Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr8

Orthogroup ID

OG0003187

Physical Location & Seq

Genomic Coordinates Forward (+)

7146547 .. 7147555

Gene Structure 1009 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom08g08840.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 570 bp

ATGATGAATGCTTTCCTCGAGCACGGCATACCTGAGAGTCCCAAGATAATTGTAGCCCTAATGCAGAAGGCAACAATAAATGTTGGAGGACACATCCTGAATGCAATAACTATTGAACATTTCATCTTGAGACTGCCGTATCACTCAAAACATACCTTCTCTAAGGGCACAAAAACTGACGAGAAGACGGCAAGAAGTACTTTTGGATTGGAATTATCCGAACCATTGGTAACATTTGCACTATCATGTGGCAGCTGGTCTTCCCCTGCGGTGAAAGTGTACACTGCATCCCAAGTTGAGAATGAACTGGAAGTTGCAAAAATAGAGTACTTGCAAGCTGCAGTTGAAATTTCATCAGATAAGGTTGCAATTCCAAAGATATTGGATTGGTATTTACTTGATTTTGCTAAGGATTTGGAGTCTTTGCTTGATTGGATCTGCCTTCAGCTCCCAAGTGAAGTGGGAAAAGAAGCACTCAAGCTTCTTGAAAGAGGGAAAAATGAGCCTCTTTCACAATTTGTCCAAGTTACGCCCTATGAGTTTAATTTTAGGTACCTTCTATACAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF547 Lzipper-MIP1

Protein Analysis

190

Amino Acids

21.35

Weight (kDa)

5.76

Isoelectric Point (pI)

37.76

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0003187)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G42690 AT5G42690 AT5G42690 AT5G42690 AT5G42690
fragaria_vesca	FvH4_2g34930 FvH4_2g34930 FvH4_2g34930 FvH4_2g34930 FvH4_2g34930 FvH4_2g34930 FvH4_2g34930 FvH4_2g34930 FvH4_2g34930 FvH4_2g34930 FvH4_2g34930
malus_domestica	MD08G1106800.v1.1 MD15G1087500.v1.1
prunus_persica	Prupe.1G441200_v2.0.a1 Prupe.1G441200_v2.0.a1 Prupe.1G441200_v2.0.a1 Prupe.1G441200_v2.0.a1
pyrus_communis	pycom08g08840 pycom15g08230
rosa_chinensis	RchiOBHm_Chr6g0307071
rosa_laevigata	RLG00000010736
rosa_multiflora	Rmu_sc0005634.1_g000003
rosa_roxburghii	Rroxscaffold_7G00161180
rosa_rugosa	Rorug06G0355700 Rorug06G0355800 Rorug06G0355900 Rorug06G0356000
rosa_samantha	Rh6AG467200 Rh6BG433300 Rh6CG482700 Rh6DG469000
rosa_wichuraiana	Rw6G040730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	552
AccB1I	GGYRCC	1 cut(s)	552
AciI	CCGC	1 cut(s)	269
AclWI	GGATC	1 cut(s)	443
AcsI	RAATTY	1 cut(s)	348
AcuI	CTGAAG	1 cut(s)	428
AfaI	GTAC	4 cut(s)	199, 281, 329, 554
AgsI	TTSAA	3 cut(s)	116, 347, 488
AluBI	AGCT	4 cut(s)	255, 338, 448, 481
AluI	AGCT	4 cut(s)	255, 338, 448, 481
Alw21I	GWGCWC	1 cut(s)	24
Alw26I	GTCTC	1 cut(s)	124
AlwI	GGATC	1 cut(s)	443
Ama87I	CYCGRG	1 cut(s)	17
ApeKI	GCWGC	2 cut(s)	252, 338
ApoI	RAATTY	1 cut(s)	348
Asp700I	GAANNNNTTC	1 cut(s)	11
Asp718I	GGTACC	1 cut(s)	552
AsuHPI	GGTGA	1 cut(s)	283
AvaI	CYCGRG	1 cut(s)	17
BaeGI	GKGCMC	1 cut(s)	170
BaeI	ACNNNNGTAYC	2 cut(s)	122, 155
BanI	GGYRCC	1 cut(s)	552
BbsI	GAAGAC	2 cut(s)	191, 252
Bbv12I	GWGCWC	1 cut(s)	24
BbvI	GCAGC	2 cut(s)	264, 325
BceAI	ACGGC	3 cut(s)	40, 121, 204
BcoDI	GTCTC	1 cut(s)	124
BfmI	CTRYAG	1 cut(s)	339
BisI	GCNGC	2 cut(s)	253, 339
BlsI	GCNGC	2 cut(s)	254, 340
BmcAI	AGTACT	2 cut(s)	199, 329
BmeT110I	CYCGRG	1 cut(s)	17
BmiI	GGNNCC	1 cut(s)	554
BmsI	GCATC	1 cut(s)	296
BpiI	GAAGAC	2 cut(s)	191, 252
Bpu10I	CCTNAGC	1 cut(s)	408
BpuEI	CTTGAG	2 cut(s)	148, 461
Bse1I	ACTGG	1 cut(s)	312
BseGI	GGATG	2 cut(s)	93, 287
BseMII	CTCAG	1 cut(s)	24
BseNI	ACTGG	1 cut(s)	312
BseSI	GKGCMC	1 cut(s)	170
BseXI	GCAGC	2 cut(s)	264, 325
BshNI	GGYRCC	1 cut(s)	552
BsiHKAI	GWGCWC	1 cut(s)	24
BsiHKCI	CYCGRG	1 cut(s)	17
BslFI	GGGAC	1 cut(s)	24
BsmAI	GTCTC	1 cut(s)	124
BsmFI	GGGAC	1 cut(s)	24
BsmI	GAATGC	2 cut(s)	13, 106
BsoBI	CYCGRG	1 cut(s)	17
Bsp1286I	GDGCHC	2 cut(s)	24, 170
Bsp1407I	TGTACA	1 cut(s)	279
Bsp143I	GATC	1 cut(s)	435
BspACI	CCGC	1 cut(s)	269
BspCNI	CTCAG	1 cut(s)	25
BspLI	GGNNCC	1 cut(s)	554
BspMAI	CTGCAG	1 cut(s)	343
BspPI	GGATC	1 cut(s)	443
BspT107I	GGYRCC	1 cut(s)	552
BsrGI	TGTACA	1 cut(s)	279
BsrI	ACTGG	1 cut(s)	312
BssMI	GATC	1 cut(s)	435
BstAUI	TGTACA	1 cut(s)	279
BstC8I	GCNNGC	1 cut(s)	336
BstDEI	CTNAG	3 cut(s)	33, 162, 408
BstF5I	GGATG	2 cut(s)	93, 287
BstKTI	GATC	1 cut(s)	438
BstMAI	GTCTC	1 cut(s)	124
BstMBI	GATC	1 cut(s)	435
BstSFI	CTRYAG	1 cut(s)	339
BstSLI	GKGCMC	1 cut(s)	170
BstV1I	GCAGC	2 cut(s)	264, 325
BstV2I	GAAGAC	2 cut(s)	191, 252
BstX2I	RGATCY	1 cut(s)	435
BstYI	RGATCY	1 cut(s)	435
BtsCI	GGATG	2 cut(s)	93, 287
BtsI	GCAGTG	1 cut(s)	282
BtsIMutI	CAGTG	1 cut(s)	282
Cac8I	GCNNGC	1 cut(s)	336
Csp6I	GTAC	4 cut(s)	198, 280, 328, 553
CspCI	CAANNNNNGTGG	2 cut(s)	441, 476
CviAII	CATG	1 cut(s)	246
CviJI	RGCY	6 cut(s)	56, 255, 338, 448, 481, 505
CviKI_1	RGCY	6 cut(s)	56, 255, 338, 448, 481, 505
CviQI	GTAC	4 cut(s)	198, 280, 328, 553
DdeI	CTNAG	3 cut(s)	33, 162, 408
DpnI	GATC	1 cut(s)	437
DpnII	GATC	1 cut(s)	435
Eco57I	CTGAAG	1 cut(s)	428
Eco88I	CYCGRG	1 cut(s)	17
FaeI	CATG	1 cut(s)	249
FaiI	YATR	5 cut(s)	29, 153, 247, 537, 562
FalI	AAGNNNNNCTT	2 cut(s)	184, 216
FaqI	GGGAC	1 cut(s)	24
FatI	CATG	1 cut(s)	245
Fnu4HI	GCNGC	2 cut(s)	253, 339
FokI	GGATG	2 cut(s)	80, 274
Fsp4HI	GCNGC	2 cut(s)	253, 339
GluI	GCNGC	2 cut(s)	253, 339
Hin1II	CATG	1 cut(s)	249
HindIII	AAGCTT	1 cut(s)	479
HinfI	GANTC	2 cut(s)	37, 419
HphI	GGTGA	1 cut(s)	283
Hpy166II	GTNNAC	2 cut(s)	280, 282
Hpy188I	TCNGA	2 cut(s)	220, 358
Hpy188III	TCNNGA	3 cut(s)	97, 127, 485
Hpy8I	GTNNAC	2 cut(s)	280, 282
HpyAV	CCTTC	4 cut(s)	61, 166, 452, 566
HpyCH4V	TGCA	8 cut(s)	64, 104, 239, 287, 317, 334, 341, 368
HpyF3I	CTNAG	3 cut(s)	33, 162, 408
Hsp92II	CATG	1 cut(s)	249
KpnI	GGTACC	1 cut(s)	556
Kzo9I	GATC	1 cut(s)	435
LmnI	GCTCC	1 cut(s)	453
LpnPI	CCDG	5 cut(s)	45, 110, 241, 279, 293
Lsp1109I	GCAGC	2 cut(s)	264, 325
LweI	GCATC	1 cut(s)	296
MaeIII	GTNAC	2 cut(s)	229, 526
MalI	GATC	1 cut(s)	437
MboI	GATC	1 cut(s)	435
MboII	GAAGA	2 cut(s)	196, 252
MflI	RGATCY	1 cut(s)	435
MhlI	GDGCHC	2 cut(s)	24, 170
MluCI	AATT	6 cut(s)	48, 212, 348, 369, 515, 544
MlyI	GAGTC	2 cut(s)	46, 428
MmeI	TCCRAC	1 cut(s)	64
MnlI	CCTC	4 cut(s)	26, 80, 485, 516
MroXI	GAANNNNTTC	1 cut(s)	11
MseI	TTAA	1 cut(s)	543
MslI	CAYNNNNRTG	1 cut(s)	244
MspA1I	CMGCKG	1 cut(s)	255
Mva1269I	GAATGC	2 cut(s)	13, 106
NdeII	GATC	1 cut(s)	435
NlaIII	CATG	1 cut(s)	249
NlaIV	GGNNCC	1 cut(s)	554
PaeR7I	CTCGAG	1 cut(s)	17
PctI	GAATGC	2 cut(s)	13, 106
PdmI	GAANNNNTTC	1 cut(s)	11
PkrI	GCNGC	2 cut(s)	254, 340
PleI	GAGTC	2 cut(s)	45, 427
PpsI	GAGTC	2 cut(s)	45, 427
PspN4I	GGNNCC	1 cut(s)	554
PspXI	VCTCGAGB	1 cut(s)	17
PstI	CTGCAG	1 cut(s)	343
PsuI	RGATCY	1 cut(s)	435
PvuII	CAGCTG	1 cut(s)	255
RsaI	GTAC	4 cut(s)	199, 281, 329, 554
RsaNI	GTAC	4 cut(s)	198, 280, 328, 553
RseI	CAYNNNNRTG	1 cut(s)	244
SaqAI	TTAA	1 cut(s)	543
SatI	GCNGC	2 cut(s)	253, 339
Sau3AI	GATC	1 cut(s)	435
ScaI	AGTACT	2 cut(s)	199, 329
SchI	GAGTC	2 cut(s)	46, 428
SduI	GDGCHC	2 cut(s)	24, 170
SetI	ASST	9 cut(s)	34, 158, 257, 340, 366, 450, 483, 554, 558
SfaNI	GCATC	1 cut(s)	296
SfcI	CTRYAG	1 cut(s)	339
Sfr274I	CTCGAG	1 cut(s)	17
SlaI	CTCGAG	1 cut(s)	17
SmiMI	CAYNNNNRTG	1 cut(s)	244
SmlI	CTYRAG	3 cut(s)	17, 127, 476
SmoI	CTYRAG	3 cut(s)	17, 127, 476
Sse9I	AATT	6 cut(s)	48, 212, 348, 369, 515, 544
SsiI	CCGC	1 cut(s)	269
TaqI	TCGA	1 cut(s)	18
TasI	AATT	6 cut(s)	48, 212, 348, 369, 515, 544
TatI	WGTACW	3 cut(s)	197, 279, 327
Tru1I	TTAA	1 cut(s)	543
Tru9I	TTAA	1 cut(s)	543
TscAI	CASTG	1 cut(s)	289
TseI	GCWGC	2 cut(s)	252, 338
TspDTI	ATGAA	4 cut(s)	20, 112, 318, 342
TspRI	CASTG	1 cut(s)	289
XapI	RAATTY	1 cut(s)	348
XhoI	CTCGAG	1 cut(s)	17
XmnI	GAANNNNTTC	1 cut(s)	11
ZrmI	AGTACT	2 cut(s)	199, 329

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.