Prupe.1G441200_v2.0.a1

isoform X1

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
Physical Location & Seq
Forward (+)
37465198 .. 37469360
4163 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G441200.3

Sequence Viewer

Length: 1695 bp
ATGAATACCAGAGTGAAGACAAGGCTGCAGTCTATGAAGCCTCCTCTGAAGAACGAAAAAGAGAAGGTAAAAATGCAAGGGAGTAAGCTAAGGGATACCGCAAAAACAATCACCAATGGACGAGGTTCACGGAGAGAGAGAAAATTGGCTTTACAACAAGACGTTGATAAGCTGAAGAAGAAGCTTAGACATGAAGAGAATGTACACAGAGCTTTGCAGAGGGCATTTACTAGACCCTTGGGAGCTCTACCTCGTCTACCTCCTTATCTGCCTCCTTATACATTGGAGCTTCTAGCCGAGGTGGCTGTTCTGGAAGAGGAGGTGGTTCGGCTAGAAGAACAGCTAGTGCATTTTAGGAAGGATTTGTATCAGGAAGCTGTCAACATATCAACCTCCAAGAGGAAAATGGAAACCTCAGCTGATTTGTGTGATTCATACCCCATAAAGAATCCCAAACAGGAGCAACCCAAATCTCAAGCTCAAAAAGCAAACAAATCGACCAATGCCACAGAGAAGCATTGGCCATCCCCTTCTGATGATAAGCAGGGGAAAGAGAACCAATCTTCTAACAATTCTACAAAGAAGAACAACGAGAAATCTTTGATCCATAAAGCTCAGGTTAGGACTCCAGTGAAGAGACCTCCAATTGATCACAAAACAGCAGAAAAGCGTTCAGATCCTCAGAAACTACAGTTAGAATATAGAGTCATGGACCAAGAAAGTGCACAAGTACCAGACAAAGCGATGTCAGGAGATGAAAGTCCCAACAAAATTTCTGAAAACATTCTGAAATGCTTGTCAAGCATTCTCATGAGAATGAGTTCAGCAAAGGGCTCTGCCGAAAGTTTACCTTCCTTCTCAACATTAGCAGCTCAAGAAAATAATGAACCAAAAGAATCTTGGGATCCTTATGCTATTTGTTCCGAATTTGGACGAAGAGATATCGGTCCATATAAGCAATTACATGCAATTGAAGCTGAAACTATTAATCCAAACCAAACAGCAAATGCTTTGTTCCTACTCCGAAGATTGAAGCTACTGCTCCGAAAACTTGCGTCTGTAAATTTACAACATCTCAGTCATCAGGAGAAGCTTGCATTCTGGATCAATATCTACAATTCCTGCATGATGAATGCATTCTTAGAGCACGGAATACCTGAGAGTCCTGAGATAATTGTTGCACTCATGCAGAAGGCAACAATAAATGTTGGAGGACACTTGTTAAATGCAATAACGATTGAACACTTTATCTTGAGACTGCCTTATCACTCAAAATATACCTTATCCAAGGGTACAAAAAATGATGAGAAGACAGCAAGAAGCATTTTTGGATTGGAATTATCTGAACCTTTGGTCACCTTTGCACTATCATGTGGAAGCTGGTCGTCCCCTGCTGTGAGAGTGTATACTGCATCCCAAGTTGAGAATGAACTGGAAGTGGCAAAAAGAGAGTACTTACAAGCTGCAGTTGGAATTTCATCAACTAAATTTGCAATTCCAAAACTCTTGAACTGGTATCTGCCTGATTTTGCAAAGGACATAGAGTCACTGCTGGACTGGATCTGCCTTCAGCTACCAAGTGAACTGGGAAAAGACGCAATTAAGCTGCTTGAAAGAGGGAAAAATGAGCCTCTTTCACAGGTGGTTCAAATTATACCTTATGAGTTCAGTTTTAGGTACCTCCTGTCCACATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

565

Amino Acids

64.09

Weight (kDa)

9.33

Isoelectric Point (pI)

53.75

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 1677
AccB1I GGYRCC 1 cut(s) 1677
AccI GTMKAC 2 cut(s) 256, 1406
AciI CCGC 1 cut(s) 99
AclWI GGATC 6 cut(s) 598, 671, 899, 912, 1112, 1568
AcoI YGGCCR 1 cut(s) 521
AcsI RAATTY 5 cut(s) 771, 926, 1063, 1473, 1487
AcuI CTGAAG 3 cut(s) 68, 194, 1553
AfaI GTAC 5 cut(s) 204, 732, 1294, 1454, 1679
AfiI CCNNNNNNNGG 1 cut(s) 399
AgsI TTSAA 6 cut(s) 974, 1033, 1241, 1510, 1613, 1649
AhdI GACNNNNNGTC 1 cut(s) 1543
Alw21I GWGCWC 3 cut(s) 247, 727, 1149
Alw26I GTCTC 2 cut(s) 631, 1249
Alw44I GTGCAC 1 cut(s) 723
AlwI GGATC 6 cut(s) 598, 671, 899, 912, 1112, 1568
AoxI GGCC 1 cut(s) 521
ApaLI GTGCAC 1 cut(s) 723
ApeKI GCWGC 4 cut(s) 25, 869, 1463, 1606
ApoI RAATTY 5 cut(s) 771, 926, 1063, 1473, 1487
AseI ATTAAT 1 cut(s) 987
Asp700I GAANNNNTTC 3 cut(s) 783, 820, 1136
Asp718I GGTACC 1 cut(s) 1677
AspS9I GGNCC 2 cut(s) 712, 947
AsuHPI GGTGA 2 cut(s) 103, 1348
AvaII GGWCC 2 cut(s) 712, 947
BaeGI GKGCMC 1 cut(s) 727
BalI TGGCCA 1 cut(s) 523
BamHI GGATCC 1 cut(s) 904
BanI GGYRCC 1 cut(s) 1677
BanII GRGCYC 2 cut(s) 247, 836
BarI GAAGNNNNNNTAC 2 cut(s) 186, 218
BbsI GAAGAC 2 cut(s) 23, 1316
Bbv12I GWGCWC 3 cut(s) 247, 727, 1149
BbvCI CCTCAGC 1 cut(s) 415
BbvI GCAGC 4 cut(s) 12, 881, 1450, 1593
BccI CCATC 1 cut(s) 532
BcgI CGANNNNNNTGC 2 cut(s) 477, 511
BciVI GTATCC 1 cut(s) 88
BclI TGATCA 1 cut(s) 649
BcoDI GTCTC 2 cut(s) 631, 1249
BfaI CTAG 4 cut(s) 231, 293, 332, 344
BfmI CTRYAG 3 cut(s) 26, 689, 1464
BfuI GTATCC 1 cut(s) 88
BglI GCCNNNNNGGC 1 cut(s) 302
BisI GCNGC 4 cut(s) 26, 870, 1464, 1607
BlsI GCNGC 4 cut(s) 27, 871, 1465, 1608
BmcAI AGTACT 1 cut(s) 1454
Bme18I GGWCC 2 cut(s) 712, 947
BmeRI GACNNNNNGTC 1 cut(s) 1543
BmgT120I GGNCC 2 cut(s) 712, 947
BmiI GGNNCC 2 cut(s) 906, 1679
BmrI ACTGGG 1 cut(s) 1595
BmsI GCATC 1 cut(s) 1421
BmuI ACTGGG 1 cut(s) 1595
BpiI GAAGAC 2 cut(s) 23, 1316
BpmI CTGGAG 1 cut(s) 612
Bpu10I CCTNAGC 3 cut(s) 89, 415, 615
BpuEI CTTGAG 3 cut(s) 459, 858, 1273
BsaBI GATNNNNATC 2 cut(s) 366, 1109
BsaI GGTCTC 1 cut(s) 631
BsaJI CCNNGG 3 cut(s) 237, 297, 1287
Bsc4I CCNNNNNNNGG 1 cut(s) 399
Bse1I ACTGG 5 cut(s) 629, 1437, 1517, 1562, 1590
Bse8I GATNNNNATC 2 cut(s) 366, 1109
BseDI CCNNGG 3 cut(s) 237, 297, 1287
BseGI GGATG 2 cut(s) 524, 1412
BseJI GATNNNNATC 2 cut(s) 366, 1109
BseLI CCNNNNNNNGG 1 cut(s) 399
BseMII CTCAG 6 cut(s) 429, 629, 695, 1090, 1149, 1158
BseNI ACTGG 5 cut(s) 629, 1437, 1517, 1562, 1590
BseRI GAGGAG 2 cut(s) 33, 332
BseSI GKGCMC 1 cut(s) 727
BseXI GCAGC 4 cut(s) 12, 881, 1450, 1593
BshFI GGCC 1 cut(s) 523
BshNI GGYRCC 1 cut(s) 1677
BsiHKAI GWGCWC 3 cut(s) 247, 727, 1149
BslFI GGGAC 2 cut(s) 747, 1372
BslI CCNNNNNNNGG 1 cut(s) 399
BsmAI GTCTC 2 cut(s) 631, 1249
BsmFI GGGAC 2 cut(s) 747, 1372
BsmI GAATGC 4 cut(s) 804, 1097, 1136, 1138
BsnI GGCC 1 cut(s) 523
Bso31I GGTCTC 1 cut(s) 631
Bsp1286I GDGCHC 4 cut(s) 247, 727, 836, 1149
Bsp1407I TGTACA 1 cut(s) 202
Bsp143I GATC 6 cut(s) 603, 649, 676, 904, 1104, 1560
BspACI CCGC 1 cut(s) 99
BspANI GGCC 1 cut(s) 523
BspCNI CTCAG 6 cut(s) 428, 628, 694, 1089, 1150, 1159
BspHI TCATGA 1 cut(s) 810
BspLI GGNNCC 2 cut(s) 906, 1679
BspMAI CTGCAG 2 cut(s) 30, 1468
BspPI GGATC 6 cut(s) 598, 671, 899, 912, 1112, 1568
BspT107I GGYRCC 1 cut(s) 1677
BspTNI GGTCTC 1 cut(s) 631
BsrGI TGTACA 1 cut(s) 202
BsrI ACTGG 5 cut(s) 629, 1437, 1517, 1562, 1590
BssECI CCNNGG 3 cut(s) 237, 297, 1287
BssMI GATC 6 cut(s) 603, 649, 676, 904, 1104, 1560
BssNAI GTATAC 1 cut(s) 1407
BssT1I CCWWGG 2 cut(s) 237, 1287
Bst1107I GTATAC 1 cut(s) 1407
Bst4CI ACNGT 1 cut(s) 693
Bst6I CTCTTC 4 cut(s) 189, 309, 629, 931
BstAUI TGTACA 1 cut(s) 202
BstC8I GCNNGC 1 cut(s) 1095
BstDEI CTNAG 9 cut(s) 89, 185, 415, 615, 681, 1076, 1141, 1158, 1167
BstEII GGTNACC 1 cut(s) 1354
BstENI CCTNNNNNAGG 1 cut(s) 397
BstF5I GGATG 2 cut(s) 524, 1412
BstKTI GATC 6 cut(s) 606, 652, 679, 907, 1107, 1563
BstMAI GTCTC 2 cut(s) 631, 1249
BstMBI GATC 6 cut(s) 603, 649, 676, 904, 1104, 1560
BstMWI GCNNNNNNNGC 4 cut(s) 302, 485, 801, 974
BstNSI RCATGY 1 cut(s) 968
BstPI GGTNACC 1 cut(s) 1354
BstSFI CTRYAG 3 cut(s) 26, 689, 1464
BstSLI GKGCMC 1 cut(s) 727
BstV1I GCAGC 4 cut(s) 12, 881, 1450, 1593
BstV2I GAAGAC 2 cut(s) 23, 1316
BstX2I RGATCY 3 cut(s) 676, 904, 1560
BstYI RGATCY 3 cut(s) 676, 904, 1560
BstZ17I GTATAC 1 cut(s) 1407
BsuI GTATCC 1 cut(s) 88
BsuRI GGCC 1 cut(s) 523
BtgZI GCGATG 1 cut(s) 758
BtsCI GGATG 2 cut(s) 524, 1412
BtsI GCAGTG 1 cut(s) 1547
BtsIMutI CAGTG 2 cut(s) 636, 1547
Cac8I GCNNGC 1 cut(s) 1095
CciI TCATGA 1 cut(s) 810
Cfr13I GGNCC 2 cut(s) 712, 947
CseI GACGC 2 cut(s) 1044, 1604
Csp6I GTAC 5 cut(s) 203, 731, 1293, 1453, 1678
CviAII CATG 8 cut(s) 191, 709, 811, 965, 1126, 1186, 1371, 1692
CviQI GTAC 5 cut(s) 203, 731, 1293, 1453, 1678
DdeI CTNAG 9 cut(s) 89, 185, 415, 615, 681, 1076, 1141, 1158, 1167
DpnI GATC 6 cut(s) 605, 651, 678, 906, 1106, 1562
DpnII GATC 6 cut(s) 603, 649, 676, 904, 1104, 1560
DriI GACNNNNNGTC 1 cut(s) 1543
EaeI YGGCCR 1 cut(s) 521
Eam1104I CTCTTC 4 cut(s) 189, 309, 629, 931
Eam1105I GACNNNNNGTC 1 cut(s) 1543
EarI CTCTTC 4 cut(s) 189, 309, 629, 931
Ecl136II GAGCTC 1 cut(s) 245
Eco130I CCWWGG 2 cut(s) 237, 1287
Eco24I GRGCYC 2 cut(s) 247, 836
Eco31I GGTCTC 1 cut(s) 631
Eco32I GATATC 1 cut(s) 943
Eco47I GGWCC 2 cut(s) 712, 947
Eco53kI GAGCTC 1 cut(s) 245
Eco57I CTGAAG 3 cut(s) 68, 194, 1553
Eco91I GGTNACC 1 cut(s) 1354
EcoICRI GAGCTC 1 cut(s) 245
EcoNI CCTNNNNNAGG 1 cut(s) 397
EcoO65I GGTNACC 1 cut(s) 1354
EcoRV GATATC 1 cut(s) 943
EcoT14I CCWWGG 2 cut(s) 237, 1287
EcoT22I ATGCAT 1 cut(s) 1138
EcoT38I GRGCYC 2 cut(s) 247, 836
ErhI CCWWGG 2 cut(s) 237, 1287
FaeI CATG 8 cut(s) 194, 712, 814, 968, 1129, 1189, 1374, 1695
FalI AAGNNNNNCTT 2 cut(s) 835, 867
FaqI GGGAC 2 cut(s) 747, 1372
FatI CATG 8 cut(s) 190, 708, 810, 964, 1125, 1185, 1370, 1691
FbaI TGATCA 1 cut(s) 649
FblI GTMKAC 2 cut(s) 256, 1406
Fnu4HI GCNGC 4 cut(s) 26, 870, 1464, 1607
FokI GGATG 2 cut(s) 511, 1399
FriOI GRGCYC 2 cut(s) 247, 836
Fsp4HI GCNGC 4 cut(s) 26, 870, 1464, 1607
FspBI CTAG 4 cut(s) 231, 293, 332, 344
GluI GCNGC 4 cut(s) 26, 870, 1464, 1607
GsuI CTGGAG 1 cut(s) 612
HaeIII GGCC 1 cut(s) 523
HgaI GACGC 2 cut(s) 1044, 1604
Hin1II CATG 8 cut(s) 194, 712, 814, 968, 1129, 1189, 1374, 1695
HincII GTYRAC 1 cut(s) 382
HindII GTYRAC 1 cut(s) 382
HindIII AAGCTT 2 cut(s) 182, 1091
HinfI GANTC 7 cut(s) 431, 448, 625, 705, 896, 1162, 1544
HphI GGTGA 2 cut(s) 103, 1348
Hpy166II GTNNAC 9 cut(s) 128, 205, 257, 382, 725, 848, 1407, 1583, 1689
Hpy8I GTNNAC 9 cut(s) 128, 205, 257, 382, 725, 848, 1407, 1583, 1689
HpyAV CCTTC 7 cut(s) 58, 352, 540, 861, 865, 1186, 1577
HpyCH4III ACNGT 1 cut(s) 693
HpyCH4IV ACGT 1 cut(s) 162
HpyF10VI GCNNNNNNNGC 4 cut(s) 302, 485, 801, 974
HpyF3I CTNAG 9 cut(s) 89, 185, 415, 615, 681, 1076, 1141, 1158, 1167
HpySE526I ACGT 1 cut(s) 162
Hsp92II CATG 8 cut(s) 194, 712, 814, 968, 1129, 1189, 1374, 1695
KpnI GGTACC 1 cut(s) 1681
Ksp22I TGATCA 1 cut(s) 649
Kzo9I GATC 6 cut(s) 603, 649, 676, 904, 1104, 1560
LmnI GCTCC 4 cut(s) 242, 286, 460, 1047
Lsp1109I GCAGC 4 cut(s) 12, 881, 1450, 1593
LweI GCATC 1 cut(s) 1421
MaeI CTAG 4 cut(s) 231, 293, 332, 344
MaeII ACGT 1 cut(s) 162
MaeIII GTNAC 2 cut(s) 1354, 1545
MalI GATC 6 cut(s) 605, 651, 678, 906, 1106, 1562
MboI GATC 6 cut(s) 603, 649, 676, 904, 1104, 1560
MfeI CAATTG 2 cut(s) 645, 969
MflI RGATCY 3 cut(s) 676, 904, 1560
MhlI GDGCHC 4 cut(s) 247, 727, 836, 1149
MlsI TGGCCA 1 cut(s) 523
MluNI TGGCCA 1 cut(s) 523
MlyI GAGTC 4 cut(s) 619, 714, 1171, 1553
MmeI TCCRAC 2 cut(s) 1189, 1450
Mox20I TGGCCA 1 cut(s) 523
Mph1103I ATGCAT 1 cut(s) 1138
MroXI GAANNNNTTC 3 cut(s) 783, 820, 1136
MscI TGGCCA 1 cut(s) 523
MseI TTAA 3 cut(s) 987, 1223, 1602
MslI CAYNNNNRTG 3 cut(s) 809, 815, 1369
Msp20I TGGCCA 1 cut(s) 523
MspA1I CMGCKG 1 cut(s) 419
MunI CAATTG 2 cut(s) 645, 969
Mva1269I GAATGC 4 cut(s) 804, 1097, 1136, 1138
MwoI GCNNNNNNNGC 4 cut(s) 302, 485, 801, 974
NdeII GATC 6 cut(s) 603, 649, 676, 904, 1104, 1560
NlaIII CATG 8 cut(s) 194, 712, 814, 968, 1129, 1189, 1374, 1695
NlaIV GGNNCC 2 cut(s) 906, 1679
NmeAIII GCCGAG 1 cut(s) 322
NmuCI GTSAC 2 cut(s) 1354, 1545
NsiI ATGCAT 1 cut(s) 1138
NspI RCATGY 1 cut(s) 968
PagI TCATGA 1 cut(s) 810
PctI GAATGC 4 cut(s) 804, 1097, 1136, 1138
PdmI GAANNNNTTC 3 cut(s) 783, 820, 1136
PfeI GAWTC 3 cut(s) 431, 448, 896
PkrI GCNGC 4 cut(s) 27, 871, 1465, 1608
PleI GAGTC 4 cut(s) 619, 713, 1170, 1552
PpsI GAGTC 4 cut(s) 619, 713, 1170, 1552
PshBI ATTAAT 1 cut(s) 987
Psp124BI GAGCTC 1 cut(s) 247
PspEI GGTNACC 1 cut(s) 1354
PspN4I GGNNCC 2 cut(s) 906, 1679
PspPI GGNCC 2 cut(s) 712, 947
PstI CTGCAG 2 cut(s) 30, 1468
PsuI RGATCY 3 cut(s) 676, 904, 1560
PvuII CAGCTG 1 cut(s) 419
RsaI GTAC 5 cut(s) 204, 732, 1294, 1454, 1679
RsaNI GTAC 5 cut(s) 203, 731, 1293, 1453, 1678
RseI CAYNNNNRTG 3 cut(s) 809, 815, 1369
SacI GAGCTC 1 cut(s) 247
SaqAI TTAA 3 cut(s) 987, 1223, 1602
SatI GCNGC 4 cut(s) 26, 870, 1464, 1607
Sau3AI GATC 6 cut(s) 603, 649, 676, 904, 1104, 1560
Sau96I GGNCC 2 cut(s) 712, 947
ScaI AGTACT 1 cut(s) 1454
SchI GAGTC 4 cut(s) 619, 714, 1171, 1553
SduI GDGCHC 4 cut(s) 247, 727, 836, 1149
SfaNI GCATC 1 cut(s) 1421
SfcI CTRYAG 3 cut(s) 26, 689, 1464
SinI GGWCC 2 cut(s) 712, 947
SmiMI CAYNNNNRTG 3 cut(s) 809, 815, 1369
SmlI CTYRAG 3 cut(s) 474, 873, 1252
SmoI CTYRAG 3 cut(s) 474, 873, 1252
SsiI CCGC 1 cut(s) 99
SspMI CTAG 4 cut(s) 231, 293, 332, 344
SstI GAGCTC 1 cut(s) 247
StyI CCWWGG 2 cut(s) 237, 1287
TaaI ACNGT 1 cut(s) 693
TaiI ACGT 1 cut(s) 165
TaqI TCGA 1 cut(s) 497
TaqII GACCGA 1 cut(s) 935
TatI WGTACW 2 cut(s) 202, 1452
TfiI GAWTC 3 cut(s) 431, 448, 896
Tru1I TTAA 3 cut(s) 987, 1223, 1602
Tru9I TTAA 3 cut(s) 987, 1223, 1602
TscAI CASTG 2 cut(s) 636, 1554
TseFI GTSAC 2 cut(s) 1354, 1545
TseI GCWGC 4 cut(s) 25, 869, 1463, 1606
Tsp45I GTSAC 2 cut(s) 1354, 1545
TspDTI ATGAA 9 cut(s) 17, 50, 207, 423, 771, 900, 1145, 1443, 1467
TspGWI ACGGA 2 cut(s) 145, 1164
TspRI CASTG 2 cut(s) 636, 1554
VneI GTGCAC 1 cut(s) 723
VpaK11BI GGWCC 2 cut(s) 712, 947
VspI ATTAAT 1 cut(s) 987
XagI CCTNNNNNAGG 1 cut(s) 397
XapI RAATTY 5 cut(s) 771, 926, 1063, 1473, 1487
XceI RCATGY 1 cut(s) 968
XcmI CCANNNNNNNNNTGG 2 cut(s) 403, 897
XmiI GTMKAC 2 cut(s) 256, 1406
XmnI GAANNNNTTC 3 cut(s) 783, 820, 1136
XspI CTAG 4 cut(s) 231, 293, 332, 344
ZrmI AGTACT 1 cut(s) 1454
Zsp2I ATGCAT 1 cut(s) 1138
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.