MD15G1087500.v1.1

isoform X1

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr15
Physical Location & Seq
Forward (+)
6086944 .. 6091210
4267 bp
Loading structure...
UTR
Exon/CDS
Intron
MD15G1087500.v1.1.491

Sequence Viewer

Length: 1623 bp
ATGAAGCCACCTGAGAAGAATCAAAAGGAACGGGTAGAAATGAAAGGGGGTAAGATTACAGATACCAGAAAAGTAATCAGCAATGGAAGAGCTTCGAGCAGAGAGAGAAAATTTGCTTTACAACAAGATGTTGATAAGTTGAAGAAGAAGCTTAGACATGAAGAGAATGTACGCAGAGCTTTGCAGAGGGCATTTACAAGACCCTTAGGAGCTCTGCCTCGTCTTCCTCCTTATCTGCCTCCTTATACATTAGAGCTTCTAGCAGAAGTGGCGGTTTTGGAAGAGGAGGTGGTTCGGCTCGAAGAACAGGTAGTGCATTTTAGGAAGGACTTGTATCAGGAAGCTGTATACATTTCAAACTCCAAGAGGAAAATGGAAACATTCTCAGCTGTTTCATCTGATTCGTACCCGATAAAGAATCCCAAATTTCAATCTCAAAGAGGAAACAATTCTACCAATTCCACTGAAAAGGATTGTCCATCCCCTTATGTTTCAGATGATAAGCAGGGAAAAGAGAACCAATCATATAATAACATTACGAAGAGCAATGAGAGAGCCTTGATCCATAAAGGTCAGGTTAGGACTCCAGTGAAGAGACCTCCAATCGATCACAGAGCTGCAGAAAAGCGTTTAGAGCCTCAGAAACTACAGTTTGAAACTAGAACTGCGGATCAAGAAAGTGCGCAAGCAAGACTTCCTACTATGCCGGACAAGGAGTTGTCAGGAGATAACAGTCCTAACAAAATTTCAGAAAATATTATCAATTGCTTATCAAGCATTCTCATGAGAATGAGTTCAGTTAAGAATTCGGGTCCTGCAGAAAATGAAAGAACAGAAAATTGGGATCCTTATCGTATTTGTTTGGAATTTGGACAAAGAGATATCGGTCCATATAAACAATTACACGCAATTGAAGCTCGGAATATTAATCCAAACCAAACAGCAAATGCTTTGTTCCTACTCGGCAGACTGAAACTACTGCTACGGAAACTTGCTTCTGTAAATTTACAAAGCCTCAATCATCAGGAGAAGCTTGCCTTCTGGATCAATATATACAACTCCTGCATGATGAATGCCTTCCTCGAGCACGGCATACCTGAGAGTCCCGAGATAATTGTTGCCCTAATGCAGAAAGCGACAATAAATGTTGGTGGACACATACTGAATGCAATAACTATTGAACATTTCATCTTGAGACTGCCTTTTCACTCAAAATATGGTACAAAAAATGACGAGAAGACGGCAAGAAATACTTTCGGATTGGAATTATCCGAACCGTTGGTAACGTTTGCGCTATCATGTGGCAGCTGGTCCTCCCCTTCTGTGAGAGTGTACACTGCATCCCAAGTTGAAAATGAACTGGAAGTTGCAAAAAGAGAGTACCTACAAGCTGCAGTTGGAATTTCATCAAATAGGTTTGCAATTCCAAAGATTTTGGATTGGTATTTACCTGATTTTGCTAAGGATTTGGAGTCATTGCTTGATTGGATCTGCCTTCAGCTCCCAAGTGAACTAGGAAAAGAGGCACTTAAGCTTCTTGTAAAAGGTAAAAATGAGCCTCTTTTACAATTTGTCCAAGTAATGCCGTATGAGTTTAATTTTAGGTACCTTCTATGCGCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

541

Amino Acids

61.68

Weight (kDa)

9.13

Isoelectric Point (pI)

50.21

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Lzipper-MIP1 PF14389 33 - 114 2e-23 Leucine-zipper of ternary complex factor MIP1
DUF547 PF04784 336 - 462 2.3e-40 Protein of unknown function, DUF547
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 2 cut(s) 684, 1618
Acc65I GGTACC 1 cut(s) 1605
AccB1I GGYRCC 1 cut(s) 1605
AccI GTMKAC 1 cut(s) 348
AciI CCGC 2 cut(s) 272, 668
AclI AACGTT 1 cut(s) 1286
AclWI GGATC 6 cut(s) 556, 678, 839, 852, 1052, 1496
AcsI RAATTY 7 cut(s) 110, 425, 744, 805, 866, 1003, 1401
AcuI CTGAAG 1 cut(s) 1481
AfaI GTAC 6 cut(s) 171, 407, 1222, 1334, 1382, 1607
AflII CTTAAG 1 cut(s) 1529
AgsI TTSAA 7 cut(s) 142, 357, 431, 656, 914, 1181, 1352
AjuI GAANNNNNNNTTGG 2 cut(s) 823, 855
Alw21I GWGCWC 2 cut(s) 214, 1089
Alw26I GTCTC 2 cut(s) 589, 1189
AlwI GGATC 6 cut(s) 556, 678, 839, 852, 1052, 1496
Ama87I CYCGRG 2 cut(s) 1082, 1106
ApeKI GCWGC 3 cut(s) 617, 1305, 1391
ApoI RAATTY 7 cut(s) 110, 425, 744, 805, 866, 1003, 1401
AseI ATTAAT 1 cut(s) 927
Asp700I GAANNNNTTC 4 cut(s) 91, 448, 793, 1076
Asp718I GGTACC 1 cut(s) 1605
AspLEI GCGC 3 cut(s) 685, 1294, 1619
AspS9I GGNCC 3 cut(s) 812, 887, 1311
AvaI CYCGRG 2 cut(s) 1082, 1106
AvaII GGWCC 3 cut(s) 812, 887, 1311
AxyI CCTNAGG 1 cut(s) 205
BamHI GGATCC 1 cut(s) 844
BanI GGYRCC 1 cut(s) 1605
BanII GRGCYC 1 cut(s) 214
BarI GAAGNNNNNNTAC 2 cut(s) 153, 185
BbsI GAAGAC 2 cut(s) 215, 1244
Bbv12I GWGCWC 2 cut(s) 214, 1089
BbvI GCAGC 3 cut(s) 604, 1317, 1378
BccI CCATC 1 cut(s) 487
BceAI ACGGC 3 cut(s) 1105, 1257, 1570
BcoDI GTCTC 2 cut(s) 589, 1189
BfaI CTAG 3 cut(s) 260, 660, 1514
BfmI CTRYAG 4 cut(s) 618, 647, 816, 1392
BfrI CTTAAG 1 cut(s) 1529
BisI GCNGC 3 cut(s) 618, 1306, 1392
BlsI GCNGC 3 cut(s) 619, 1307, 1393
Bme18I GGWCC 3 cut(s) 812, 887, 1311
BmeT110I CYCGRG 2 cut(s) 1082, 1106
BmgT120I GGNCC 3 cut(s) 812, 887, 1311
BmiI GGNNCC 3 cut(s) 813, 846, 1607
BmsI GCATC 1 cut(s) 1349
BpiI GAAGAC 2 cut(s) 215, 1244
BpmI CTGGAG 1 cut(s) 570
Bpu10I CCTNAGC 1 cut(s) 1461
BpuEI CTTGAG 1 cut(s) 1213
Bsa29I ATCGAT 1 cut(s) 606
BsaBI GATNNNNATC 1 cut(s) 849
BsaI GGTCTC 1 cut(s) 589
Bse1I ACTGG 2 cut(s) 587, 1365
Bse21I CCTNAGG 1 cut(s) 205
Bse3DI GCAATG 3 cut(s) 88, 553, 1475
Bse8I GATNNNNATC 1 cut(s) 849
BseCI ATCGAT 1 cut(s) 606
BseGI GGATG 2 cut(s) 479, 1340
BseJI GATNNNNATC 1 cut(s) 849
BseMI GCAATG 3 cut(s) 88, 553, 1475
BseMII CTCAG 3 cut(s) 399, 653, 1089
BseNI ACTGG 2 cut(s) 587, 1365
BseRI GAGGAG 1 cut(s) 299
BseXI GCAGC 3 cut(s) 604, 1317, 1378
BshNI GGYRCC 1 cut(s) 1605
BshVI ATCGAT 1 cut(s) 606
BsiHKAI GWGCWC 2 cut(s) 214, 1089
BsiHKCI CYCGRG 2 cut(s) 1082, 1106
BsiSI CCGG 1 cut(s) 707
BslFI GGGAC 1 cut(s) 1089
BsmAI GTCTC 2 cut(s) 589, 1189
BsmFI GGGAC 1 cut(s) 1089
BsmI GAATGC 3 cut(s) 777, 1078, 1171
Bso31I GGTCTC 1 cut(s) 589
BsoBI CYCGRG 2 cut(s) 1082, 1106
Bsp1286I GDGCHC 2 cut(s) 214, 1089
Bsp1407I TGTACA 1 cut(s) 1332
Bsp143I GATC 6 cut(s) 561, 607, 670, 844, 1044, 1488
BspACI CCGC 2 cut(s) 272, 668
BspCNI CTCAG 4 cut(s) 4, 398, 652, 1090
BspDI ATCGAT 1 cut(s) 606
BspHI TCATGA 1 cut(s) 783
BspLI GGNNCC 3 cut(s) 813, 846, 1607
BspMAI CTGCAG 3 cut(s) 622, 820, 1396
BspPI GGATC 6 cut(s) 556, 678, 839, 852, 1052, 1496
BspQI GCTCTTC 2 cut(s) 82, 536
BspT107I GGYRCC 1 cut(s) 1605
BspTI CTTAAG 1 cut(s) 1529
BspTNI GGTCTC 1 cut(s) 589
BsrDI GCAATG 3 cut(s) 88, 553, 1475
BsrGI TGTACA 1 cut(s) 1332
BsrI ACTGG 2 cut(s) 587, 1365
BssMI GATC 6 cut(s) 561, 607, 670, 844, 1044, 1488
BssNAI GTATAC 1 cut(s) 349
Bst1107I GTATAC 1 cut(s) 349
Bst4CI ACNGT 3 cut(s) 651, 734, 1278
Bst6I CTCTTC 5 cut(s) 82, 156, 276, 536, 587
BstAFI CTTAAG 1 cut(s) 1529
BstAUI TGTACA 1 cut(s) 1332
BstC8I GCNNGC 2 cut(s) 687, 1035
BstDEI CTNAG 7 cut(s) 12, 152, 205, 385, 639, 1098, 1461
BstF5I GGATG 2 cut(s) 479, 1340
BstHHI GCGC 3 cut(s) 685, 1294, 1619
BstKTI GATC 6 cut(s) 564, 610, 673, 847, 1047, 1491
BstMAI GTCTC 2 cut(s) 589, 1189
BstMBI GATC 6 cut(s) 561, 607, 670, 844, 1044, 1488
BstMWI GCNNNNNNNGC 4 cut(s) 269, 634, 774, 914
BstSFI CTRYAG 4 cut(s) 618, 647, 816, 1392
BstV1I GCAGC 3 cut(s) 604, 1317, 1378
BstV2I GAAGAC 2 cut(s) 215, 1244
BstX2I RGATCY 2 cut(s) 844, 1488
BstYI RGATCY 2 cut(s) 844, 1488
BstZ17I GTATAC 1 cut(s) 349
Bsu15I ATCGAT 1 cut(s) 606
Bsu36I CCTNAGG 1 cut(s) 205
BsuTUI ATCGAT 1 cut(s) 606
BtsCI GGATG 2 cut(s) 479, 1340
BtsI GCAGTG 1 cut(s) 1335
BtsIMutI CAGTG 3 cut(s) 462, 594, 1335
Cac8I GCNNGC 2 cut(s) 687, 1035
CciI TCATGA 1 cut(s) 783
CfoI GCGC 3 cut(s) 685, 1294, 1619
Cfr13I GGNCC 3 cut(s) 812, 887, 1311
ClaI ATCGAT 1 cut(s) 606
Csp6I GTAC 6 cut(s) 170, 406, 1221, 1333, 1381, 1606
CviAII CATG 5 cut(s) 158, 784, 1066, 1299, 1620
CviQI GTAC 6 cut(s) 170, 406, 1221, 1333, 1381, 1606
DdeI CTNAG 7 cut(s) 12, 152, 205, 385, 639, 1098, 1461
DpnI GATC 6 cut(s) 563, 609, 672, 846, 1046, 1490
DpnII GATC 6 cut(s) 561, 607, 670, 844, 1044, 1488
Eam1104I CTCTTC 5 cut(s) 82, 156, 276, 536, 587
EarI CTCTTC 5 cut(s) 82, 156, 276, 536, 587
Ecl136II GAGCTC 1 cut(s) 212
Eco24I GRGCYC 1 cut(s) 214
Eco31I GGTCTC 1 cut(s) 589
Eco32I GATATC 1 cut(s) 883
Eco47I GGWCC 3 cut(s) 812, 887, 1311
Eco53kI GAGCTC 1 cut(s) 212
Eco57I CTGAAG 1 cut(s) 1481
Eco81I CCTNAGG 1 cut(s) 205
Eco88I CYCGRG 2 cut(s) 1082, 1106
EcoICRI GAGCTC 1 cut(s) 212
EcoO109I RGGNCCY 1 cut(s) 812
EcoRI GAATTC 1 cut(s) 805
EcoRV GATATC 1 cut(s) 883
EcoT38I GRGCYC 1 cut(s) 214
FaeI CATG 5 cut(s) 161, 787, 1069, 1302, 1623
FalI AAGNNNNNCTT 8 cut(s) 678, 710, 1022, 1054, 1237, 1269, 1512, 1544
FaqI GGGAC 1 cut(s) 1089
FatI CATG 5 cut(s) 157, 783, 1065, 1298, 1619
FblI GTMKAC 1 cut(s) 348
Fnu4HI GCNGC 3 cut(s) 618, 1306, 1392
FokI GGATG 2 cut(s) 466, 1327
FriOI GRGCYC 1 cut(s) 214
Fsp4HI GCNGC 3 cut(s) 618, 1306, 1392
FspAI RTGCGCAY 1 cut(s) 1618
FspBI CTAG 3 cut(s) 260, 660, 1514
FspI TGCGCA 2 cut(s) 684, 1618
GlaI GCGC 3 cut(s) 684, 1293, 1618
GluI GCNGC 3 cut(s) 618, 1306, 1392
GsuI CTGGAG 1 cut(s) 570
HapII CCGG 1 cut(s) 707
HhaI GCGC 3 cut(s) 685, 1294, 1619
Hin1II CATG 5 cut(s) 161, 787, 1069, 1302, 1623
Hin6I GCGC 3 cut(s) 683, 1292, 1617
HinP1I GCGC 3 cut(s) 683, 1292, 1617
HindIII AAGCTT 3 cut(s) 149, 1031, 1532
HinfI GANTC 6 cut(s) 19, 401, 418, 583, 1102, 1472
HpaII CCGG 1 cut(s) 707
Hpy166II GTNNAC 5 cut(s) 349, 1154, 1333, 1335, 1511
Hpy188I TCNGA 7 cut(s) 400, 496, 642, 751, 921, 1259, 1273
Hpy188III TCNNGA 8 cut(s) 338, 674, 723, 784, 1025, 1042, 1106, 1192
Hpy8I GTNNAC 5 cut(s) 349, 1154, 1333, 1335, 1511
HpyAV CCTTC 6 cut(s) 319, 1048, 1087, 1329, 1505, 1619
HpyCH4III ACNGT 3 cut(s) 651, 734, 1278
HpyCH4IV ACGT 1 cut(s) 1286
HpyF10VI GCNNNNNNNGC 4 cut(s) 269, 634, 774, 914
HpyF3I CTNAG 7 cut(s) 12, 152, 205, 385, 639, 1098, 1461
HpySE526I ACGT 1 cut(s) 1286
Hsp92II CATG 5 cut(s) 161, 787, 1069, 1302, 1623
HspAI GCGC 3 cut(s) 683, 1292, 1617
KpnI GGTACC 1 cut(s) 1609
Kzo9I GATC 6 cut(s) 561, 607, 670, 844, 1044, 1488
LguI GCTCTTC 2 cut(s) 82, 536
LmnI GCTCC 2 cut(s) 209, 1506
Lsp1109I GCAGC 3 cut(s) 604, 1317, 1378
LweI GCATC 1 cut(s) 1349
MaeI CTAG 3 cut(s) 260, 660, 1514
MaeII ACGT 1 cut(s) 1286
MaeIII GTNAC 1 cut(s) 1282
MalI GATC 6 cut(s) 563, 609, 672, 846, 1046, 1490
MboI GATC 6 cut(s) 561, 607, 670, 844, 1044, 1488
MfeI CAATTG 2 cut(s) 763, 909
MflI RGATCY 2 cut(s) 844, 1488
MhlI GDGCHC 2 cut(s) 214, 1089
MlyI GAGTC 3 cut(s) 577, 1111, 1481
MmeI TCCRAC 1 cut(s) 1378
MroXI GAANNNNTTC 4 cut(s) 91, 448, 793, 1076
MseI TTAA 4 cut(s) 801, 927, 1530, 1596
MslI CAYNNNNRTG 2 cut(s) 782, 788
MspA1I CMGCKG 2 cut(s) 389, 1308
MspCI CTTAAG 1 cut(s) 1529
MspI CCGG 1 cut(s) 707
MunI CAATTG 2 cut(s) 763, 909
Mva1269I GAATGC 3 cut(s) 777, 1078, 1171
MwoI GCNNNNNNNGC 4 cut(s) 269, 634, 774, 914
NdeII GATC 6 cut(s) 561, 607, 670, 844, 1044, 1488
NlaIII CATG 5 cut(s) 161, 787, 1069, 1302, 1623
NlaIV GGNNCC 3 cut(s) 813, 846, 1607
NmeAIII GCCGAG 1 cut(s) 942
NsbI TGCGCA 2 cut(s) 684, 1618
PaeR7I CTCGAG 1 cut(s) 1082
PagI TCATGA 1 cut(s) 783
PciSI GCTCTTC 2 cut(s) 82, 536
PctI GAATGC 3 cut(s) 777, 1078, 1171
PdmI GAANNNNTTC 4 cut(s) 91, 448, 793, 1076
PfeI GAWTC 3 cut(s) 19, 401, 418
PkrI GCNGC 3 cut(s) 619, 1307, 1393
PleI GAGTC 3 cut(s) 577, 1110, 1480
PpsI GAGTC 3 cut(s) 577, 1110, 1480
PpuMI RGGWCCY 1 cut(s) 812
PshBI ATTAAT 1 cut(s) 927
Psp124BI GAGCTC 1 cut(s) 214
Psp1406I AACGTT 1 cut(s) 1286
Psp5II RGGWCCY 1 cut(s) 812
PspN4I GGNNCC 3 cut(s) 813, 846, 1607
PspPI GGNCC 3 cut(s) 812, 887, 1311
PspPPI RGGWCCY 1 cut(s) 812
PspXI VCTCGAGB 1 cut(s) 1082
PstI CTGCAG 3 cut(s) 622, 820, 1396
PsuI RGATCY 2 cut(s) 844, 1488
PvuII CAGCTG 2 cut(s) 389, 1308
RsaI GTAC 6 cut(s) 171, 407, 1222, 1334, 1382, 1607
RsaNI GTAC 6 cut(s) 170, 406, 1221, 1333, 1381, 1606
RseI CAYNNNNRTG 2 cut(s) 782, 788
SacI GAGCTC 1 cut(s) 214
SapI GCTCTTC 2 cut(s) 82, 536
SaqAI TTAA 4 cut(s) 801, 927, 1530, 1596
SatI GCNGC 3 cut(s) 618, 1306, 1392
Sau3AI GATC 6 cut(s) 561, 607, 670, 844, 1044, 1488
Sau96I GGNCC 3 cut(s) 812, 887, 1311
SchI GAGTC 3 cut(s) 577, 1111, 1481
SduI GDGCHC 2 cut(s) 214, 1089
SfaNI GCATC 1 cut(s) 1349
SfcI CTRYAG 4 cut(s) 618, 647, 816, 1392
Sfr274I CTCGAG 1 cut(s) 1082
SinI GGWCC 3 cut(s) 812, 887, 1311
SlaI CTCGAG 1 cut(s) 1082
SmiMI CAYNNNNRTG 2 cut(s) 782, 788
SmlI CTYRAG 3 cut(s) 1082, 1192, 1529
SmoI CTYRAG 3 cut(s) 1082, 1192, 1529
SsiI CCGC 2 cut(s) 272, 668
SspI AATATT 2 cut(s) 757, 925
SspMI CTAG 3 cut(s) 260, 660, 1514
SstI GAGCTC 1 cut(s) 214
TaaI ACNGT 3 cut(s) 651, 734, 1278
TaiI ACGT 1 cut(s) 1289
TaqI TCGA 4 cut(s) 95, 300, 606, 1083
TaqII GACCGA 1 cut(s) 875
TatI WGTACW 1 cut(s) 1332
TfiI GAWTC 3 cut(s) 19, 401, 418
Tru1I TTAA 4 cut(s) 801, 927, 1530, 1596
Tru9I TTAA 4 cut(s) 801, 927, 1530, 1596
TscAI CASTG 3 cut(s) 469, 594, 1342
TseI GCWGC 3 cut(s) 617, 1305, 1391
TspDTI ATGAA 9 cut(s) 17, 56, 174, 384, 840, 1085, 1177, 1371, 1395
TspGWI ACGGA 1 cut(s) 1000
TspRI CASTG 3 cut(s) 469, 594, 1342
Vha464I CTTAAG 1 cut(s) 1529
VpaK11BI GGWCC 3 cut(s) 812, 887, 1311
VspI ATTAAT 1 cut(s) 927
XapI RAATTY 7 cut(s) 110, 425, 744, 805, 866, 1003, 1401
XcmI CCANNNNNNNNNTGG 1 cut(s) 370
XhoI CTCGAG 1 cut(s) 1082
XmiI GTMKAC 1 cut(s) 348
XmnI GAANNNNTTC 4 cut(s) 91, 448, 793, 1076
XspI CTAG 3 cut(s) 260, 660, 1514
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.