Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0003187

Physical Location & Seq

Genomic Coordinates Forward (+)

65352372 .. 65356737

Gene Structure 4366 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG433300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1206 bp

ATGCTAGGGAGTAAAGAAAGGAATACCACAAAGGCAATAAGCCTTGGAAGAGCTTCAAGAAGAGAGAGAAAATTGGCTTTACAACAAGATGTTGATAAGCTGAAGAAGAAGCTTAGACATGAAGAGAATGTGCACAGAGCTTTGCAGAGGGCATTTAATAGACCCCTGGGAGCTCTACCTCGTCTACCGCCTTATCTGCCTCCTTATACATTAGAGCTTCTTGCTGAGGTTGCTGTTTTGGAAGAGGAAGTTGTTCGGCTTGAAGAGCAAGTAGTGCATGTTAGGAAGAACCTATATCAGGAAGCTGTCAACATATCAACTTCCAAGAGGAGCTTAGAAACCTCAGCTGAATTATGTGATTCACACCCTAAAAAGAATCCTAAATTTCAAGGTCGAAGAGTGGTCACTGATACAGCGGTGAAGCATTTGCCACCCTCTTCTGATGATAAGCAGGGGAAAGAGAATCAATCATGTGATCCCTCAATGAAGAACAACAAGAAATCCTTGATCCATAGCAATACTCAGGTTAAGACTCCAGTGAAGAGACCTCCAATTGATATCAAAATAGCACAAAAGCGTTTAGATTCTCCAAAACTACAGTTAGAAGTTAGAGTGACAGAACAAGACAGCGCGGAAGTAAGACTTCCTAGTATTCCAGAAAAAAATCTATCTGGAGATGACAACCCAAACAGAATATCTGAAAATATTCTGAAGTGCTTATCAAGCATTCTCCTGAGAATGAGTTCAGCAAAGGGCACTACAGAAAACCAGCCTTCCTTTTCAACATTAGGAATTCAAGAAAGCAATGAAAGACCAGAATTTTGGGATCCTTATGGTATCTGTTCAGAATTTGGAAAGAGAGATATTGGTCCGTATAAGCAATTATACTCAGTTGAAGCCCGTTCTATTAATCCTAACCGAACAGCTAGCTCTTTGTTCCTGTTCCGAAGATTGAAATTACTGCTTGGGAAACTTGCCTCTGTAAATTTGAAACGCCTCAGTCATCAAGAGAAGCTTGCATTCTGGATCAATATCTACAATTCCTGTATGATGAATGCTTTCCTAGAACACGGAATACCAGAGAGGCCTGAAATAATTGTCGCACTAATGCAGAAGGTATGGAATATCGAAGATCCTAATGTCCTACATGTTCTATTATTCATAATTATAATTGAATTTCTACATACCCACATTGCAAACAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF547 Lzipper-MIP1

Protein Analysis

401

Amino Acids

45.79

Weight (kDa)

9.53

Isoelectric Point (pI)

57.85

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Lzipper-MIP1	PF14389	20 - 101	6.4e-23	Leucine-zipper of ternary complex factor MIP1
DUF547	PF04784	331 - 373	2.4e-10	Protein of unknown function, DUF547

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003187)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G42690 AT5G42690 AT5G42690 AT5G42690 AT5G42690
fragaria_vesca	FvH4_2g34930 FvH4_2g34930 FvH4_2g34930 FvH4_2g34930 FvH4_2g34930 FvH4_2g34930 FvH4_2g34930 FvH4_2g34930 FvH4_2g34930 FvH4_2g34930 FvH4_2g34930
malus_domestica	MD08G1106800.v1.1 MD15G1087500.v1.1
prunus_persica	Prupe.1G441200_v2.0.a1 Prupe.1G441200_v2.0.a1 Prupe.1G441200_v2.0.a1 Prupe.1G441200_v2.0.a1
pyrus_communis	pycom08g08840 pycom15g08230
rosa_chinensis	RchiOBHm_Chr6g0307071
rosa_laevigata	RLG00000010736
rosa_multiflora	Rmu_sc0005634.1_g000003
rosa_roxburghii	Rroxscaffold_7G00161180
rosa_rugosa	Rorug06G0355700 Rorug06G0355800 Rorug06G0355900 Rorug06G0356000
rosa_samantha	Rh6AG467200 Rh6BG433300 Rh6CG482700 Rh6DG469000
rosa_wichuraiana	Rw6G040730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1169
AccI	GTMKAC	1 cut(s)	184
AccII	CGCG	1 cut(s)	632
AciI	CCGC	3 cut(s)	188, 416, 632
AclWI	GGATC	6 cut(s)	470, 502, 821, 834, 1034, 1127
AcsI	RAATTY	6 cut(s)	383, 792, 818, 848, 985, 1175
AcuI	CTGAAG	2 cut(s)	122, 731
AfiI	CCNNNNNNNGG	1 cut(s)	298
AflIII	ACRYGT	1 cut(s)	1147
AgsI	TTSAA	9 cut(s)	57, 263, 389, 783, 797, 896, 955, 991, 1175
AjnI	CCWGG	1 cut(s)	165
Alw21I	GWGCWC	2 cut(s)	135, 175
Alw26I	GTCTC	1 cut(s)	538
Alw44I	GTGCAC	1 cut(s)	131
AlwI	GGATC	6 cut(s)	470, 502, 821, 834, 1034, 1127
AoxI	GGCC	1 cut(s)	1085
ApaLI	GTGCAC	1 cut(s)	131
ApoI	RAATTY	6 cut(s)	383, 792, 818, 848, 985, 1175
ArsI	GACNNNNNNTTYG	2 cut(s)	804, 836
AseI	ATTAAT	1 cut(s)	909
Asp700I	GAANNNNTTC	5 cut(s)	52, 252, 705, 742, 1058
AspLEI	GCGC	1 cut(s)	632
AspS9I	GGNCC	1 cut(s)	869
AsuHPI	GGTGA	1 cut(s)	430
AsuNHI	GCTAGC	1 cut(s)	926
AvaII	GGWCC	1 cut(s)	869
BaeGI	GKGCMC	2 cut(s)	135, 758
BaeI	ACNNNNGTAYC	2 cut(s)	402, 435
BamHI	GGATCC	1 cut(s)	826
BanII	GRGCYC	1 cut(s)	175
Bbv12I	GWGCWC	2 cut(s)	135, 175
BbvCI	CCTCAGC	2 cut(s)	225, 343
BciT130I	CCWGG	1 cut(s)	167
BcoDI	GTCTC	1 cut(s)	538
BfaI	CTAG	4 cut(s)	5, 648, 927, 1064
BfmI	CTRYAG	2 cut(s)	596, 759
Bme1390I	CCNGG	1 cut(s)	167
Bme18I	GGWCC	1 cut(s)	869
BmgT120I	GGNCC	1 cut(s)	869
BmiI	GGNNCC	1 cut(s)	828
BmrFI	CCNGG	1 cut(s)	167
BmtI	GCTAGC	1 cut(s)	930
BpmI	CTGGAG	2 cut(s)	519, 693
Bpu10I	CCTNAGC	2 cut(s)	225, 343
BsaBI	GATNNNNATC	1 cut(s)	1031
BsaI	GGTCTC	1 cut(s)	538
BsaJI	CCNNGG	3 cut(s)	43, 165, 166
Bsc4I	CCNNNNNNNGG	1 cut(s)	298
Bse1I	ACTGG	1 cut(s)	536
Bse3DI	GCAATG	2 cut(s)	811, 1191
Bse8I	GATNNNNATC	1 cut(s)	1031
BseBI	CCWGG	1 cut(s)	167
BseDI	CCNNGG	3 cut(s)	43, 165, 166
BseJI	GATNNNNATC	1 cut(s)	1031
BseLI	CCNNNNNNNGG	1 cut(s)	298
BseMI	GCAATG	2 cut(s)	811, 1191
BseMII	CTCAG	6 cut(s)	216, 357, 536, 725, 903, 1012
BseNI	ACTGG	1 cut(s)	536
BseRI	GAGGAG	1 cut(s)	343
BseSI	GKGCMC	2 cut(s)	135, 758
Bsh1236I	CGCG	1 cut(s)	632
BshFI	GGCC	1 cut(s)	1087
BsiHKAI	GWGCWC	2 cut(s)	135, 175
BslI	CCNNNNNNNGG	1 cut(s)	298
BsmAI	GTCTC	1 cut(s)	538
BsmI	GAATGC	3 cut(s)	726, 1019, 1060
BsnI	GGCC	1 cut(s)	1087
Bso31I	GGTCTC	1 cut(s)	538
Bsp1286I	GDGCHC	3 cut(s)	135, 175, 758
Bsp143I	GATC	5 cut(s)	475, 507, 826, 1026, 1132
BspACI	CCGC	3 cut(s)	188, 416, 632
BspANI	GGCC	1 cut(s)	1087
BspCNI	CTCAG	6 cut(s)	217, 356, 535, 726, 902, 1011
BspFNI	CGCG	1 cut(s)	632
BspLI	GGNNCC	1 cut(s)	828
BspOI	GCTAGC	1 cut(s)	930
BspPI	GGATC	6 cut(s)	470, 502, 821, 834, 1034, 1127
BspQI	GCTCTTC	2 cut(s)	43, 258
BspTNI	GGTCTC	1 cut(s)	538
BsrDI	GCAATG	2 cut(s)	811, 1191
BsrI	ACTGG	1 cut(s)	536
BssECI	CCNNGG	3 cut(s)	43, 165, 166
BssMI	GATC	5 cut(s)	475, 507, 826, 1026, 1132
BssT1I	CCWWGG	1 cut(s)	43
Bst2UI	CCWGG	1 cut(s)	167
Bst4CI	ACNGT	1 cut(s)	600
Bst6I	CTCTTC	8 cut(s)	43, 55, 117, 237, 258, 391, 442, 536
BstAPI	GCANNNNNTGC	1 cut(s)	274
BstC8I	GCNNGC	2 cut(s)	928, 1017
BstDEI	CTNAG	8 cut(s)	113, 225, 334, 343, 522, 734, 889, 998
BstENI	CCTNNNNNAGG	1 cut(s)	296
BstFNI	CGCG	1 cut(s)	632
BstHHI	GCGC	1 cut(s)	632
BstKTI	GATC	5 cut(s)	478, 510, 829, 1029, 1135
BstMAI	GTCTC	1 cut(s)	538
BstMBI	GATC	5 cut(s)	475, 507, 826, 1026, 1132
BstMWI	GCNNNNNNNGC	5 cut(s)	196, 230, 265, 274, 723
BstNI	CCWGG	1 cut(s)	167
BstNSI	RCATGY	2 cut(s)	281, 1151
BstSCI	CCNGG	1 cut(s)	165
BstSFI	CTRYAG	2 cut(s)	596, 759
BstSLI	GKGCMC	2 cut(s)	135, 758
BstUI	CGCG	1 cut(s)	632
BstX2I	RGATCY	2 cut(s)	826, 1132
BstXI	CCANNNNNNTGG	1 cut(s)	822
BstYI	RGATCY	2 cut(s)	826, 1132
BsuRI	GGCC	1 cut(s)	1087
BtsIMutI	CAGTG	2 cut(s)	405, 543
Cac8I	GCNNGC	2 cut(s)	928, 1017
CfoI	GCGC	1 cut(s)	632
Cfr13I	GGNCC	1 cut(s)	869
CviAII	CATG	4 cut(s)	119, 278, 471, 1148
DdeI	CTNAG	8 cut(s)	113, 225, 334, 343, 522, 734, 889, 998
DpnI	GATC	5 cut(s)	477, 509, 828, 1028, 1134
DpnII	GATC	5 cut(s)	475, 507, 826, 1026, 1132
Eam1104I	CTCTTC	8 cut(s)	43, 55, 117, 237, 258, 391, 442, 536
EarI	CTCTTC	8 cut(s)	43, 55, 117, 237, 258, 391, 442, 536
Ecl136II	GAGCTC	1 cut(s)	173
Eco130I	CCWWGG	1 cut(s)	43
Eco147I	AGGCCT	1 cut(s)	1087
Eco24I	GRGCYC	1 cut(s)	175
Eco31I	GGTCTC	1 cut(s)	538
Eco32I	GATATC	1 cut(s)	559
Eco47I	GGWCC	1 cut(s)	869
Eco53kI	GAGCTC	1 cut(s)	173
Eco57I	CTGAAG	2 cut(s)	122, 731
EcoICRI	GAGCTC	1 cut(s)	173
EcoNI	CCTNNNNNAGG	1 cut(s)	296
EcoRI	GAATTC	1 cut(s)	792
EcoRII	CCWGG	1 cut(s)	165
EcoRV	GATATC	1 cut(s)	559
EcoT14I	CCWWGG	1 cut(s)	43
EcoT38I	GRGCYC	1 cut(s)	175
ErhI	CCWWGG	1 cut(s)	43
FaeI	CATG	4 cut(s)	122, 281, 474, 1151
FalI	AAGNNNNNCTT	8 cut(s)	317, 349, 488, 520, 627, 659, 999, 1031
FatI	CATG	4 cut(s)	118, 277, 470, 1147
FblI	GTMKAC	1 cut(s)	184
FriOI	GRGCYC	1 cut(s)	175
FspBI	CTAG	4 cut(s)	5, 648, 927, 1064
GlaI	GCGC	1 cut(s)	631
GsuI	CTGGAG	2 cut(s)	519, 693
HaeIII	GGCC	1 cut(s)	1087
HhaI	GCGC	1 cut(s)	632
Hin1II	CATG	4 cut(s)	122, 281, 474, 1151
Hin6I	GCGC	1 cut(s)	630
HinP1I	GCGC	1 cut(s)	630
HincII	GTYRAC	1 cut(s)	310
HindII	GTYRAC	1 cut(s)	310
HindIII	AAGCTT	2 cut(s)	110, 1013
HinfI	GANTC	5 cut(s)	359, 376, 463, 532, 584
HphI	GGTGA	1 cut(s)	430
Hpy166II	GTNNAC	3 cut(s)	133, 185, 310
Hpy188I	TCNGA	5 cut(s)	442, 700, 711, 847, 947
Hpy188III	TCNNGA	8 cut(s)	57, 299, 656, 672, 733, 797, 1007, 1024
Hpy8I	GTNNAC	3 cut(s)	133, 185, 310
HpyAV	CCTTC	2 cut(s)	783, 1108
HpyCH4III	ACNGT	1 cut(s)	600
HpyCH4V	TGCA	6 cut(s)	133, 145, 277, 1019, 1111, 1196
HpyF10VI	GCNNNNNNNGC	5 cut(s)	196, 230, 265, 274, 723
HpyF3I	CTNAG	8 cut(s)	113, 225, 334, 343, 522, 734, 889, 998
Hsp92II	CATG	4 cut(s)	122, 281, 474, 1151
HspAI	GCGC	1 cut(s)	630
Kzo9I	GATC	5 cut(s)	475, 507, 826, 1026, 1132
LguI	GCTCTTC	2 cut(s)	43, 258
LmnI	GCTCC	2 cut(s)	170, 330
MaeI	CTAG	4 cut(s)	5, 648, 927, 1064
MaeIII	GTNAC	2 cut(s)	403, 613
MalI	GATC	5 cut(s)	477, 509, 828, 1028, 1134
MboI	GATC	5 cut(s)	475, 507, 826, 1026, 1132
MfeI	CAATTG	2 cut(s)	552, 1201
MflI	RGATCY	2 cut(s)	826, 1132
MhlI	GDGCHC	3 cut(s)	135, 175, 758
MlyI	GAGTC	1 cut(s)	526
MroXI	GAANNNNTTC	5 cut(s)	52, 252, 705, 742, 1058
MseI	TTAA	3 cut(s)	156, 528, 909
MspA1I	CMGCKG	2 cut(s)	347, 416
MspR9I	CCNGG	1 cut(s)	167
MunI	CAATTG	2 cut(s)	552, 1201
Mva1269I	GAATGC	3 cut(s)	726, 1019, 1060
MvaI	CCWGG	1 cut(s)	167
MvnI	CGCG	1 cut(s)	632
MwoI	GCNNNNNNNGC	5 cut(s)	196, 230, 265, 274, 723
NdeII	GATC	5 cut(s)	475, 507, 826, 1026, 1132
NheI	GCTAGC	1 cut(s)	926
NlaIII	CATG	4 cut(s)	122, 281, 474, 1151
NlaIV	GGNNCC	1 cut(s)	828
NmuCI	GTSAC	2 cut(s)	403, 613
NspI	RCATGY	2 cut(s)	281, 1151
PasI	CCCWGGG	1 cut(s)	166
PceI	AGGCCT	1 cut(s)	1087
PciI	ACATGT	1 cut(s)	1147
PciSI	GCTCTTC	2 cut(s)	43, 258
PctI	GAATGC	3 cut(s)	726, 1019, 1060
PdmI	GAANNNNTTC	5 cut(s)	52, 252, 705, 742, 1058
PfeI	GAWTC	4 cut(s)	359, 376, 463, 584
PleI	GAGTC	1 cut(s)	526
PpsI	GAGTC	1 cut(s)	526
PscI	ACATGT	1 cut(s)	1147
PshBI	ATTAAT	1 cut(s)	909
PsiI	TTATAA	1 cut(s)	1169
Psp124BI	GAGCTC	1 cut(s)	175
Psp6I	CCWGG	1 cut(s)	165
PspGI	CCWGG	1 cut(s)	165
PspN4I	GGNNCC	1 cut(s)	828
PspPI	GGNCC	1 cut(s)	869
PsrI	GAACNNNNNNTAC	2 cut(s)	1059, 1091
PsuI	RGATCY	2 cut(s)	826, 1132
PvuII	CAGCTG	1 cut(s)	347
SacI	GAGCTC	1 cut(s)	175
SapI	GCTCTTC	2 cut(s)	43, 258
SaqAI	TTAA	3 cut(s)	156, 528, 909
Sau3AI	GATC	5 cut(s)	475, 507, 826, 1026, 1132
Sau96I	GGNCC	1 cut(s)	869
SchI	GAGTC	1 cut(s)	526
ScrFI	CCNGG	1 cut(s)	167
SduI	GDGCHC	3 cut(s)	135, 175, 758
SfcI	CTRYAG	2 cut(s)	596, 759
SinI	GGWCC	1 cut(s)	869
SseBI	AGGCCT	1 cut(s)	1087
SsiI	CCGC	3 cut(s)	188, 416, 632
SspI	AATATT	1 cut(s)	706
SspMI	CTAG	4 cut(s)	5, 648, 927, 1064
SstI	GAGCTC	1 cut(s)	175
StuI	AGGCCT	1 cut(s)	1087
StyD4I	CCNGG	1 cut(s)	165
StyI	CCWWGG	1 cut(s)	43
TaaI	ACNGT	1 cut(s)	600
TaqI	TCGA	2 cut(s)	394, 1128
TfiI	GAWTC	4 cut(s)	359, 376, 463, 584
Tru1I	TTAA	3 cut(s)	156, 528, 909
Tru9I	TTAA	3 cut(s)	156, 528, 909
TscAI	CASTG	2 cut(s)	412, 543
TseFI	GTSAC	2 cut(s)	403, 613
Tsp45I	GTSAC	2 cut(s)	403, 613
TspDTI	ATGAA	5 cut(s)	135, 500, 822, 1067, 1150
TspGWI	ACGGA	2 cut(s)	861, 1086
TspRI	CASTG	2 cut(s)	412, 543
VneI	GTGCAC	1 cut(s)	131
VpaK11BI	GGWCC	1 cut(s)	869
VspI	ATTAAT	1 cut(s)	909
XagI	CCTNNNNNAGG	1 cut(s)	296
XapI	RAATTY	6 cut(s)	383, 792, 818, 848, 985, 1175
XceI	RCATGY	2 cut(s)	281, 1151
XmiI	GTMKAC	1 cut(s)	184
XmnI	GAANNNNTTC	5 cut(s)	52, 252, 705, 742, 1058
XspI	CTAG	4 cut(s)	5, 648, 927, 1064

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.