut(s) 776, 826
Bsu15I ATCGAT 1 cut(s) 407
BsuI GTATCC 1 cut(s) 1410
BsuRI GGCC 2 cut(s) 247, 1137
BsuTUI ATCGAT 1 cut(s) 407
BtgI CCRYGG 2 cut(s) 780, 1314
BtsCI GGATG 3 cut(s) 945, 1170, 1548
BtsI GCAGTG 2 cut(s) 1242, 1329
BtsIMutI CAGTG 4 cut(s) 534, 892, 1242, 1329
CciI TCATGA 2 cut(s) 753, 1444
Cfr13I GGNCC 1 cut(s) 1305
Cfr42I CCGCGG 1 cut(s) 1317
ClaI ATCGAT 1 cut(s) 407
Csp6I GTAC 3 cut(s) 1319, 1327, 1375
CviAII CATG 8 cut(s) 689, 754, 781, 991, 1051, 1073, 1293, 1445
CviQI GTAC 3 cut(s) 1319, 1327, 1375
DdeI CTNAG 4 cut(s) 197, 441, 1503, 1548
DpnI GATC 3 cut(s) 778, 828, 1160
DpnII GATC 3 cut(s) 776, 826, 1158
DraI TTTAAA 1 cut(s) 420
Eam1104I CTCTTC 1 cut(s) 321
EarI CTCTTC 1 cut(s) 321
EciI GGCGGA 1 cut(s) 938
Ecl136II GAGCTC 2 cut(s) 684, 765
Eco130I CCWWGG 1 cut(s) 780
Eco147I AGGCCT 1 cut(s) 247
Eco24I GRGCYC 3 cut(s) 686, 767, 1091
Eco32I GATATC 2 cut(s) 1398, 1604
Eco47I GGWCC 1 cut(s) 1305
Eco53kI GAGCTC 2 cut(s) 684, 765
Eco57I CTGAAG 1 cut(s) 1475
EcoICRI GAGCTC 2 cut(s) 684, 765
EcoRV GATATC 2 cut(s) 1398, 1604
EcoT14I CCWWGG 1 cut(s) 780
EcoT38I GRGCYC 3 cut(s) 686, 767, 1091
ErhI CCWWGG 1 cut(s) 780
FaeI CATG 8 cut(s) 692, 757, 784, 994, 1054, 1076, 1296, 1448
FalI AAGNNNNNCTT 6 cut(s) 891, 923, 919, 951, 964, 996
FaqI GGGAC 1 cut(s) 1537
FatI CATG 8 cut(s) 688, 753, 780, 990, 1050, 1072, 1292, 1444
FauI CCCGC 1 cut(s) 1321
FblI GTMKAC 1 cut(s) 367
Fnu4HI GCNGC 2 cut(s) 16, 1048
FokI GGATG 3 cut(s) 932, 1157, 1555
FriOI GRGCYC 3 cut(s) 686, 767, 1091
Fsp4HI GCNGC 2 cut(s) 16, 1048
FspBI CTAG 4 cut(s) 477, 483, 846, 1379
GluI GCNGC 2 cut(s) 16, 1048
HaeIII GGCC 2 cut(s) 247, 1137
HapII CCGG 1 cut(s) 1082
Hin1II CATG 8 cut(s) 692, 757, 784, 994, 1054, 1076, 1296, 1448
HincII GTYRAC 1 cut(s) 988
HindII GTYRAC 1 cut(s) 988
HinfI GANTC 3 cut(s) 488, 494, 1466
HpaII CCGG 1 cut(s) 1082
HphI GGTGA 6 cut(s) 209, 489, 710, 1111, 1302, 1417
Hpy166II GTNNAC 4 cut(s) 368, 988, 1327, 1329
Hpy188I TCNGA 4 cut(s) 493, 721, 1267, 1619
Hpy188III TCNNGA 7 cut(s) 146, 383, 754, 797, 1027, 1156, 1445
Hpy8I GTNNAC 4 cut(s) 368, 988, 1327, 1329
HpyAV CCTTC 4 cut(s) 532, 852, 1499, 1566
HpyCH4III ACNGT 1 cut(s) 1529
HpyCH4IV ACGT 1 cut(s) 923
HpyCH4V TGCA 9 cut(s) 166, 361, 434, 674, 994, 1050, 1111, 1151, 1454
HpyF10VI GCNNNNNNNGC 2 cut(s) 21, 314
HpyF3I CTNAG 4 cut(s) 197, 441, 1503, 1548
HpySE526I ACGT 1 cut(s) 923
Hsp92II CATG 8 cut(s) 692, 757, 784, 994, 1054, 1076, 1296, 1448
KspI CCGCGG 1 cut(s) 1317
Kzo9I GATC 3 cut(s) 776, 826, 1158
LmnI GCTCC 2 cut(s) 254, 681
LpnPI CCDG 6 cut(s) 444, 808, 1012, 1095, 1104, 1288
Lsp1109I GCAGC 2 cut(s) 27, 1034
LweI GCATC 4 cut(s) 44, 1195, 1394, 1507
MaeI CTAG 4 cut(s) 477, 483, 846, 1379
MaeII ACGT 1 cut(s) 923
MaeIII GTNAC 4 cut(s) 300, 784, 1099, 1276
MalI GATC 3 cut(s) 778, 828, 1160
MbiI CCGCTC 1 cut(s) 679
MboI GATC 3 cut(s) 776, 826, 1158
MflI RGATCY 2 cut(s) 776, 826
MhlI GDGCHC 5 cut(s) 259, 514, 686, 767, 1091
MluCI AATT 9 cut(s) 156, 332, 374, 415, 714, 837, 880, 1247, 1259
MmeI TCCRAC 1 cut(s) 1335
MroXI GAANNNNTTC 4 cut(s) 213, 336, 976, 1061
MseI TTAA 7 cut(s) 60, 140, 419, 732, 909, 1002, 1106
MslI CAYNNNNRTG 2 cut(s) 752, 758
MspA1I CMGCKG 2 cut(s) 1047, 1316
MspI CCGG 1 cut(s) 1082
Mva1269I GAATGC 1 cut(s) 818
MvnI CGCG 1 cut(s) 1316
MwoI GCNNNNNNNGC 2 cut(s) 21, 314
NcoI CCATGG 1 cut(s) 780
NdeII GATC 3 cut(s) 776, 826, 1158
NlaIII CATG 8 cut(s) 692, 757, 784, 994, 1054, 1076, 1296, 1448
NlaIV GGNNCC 2 cut(s) 513, 828
NmuCI GTSAC 1 cut(s) 1099
NspI RCATGY 1 cut(s) 994
PagI TCATGA 2 cut(s) 753, 1444
PceI AGGCCT 1 cut(s) 247
PctI GAATGC 1 cut(s) 818
PdmI GAANNNNTTC 4 cut(s) 213, 336, 976, 1061
PfeI GAWTC 3 cut(s) 488, 494, 1466
PkrI GCNGC 2 cut(s) 17, 1049
Ple19I CGATCG 1 cut(s) 1161
PshBI ATTAAT 1 cut(s) 1106
PsiI TTATAA 1 cut(s) 1041
Psp124BI GAGCTC 2 cut(s) 686, 767
PspN4I GGNNCC 2 cut(s) 513, 828
PspPI GGNCC 1 cut(s) 1305
PsrI GAACNNNNNNTAC 2 cut(s) 1062, 1094
PsuI RGATCY 2 cut(s) 776, 826
PvuI CGATCG 1 cut(s) 1161
PvuII CAGCTG 1 cut(s) 1047
RsaI GTAC 3 cut(s) 1320, 1328, 1376
RsaNI GTAC 3 cut(s) 1319, 1327, 1375
RseI CAYNNNNRTG 2 cut(s) 752, 758
SacI GAGCTC 2 cut(s) 686, 767
SacII CCGCGG 1 cut(s) 1317
SaqAI TTAA 7 cut(s) 60, 140, 419, 732, 909, 1002, 1106
SatI GCNGC 2 cut(s) 16, 1048
Sau3AI GATC 3 cut(s) 776, 826, 1158
Sau96I GGNCC 1 cut(s) 1305
SduI GDGCHC 5 cut(s) 259, 514, 686, 767, 1091
SfaNI GCATC 4 cut(s) 44, 1195, 1394, 1507
Sfr303I CCGCGG 1 cut(s) 1317
SgrBI CCGCGG 1 cut(s) 1317
SinI GGWCC 1 cut(s) 1305
SmiMI CAYNNNNRTG 2 cut(s) 752, 758
SmlI CTYRAG 1 cut(s) 795
SmoI CTYRAG 1 cut(s) 795
SpeI ACTAGT 1 cut(s) 476
Sse9I AATT 9 cut(s) 156, 332, 374, 415, 714, 837, 880, 1247, 1259
SseBI AGGCCT 1 cut(s) 247
SsiI CCGC 8 cut(s) 308, 679, 696, 949, 1177, 1184, 1314, 1316
SspMI CTAG 4 cut(s) 477, 483, 846, 1379
SstI GAGCTC 2 cut(s) 686, 767
StuI AGGCCT 1 cut(s) 247
StyI CCWWGG 1 cut(s) 780
TaaI ACNGT 1 cut(s) 1529
TaiI ACGT 1 cut(s) 926
TaqI TCGA 5 cut(s) 130, 145, 407, 871, 1161
TasI AATT 9 cut(s) 156, 332, 374, 415, 714, 837, 880, 1247, 1259
TatI WGTACW 1 cut(s) 1326
TfiI GAWTC 3 cut(s) 488, 494, 1466
Tru1I TTAA 7 cut(s) 60, 140, 419, 732, 909, 1002, 1106
Tru9I TTAA 7 cut(s) 60, 140, 419, 732, 909, 1002, 1106
TscAI CASTG 4 cut(s) 534, 892, 1242, 1336
TseFI GTSAC 1 cut(s) 1099
TseI GCWGC 2 cut(s) 15, 1047
Tsp45I GTSAC 1 cut(s) 1099
TspDTI ATGAA 7 cut(s) 393, 599, 717, 742, 1070, 1159, 1242
TspGWI ACGGA 1 cut(s) 264
TspRI CASTG 4 cut(s) 534, 892, 1242, 1336
VpaK11BI GGWCC 1 cut(s) 1305
VspI ATTAAT 1 cut(s) 1106
XapI RAATTY 5 cut(s) 415, 714, 837, 880, 1247
XceI RCATGY 1 cut(s) 994
XmiI GTMKAC 1 cut(s) 367
XmnI GAANNNNTTC 4 cut(s) 213, 336, 976, 1061
XspI CTAG 4 cut(s) 477, 483, 846, 1379
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.