Rorug06G0355700

isoform X1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0003187
Physical Location & Seq
Reverse (-)
50313967 .. 50314740
774 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0355700.1

Sequence Viewer

Length: 774 bp
ATGGAGCTACAAACCCCGCAACAAATCGAGGATGGAGGAAACAACCAAGCAGCCGGGAGTAGTGCCAACACAGATTTCTGGCGAAGCCGTGCCAGGTGGGTTCCTACTCCAGATCAAATAAGGATCCTCAAGGATCTTTACTACGACAAGGGAGTTAAGTGCCCAACTACAGAGCACATTCACGAGATCTGTCTCCAGCTGAACCAGTATGGACATGTTGAGGGCAAGAACATTTATTTTTGGTTCCAGAATGTCAGGGCTCGAGAGAAGCAGATGAAGAGGTGCAATCAGGCTGCTCAAGTGCCCATGGGAACTAGTTCTCCTGGTACTGGTGGATCCATTGATCTCAATTTTGGGTCCACTGGTTCTACTGGTGCTGGTGGATCCATCGACATCAATTTTGGGCCAGCTGGTGGATCCATTGACATCAATTTTGGGTCCACTAGTTCTACTGATGATGGTAGATCCATTAATCTCAACTTTGGTTCCACCGATTCTACTGGTAATGAAGGATTTCTTGATTTAAATTTTGTTTCATATTCTTCCTCACACTTCAACACTAATACCAGTACAACTCTTTTGGCACAACAGGAGGACAAACATCCCTGCAACAACGAGGAGGAGATTGAAACCCTTCCATTGTTCCCCATGCCTGGTGAGGACATATTTGGCAACATGAAGACTACTTCCGAGGGAGGTAGCGGTTATGGCGGTGGCTCTCGCATTTCCCTTGAGCTCAGTCTCAACTCCTCCGGAGCTGCTGATTTGGCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF547 Lzipper-MIP1

Protein Analysis

257

Amino Acids

27.61

Weight (kDa)

4.7

Isoelectric Point (pI)

43.77

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Homeodomain PF00046 30 - 91 3e-09 Homeodomain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 413
AccIII TCCGGA 1 cut(s) 752
AciI CCGC 3 cut(s) 17, 702, 711
AcsI RAATTY 1 cut(s) 526
AfaI GTAC 2 cut(s) 328, 571
AfiI CCNNNNNNNGG 3 cut(s) 329, 413, 653
AflIII ACRYGT 1 cut(s) 214
AgsI TTSAA 2 cut(s) 556, 629
AhlI ACTAGT 2 cut(s) 314, 443
AjnI CCWGG 3 cut(s) 92, 322, 652
AjuI GAANNNNNNNTTGG 2 cut(s) 59, 91
AloI GAACNNNNNNTCC 2 cut(s) 304, 336
AluBI AGCT 5 cut(s) 7, 199, 410, 736, 758
AluI AGCT 5 cut(s) 7, 199, 410, 736, 758
Alw21I GWGCWC 2 cut(s) 177, 738
Alw26I GTCTC 2 cut(s) 197, 746
Ama87I CYCGRG 1 cut(s) 261
Aor13HI TCCGGA 1 cut(s) 752
AoxI GGCC 1 cut(s) 404
ApeKI GCWGC 3 cut(s) 50, 293, 758
ApoI RAATTY 1 cut(s) 526
ArsI GACNNNNNNTTYG 4 cut(s) 383, 415, 416, 448
AseI ATTAAT 1 cut(s) 471
Asp700I GAANNNNTTC 3 cut(s) 316, 513, 633
AspS9I GGNCC 3 cut(s) 357, 404, 438
AsuC2I CCSGG 1 cut(s) 55
AsuHPI GGTGA 1 cut(s) 668
AvaI CYCGRG 1 cut(s) 261
AvaII GGWCC 2 cut(s) 357, 438
BaeGI GKGCMC 2 cut(s) 164, 306
BamHI GGATCC 4 cut(s) 123, 335, 383, 416
BanII GRGCYC 2 cut(s) 262, 738
BauI CACGAG 1 cut(s) 182
BbsI GAAGAC 1 cut(s) 686
Bbv12I GWGCWC 2 cut(s) 177, 738
BbvI GCAGC 3 cut(s) 62, 280, 745
BccI CCATC 3 cut(s) 26, 395, 452
BceAI ACGGC 1 cut(s) 72
BciT130I CCWGG 3 cut(s) 94, 324, 654
BcnI CCSGG 1 cut(s) 55
BcoDI GTCTC 2 cut(s) 197, 746
BcuI ACTAGT 2 cut(s) 314, 443
BfaI CTAG 2 cut(s) 315, 444
BfmI CTRYAG 1 cut(s) 168
BglII AGATCT 1 cut(s) 186
BisI GCNGC 3 cut(s) 51, 294, 759
BlsI GCNGC 3 cut(s) 52, 295, 760
Bme1390I CCNGG 4 cut(s) 55, 94, 324, 654
Bme18I GGWCC 2 cut(s) 357, 438
BmeT110I CYCGRG 1 cut(s) 261
BmgT120I GGNCC 3 cut(s) 357, 404, 438
BmiI GGNNCC 9 cut(s) 102, 125, 245, 337, 358, 385, 418, 439, 487
BmrFI CCNGG 4 cut(s) 55, 94, 324, 654
BpiI GAAGAC 1 cut(s) 686
BpmI CTGGAG 2 cut(s) 93, 179
BpuEI CTTGAG 3 cut(s) 113, 282, 752
BpuMI CCSGG 1 cut(s) 55
BsaJI CCNNGG 2 cut(s) 306, 690
BsaWI WCCGGW 1 cut(s) 752
BsaXI ACNNNNNCTCC 2 cut(s) 304, 334
Bsc4I CCNNNNNNNGG 3 cut(s) 329, 413, 653
Bse1I ACTGG 6 cut(s) 205, 334, 367, 376, 505, 567
BseAI TCCGGA 1 cut(s) 752
BseBI CCWGG 3 cut(s) 94, 324, 654
BseDI CCNNGG 2 cut(s) 306, 690
BseGI GGATG 2 cut(s) 37, 601
BseLI CCNNNNNNNGG 3 cut(s) 329, 413, 653
BseMII CTCAG 1 cut(s) 751
BseNI ACTGG 6 cut(s) 205, 334, 367, 376, 505, 567
BseRI GAGGAG 3 cut(s) 632, 635, 739
BseSI GKGCMC 2 cut(s) 164, 306
BseXI GCAGC 3 cut(s) 62, 280, 745
BshFI GGCC 1 cut(s) 406
BsiHKAI GWGCWC 2 cut(s) 177, 738
BsiHKCI CYCGRG 1 cut(s) 261
BsiSI CCGG 2 cut(s) 54, 753
BslI CCNNNNNNNGG 3 cut(s) 329, 413, 653
BsmAI GTCTC 2 cut(s) 197, 746
BsnI GGCC 1 cut(s) 406
BsoBI CYCGRG 1 cut(s) 261
Bsp1286I GDGCHC 5 cut(s) 164, 177, 262, 306, 738
Bsp13I TCCGGA 1 cut(s) 752
Bsp143I GATC 9 cut(s) 112, 123, 133, 186, 335, 343, 383, 416, 464
Bsp19I CCATGG 1 cut(s) 306
BspACI CCGC 3 cut(s) 17, 702, 711
BspANI GGCC 1 cut(s) 406
BspCNI CTCAG 1 cut(s) 750
BspEI TCCGGA 1 cut(s) 752
BspLI GGNNCC 9 cut(s) 102, 125, 245, 337, 358, 385, 418, 439, 487
BsrI ACTGG 6 cut(s) 205, 334, 367, 376, 505, 567
BssECI CCNNGG 2 cut(s) 306, 690
BssMI GATC 9 cut(s) 112, 123, 133, 186, 335, 343, 383, 416, 464
BssSI CACGAG 1 cut(s) 182
BssT1I CCWWGG 1 cut(s) 306
Bst2BI CACGAG 1 cut(s) 182
Bst2UI CCWGG 3 cut(s) 94, 324, 654
Bst6I CTCTTC 1 cut(s) 272
BstC8I GCNNGC 1 cut(s) 408
BstDEI CTNAG 1 cut(s) 737
BstDSI CCRYGG 1 cut(s) 306
BstF5I GGATG 2 cut(s) 37, 601
BstKTI GATC 9 cut(s) 115, 126, 136, 189, 338, 346, 386, 419, 467
BstMAI GTCTC 2 cut(s) 197, 746
BstMBI GATC 9 cut(s) 112, 123, 133, 186, 335, 343, 383, 416, 464
BstMWI GCNNNNNNNGC 2 cut(s) 708, 767
BstNI CCWGG 3 cut(s) 94, 324, 654
BstNSI RCATGY 1 cut(s) 218
BstSCI CCNGG 4 cut(s) 53, 92, 322, 652
BstSFI CTRYAG 1 cut(s) 168
BstSLI GKGCMC 2 cut(s) 164, 306
BstV1I GCAGC 3 cut(s) 62, 280, 745
BstV2I GAAGAC 1 cut(s) 686
BstX2I RGATCY 7 cut(s) 123, 133, 186, 335, 383, 416, 464
BstYI RGATCY 7 cut(s) 123, 133, 186, 335, 383, 416, 464
BsuRI GGCC 1 cut(s) 406
BtgI CCRYGG 1 cut(s) 306
BtsCI GGATG 2 cut(s) 37, 601
BtsIMutI CAGTG 1 cut(s) 360
Cac8I GCNNGC 1 cut(s) 408
Cfr13I GGNCC 3 cut(s) 357, 404, 438
Csp6I GTAC 2 cut(s) 327, 570
CviAII CATG 4 cut(s) 215, 307, 649, 676
CviQI GTAC 2 cut(s) 327, 570
DdeI CTNAG 1 cut(s) 737
DpnI GATC 9 cut(s) 114, 125, 135, 188, 337, 345, 385, 418, 466
DpnII GATC 9 cut(s) 112, 123, 133, 186, 335, 343, 383, 416, 464
DraI TTTAAA 1 cut(s) 525
Eam1104I CTCTTC 1 cut(s) 272
EarI CTCTTC 1 cut(s) 272
Ecl136II GAGCTC 1 cut(s) 736
Eco130I CCWWGG 1 cut(s) 306
Eco24I GRGCYC 2 cut(s) 262, 738
Eco47I GGWCC 2 cut(s) 357, 438
Eco53kI GAGCTC 1 cut(s) 736
Eco88I CYCGRG 1 cut(s) 261
EcoICRI GAGCTC 1 cut(s) 736
EcoRII CCWGG 3 cut(s) 92, 322, 652
EcoT14I CCWWGG 1 cut(s) 306
EcoT38I GRGCYC 2 cut(s) 262, 738
ErhI CCWWGG 1 cut(s) 306
FaeI CATG 4 cut(s) 218, 310, 652, 679
FaiI YATR 9 cut(s) 210, 216, 308, 538, 650, 665, 677, 708, 772
FalI AAGNNNNNCTT 2 cut(s) 501, 533
FatI CATG 4 cut(s) 214, 306, 648, 675
FauI CCCGC 1 cut(s) 24
Fnu4HI GCNGC 3 cut(s) 51, 294, 759
FokI GGATG 2 cut(s) 44, 588
FriOI GRGCYC 2 cut(s) 262, 738
Fsp4HI GCNGC 3 cut(s) 51, 294, 759
FspBI CTAG 2 cut(s) 315, 444
GluI GCNGC 3 cut(s) 51, 294, 759
GsuI CTGGAG 2 cut(s) 93, 179
HaeIII GGCC 1 cut(s) 406
HapII CCGG 2 cut(s) 54, 753
Hin1II CATG 4 cut(s) 218, 310, 652, 679
HinfI GANTC 1 cut(s) 494
HpaII CCGG 2 cut(s) 54, 753
HphI GGTGA 1 cut(s) 668
Hpy166II GTNNAC 2 cut(s) 360, 441
Hpy188I TCNGA 1 cut(s) 691
Hpy188III TCNNGA 6 cut(s) 110, 182, 247, 263, 518, 753
Hpy8I GTNNAC 2 cut(s) 360, 441
HpyAV CCTTC 2 cut(s) 503, 644
HpyCH4V TGCA 2 cut(s) 285, 609
HpyF10VI GCNNNNNNNGC 2 cut(s) 708, 767
HpyF3I CTNAG 1 cut(s) 737
Hsp92II CATG 4 cut(s) 218, 310, 652, 679
Kpn2I TCCGGA 1 cut(s) 752
Kzo9I GATC 9 cut(s) 112, 123, 133, 186, 335, 343, 383, 416, 464
LmnI GCTCC 2 cut(s) 4, 755
Lsp1109I GCAGC 3 cut(s) 62, 280, 745
MaeI CTAG 2 cut(s) 315, 444
MalI GATC 9 cut(s) 114, 125, 135, 188, 337, 345, 385, 418, 466
MboI GATC 9 cut(s) 112, 123, 133, 186, 335, 343, 383, 416, 464
MboII GAAGA 3 cut(s) 289, 534, 691
MflI RGATCY 7 cut(s) 123, 133, 186, 335, 383, 416, 464
MhlI GDGCHC 5 cut(s) 164, 177, 262, 306, 738
MluCI AATT 4 cut(s) 349, 397, 430, 526
MroI TCCGGA 1 cut(s) 752
MroXI GAANNNNTTC 3 cut(s) 316, 513, 633
MseI TTAA 3 cut(s) 156, 471, 524
MspA1I CMGCKG 2 cut(s) 199, 410
MspI CCGG 2 cut(s) 54, 753
MspR9I CCNGG 4 cut(s) 55, 94, 324, 654
MvaI CCWGG 3 cut(s) 94, 324, 654
MwoI GCNNNNNNNGC 2 cut(s) 708, 767
NciI CCSGG 1 cut(s) 55
NcoI CCATGG 1 cut(s) 306
NdeII GATC 9 cut(s) 112, 123, 133, 186, 335, 343, 383, 416, 464
NlaIII CATG 4 cut(s) 218, 310, 652, 679
NlaIV GGNNCC 9 cut(s) 102, 125, 245, 337, 358, 385, 418, 439, 487
NspI RCATGY 1 cut(s) 218
PaeR7I CTCGAG 1 cut(s) 261
PciI ACATGT 1 cut(s) 214
PdmI GAANNNNTTC 3 cut(s) 316, 513, 633
PfeI GAWTC 1 cut(s) 494
PflMI CCANNNNNTGG 1 cut(s) 413
PkrI GCNGC 3 cut(s) 52, 295, 760
PscI ACATGT 1 cut(s) 214
PshBI ATTAAT 1 cut(s) 471
Psp124BI GAGCTC 1 cut(s) 738
Psp6I CCWGG 3 cut(s) 92, 322, 652
PspGI CCWGG 3 cut(s) 92, 322, 652
PspN4I GGNNCC 9 cut(s) 102, 125, 245, 337, 358, 385, 418, 439, 487
PspPI GGNCC 3 cut(s) 357, 404, 438
PsuI RGATCY 7 cut(s) 123, 133, 186, 335, 383, 416, 464
PvuII CAGCTG 2 cut(s) 199, 410
RsaI GTAC 2 cut(s) 328, 571
RsaNI GTAC 2 cut(s) 327, 570
SacI GAGCTC 1 cut(s) 738
SaqAI TTAA 3 cut(s) 156, 471, 524
SatI GCNGC 3 cut(s) 51, 294, 759
Sau3AI GATC 9 cut(s) 112, 123, 133, 186, 335, 343, 383, 416, 464
Sau96I GGNCC 3 cut(s) 357, 404, 438
ScrFI CCNGG 4 cut(s) 55, 94, 324, 654
SduI GDGCHC 5 cut(s) 164, 177, 262, 306, 738
SetI ASST 8 cut(s) 9, 98, 201, 284, 412, 700, 738, 760
SfcI CTRYAG 1 cut(s) 168
Sfr274I CTCGAG 1 cut(s) 261
SinI GGWCC 2 cut(s) 357, 438
SlaI CTCGAG 1 cut(s) 261
SmiI ATTTAAAT 1 cut(s) 525
SmlI CTYRAG 4 cut(s) 128, 261, 297, 731
SmoI CTYRAG 4 cut(s) 128, 261, 297, 731
SpeI ACTAGT 2 cut(s) 314, 443
Sse9I AATT 4 cut(s) 349, 397, 430, 526
SsiI CCGC 3 cut(s) 17, 702, 711
SspMI CTAG 2 cut(s) 315, 444
SstI GAGCTC 1 cut(s) 738
StyD4I CCNGG 4 cut(s) 53, 92, 322, 652
StyI CCWWGG 1 cut(s) 306
SwaI ATTTAAAT 1 cut(s) 525
TaqI TCGA 3 cut(s) 27, 262, 390
TasI AATT 4 cut(s) 349, 397, 430, 526
TatI WGTACW 1 cut(s) 569
TfiI GAWTC 1 cut(s) 494
Tru1I TTAA 3 cut(s) 156, 471, 524
Tru9I TTAA 3 cut(s) 156, 471, 524
TscAI CASTG 1 cut(s) 367
TseI GCWGC 3 cut(s) 50, 293, 758
TspDTI ATGAA 4 cut(s) 290, 522, 525, 692
TspRI CASTG 1 cut(s) 367
Van91I CCANNNNNTGG 1 cut(s) 413
VpaK11BI GGWCC 2 cut(s) 357, 438
VspI ATTAAT 1 cut(s) 471
XapI RAATTY 1 cut(s) 526
XceI RCATGY 1 cut(s) 218
XhoI CTCGAG 1 cut(s) 261
XmnI GAANNNNTTC 3 cut(s) 316, 513, 633
XspI CTAG 2 cut(s) 315, 444
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.