pycom15g08230

isoform X1

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
Physical Location & Seq
Forward (+)
5125320 .. 5128564
3245 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom15g08230.7

Sequence Viewer

Length: 1653 bp
ATGAACACCAGAGTGAGGACAAGGCTGCAGTCTATGAAGCCACCTGAGAAGAATAAAAATGAAAAGGTGTCAATGCAAGGGAGTAAGATTACAGATACCAGAAAAGTAATCAGCAATGGAAGAGCTTCGAGCAGAGAGAGAAAATTGGCTTTACAACAAGATGTTGATAAGTTGAAGAAGAAGCTCAGACATGAAGAGAATGTACACAGAGCTTTGCAGAGGGCATTTACAAGACCCTTAGGAGCTCTTCCTCGTCTTCCTCCTTATCTGCCTCCTTATACATTAGAGCTTCTAGCAGAAGTGGCGGTTTTGGAAGAGGAGGTGGTTCGGCTCGAAGAACAGGTAGTGCATTTTAGGAAGGACTTGTATCAGGAAGCTGTATACATTTCAACCTCCAAGAGGAACATGGAAACATCCTCAGCTGTTTCATCTGATTCGTACCCGATAAAGAATCCCAAATTTCAATCTCAAGGGGGAAACAATTCTACCAATTCCACTGAAAAGGATTGTCCATCCTCTTACGTTTCAGATGATAAGCAGGGAAAAGAGAACCAATCATATAATAATTCTACGAAGAGCAATGAGAGAGCCTTGATCCATAAAGGTCAGGTTAGGACTCCAGCGAAGAGACCTCCAATCGATCACAGAGCTGCAGATAAGCGTTTAGAGCCTCAGAAACTACAGTTTGAAACTAGAACTGCGGATCAAGAAAGTGCGCAAGCAAGACTTCCTAGTGTGCCGGACAAGGAGTTGTCAGGAGATAACAGTCCGAACAAAATTTCAGAAAATATTATCAATTGCTTATCAAGCATTCTCATGAGAATGAGTTCAGTTAAGAATTCGGGTCCTGCAGAAAATTGGGATCCTTATGATATTTGTTTGGAATTTGGACAAAGAGATATCGGTCCATATAAGCAATTACACGCAATCGAAGCTCGGAATATTAATCCAAACCAAACAGCAAATGCTTTGTTCCTACTCCGCAGATTGAAACTACTGCTACGGAAACTTGCTTCTGTAAATTTACAAAGCCTCAATCATCAGGAGAAGCTTGCCTTCTGGATCAATATATACAACTCCTGCATGATAAATGCCTTCCTTGAGCACGGCATACCTGAGAGTCCCGAGATAATTGTTGCCCTAATGCAGAAGGCGACAATAAATGTTGGGGGACACATACTGAATGCAATAACGATTGAACATTTCATCTTGAGACTGCCTTTTCACTCAAAATATACCTTCTCCAAGGGTACAAAAAATGATGAGAAGACGGCAAGAAATACTTTCGGATTGGAATTATCCGAACCGTTGGTAACGTTTGCGCTATCATGTGGCAGCTGGTCCTCCCCTTCTGTGAGAGTGTACACTGCATCCCAAGTTGAAAATGAACTGGAAGTTGCAAAAAGAGAGTACCTACAAGCTGCAGTTGGAATTTCATCAAATAGGTTTGCAATTCCAAAGATTTTGGATTGGTATTTACCTGATTTTGCTAAGGATTTGGAGTCATTGCTTGATTGGATCTGCCTTCAGCTCCCAAGTGAACTAGGAAAAGAGGCACTTAAGCTTCTTGAAAGAGGTAAAAATGAGCCTCTTTTACAATTTGTCCAAGTAATGCCGTATGAGTTTAATTTTAGGTACCTTCTATGCACATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

551

Amino Acids

62.57

Weight (kDa)

9.14

Isoelectric Point (pI)

50.96

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 717
Acc65I GGTACC 1 cut(s) 1635
AccB1I GGYRCC 1 cut(s) 1635
AccI GTMKAC 1 cut(s) 381
AciI CCGC 3 cut(s) 305, 701, 982
AclI AACGTT 1 cut(s) 1316
AclWI GGATC 6 cut(s) 589, 711, 857, 870, 1070, 1526
AcsI RAATTY 6 cut(s) 458, 777, 838, 884, 1021, 1431
AcuI CTGAAG 1 cut(s) 1511
AfaI GTAC 6 cut(s) 204, 440, 1252, 1364, 1412, 1637
AfiI CCNNNNNNNGG 2 cut(s) 15, 399
AflII CTTAAG 1 cut(s) 1559
AgsI TTSAA 8 cut(s) 175, 390, 464, 689, 991, 1199, 1382, 1571
AleI CACNNNNGTG 1 cut(s) 11
Alw21I GWGCWC 2 cut(s) 247, 1107
Alw26I GTCTC 2 cut(s) 622, 1207
AlwI GGATC 6 cut(s) 589, 711, 857, 870, 1070, 1526
Ama87I CYCGRG 1 cut(s) 1124
ApeKI GCWGC 4 cut(s) 25, 650, 1335, 1421
ApoI RAATTY 6 cut(s) 458, 777, 838, 884, 1021, 1431
AseI ATTAAT 1 cut(s) 945
Asp700I GAANNNNTTC 3 cut(s) 124, 481, 826
Asp718I GGTACC 1 cut(s) 1635
AspLEI GCGC 2 cut(s) 718, 1324
AspS9I GGNCC 3 cut(s) 845, 905, 1341
AvaI CYCGRG 1 cut(s) 1124
AvaII GGWCC 3 cut(s) 845, 905, 1341
AxyI CCTNAGG 1 cut(s) 238
BamHI GGATCC 1 cut(s) 862
BanI GGYRCC 1 cut(s) 1635
BanII GRGCYC 1 cut(s) 247
BarI GAAGNNNNNNTAC 2 cut(s) 186, 218
BbsI GAAGAC 2 cut(s) 248, 1274
Bbv12I GWGCWC 2 cut(s) 247, 1107
BbvCI CCTCAGC 1 cut(s) 418
BbvI GCAGC 4 cut(s) 12, 637, 1347, 1408
BccI CCATC 1 cut(s) 520
BceAI ACGGC 3 cut(s) 1123, 1287, 1600
BcoDI GTCTC 2 cut(s) 622, 1207
BfaI CTAG 4 cut(s) 293, 693, 732, 1544
BfmI CTRYAG 5 cut(s) 26, 651, 680, 849, 1422
BfrI CTTAAG 1 cut(s) 1559
BisI GCNGC 4 cut(s) 26, 651, 1336, 1422
BlsI GCNGC 4 cut(s) 27, 652, 1337, 1423
Bme18I GGWCC 3 cut(s) 845, 905, 1341
BmeT110I CYCGRG 1 cut(s) 1124
BmgT120I GGNCC 3 cut(s) 845, 905, 1341
BmiI GGNNCC 3 cut(s) 846, 864, 1637
BmsI GCATC 1 cut(s) 1379
BpiI GAAGAC 2 cut(s) 248, 1274
BpmI CTGGAG 1 cut(s) 603
Bpu10I CCTNAGC 2 cut(s) 418, 1491
BpuEI CTTGAG 3 cut(s) 453, 1121, 1231
Bsa29I ATCGAT 1 cut(s) 639
BsaI GGTCTC 1 cut(s) 622
BsaJI CCNNGG 1 cut(s) 1245
Bsc4I CCNNNNNNNGG 2 cut(s) 15, 399
Bse1I ACTGG 1 cut(s) 1395
Bse21I CCTNAGG 1 cut(s) 238
Bse3DI GCAATG 3 cut(s) 121, 586, 1505
BseCI ATCGAT 1 cut(s) 639
BseDI CCNNGG 1 cut(s) 1245
BseGI GGATG 3 cut(s) 413, 512, 1370
BseLI CCNNNNNNNGG 2 cut(s) 15, 399
BseMI GCAATG 3 cut(s) 121, 586, 1505
BseMII CTCAG 5 cut(s) 36, 199, 432, 686, 1107
BseNI ACTGG 1 cut(s) 1395
BseRI GAGGAG 1 cut(s) 332
BseXI GCAGC 4 cut(s) 12, 637, 1347, 1408
BshNI GGYRCC 1 cut(s) 1635
BshVI ATCGAT 1 cut(s) 639
BsiHKAI GWGCWC 2 cut(s) 247, 1107
BsiHKCI CYCGRG 1 cut(s) 1124
BsiSI CCGG 1 cut(s) 740
BslFI GGGAC 2 cut(s) 1107, 1185
BslI CCNNNNNNNGG 2 cut(s) 15, 399
BsmAI GTCTC 2 cut(s) 622, 1207
BsmFI GGGAC 2 cut(s) 1107, 1185
BsmI GAATGC 2 cut(s) 810, 1189
Bso31I GGTCTC 1 cut(s) 622
BsoBI CYCGRG 1 cut(s) 1124
Bsp1286I GDGCHC 2 cut(s) 247, 1107
Bsp1407I TGTACA 2 cut(s) 202, 1362
Bsp143I GATC 6 cut(s) 594, 640, 703, 862, 1062, 1518
BspACI CCGC 3 cut(s) 305, 701, 982
BspCNI CTCAG 5 cut(s) 37, 198, 431, 685, 1108
BspDI ATCGAT 1 cut(s) 639
BspHI TCATGA 1 cut(s) 816
BspLI GGNNCC 3 cut(s) 846, 864, 1637
BspMAI CTGCAG 4 cut(s) 30, 655, 853, 1426
BspPI GGATC 6 cut(s) 589, 711, 857, 870, 1070, 1526
BspQI GCTCTTC 3 cut(s) 115, 252, 569
BspT107I GGYRCC 1 cut(s) 1635
BspTI CTTAAG 1 cut(s) 1559
BspTNI GGTCTC 1 cut(s) 622
BsrDI GCAATG 3 cut(s) 121, 586, 1505
BsrGI TGTACA 2 cut(s) 202, 1362
BsrI ACTGG 1 cut(s) 1395
BssECI CCNNGG 1 cut(s) 1245
BssMI GATC 6 cut(s) 594, 640, 703, 862, 1062, 1518
BssNAI GTATAC 1 cut(s) 382
BssT1I CCWWGG 1 cut(s) 1245
Bst1107I GTATAC 1 cut(s) 382
Bst4CI ACNGT 3 cut(s) 684, 767, 1308
Bst6I CTCTTC 6 cut(s) 115, 189, 252, 309, 569, 620
BstAFI CTTAAG 1 cut(s) 1559
BstAUI TGTACA 2 cut(s) 202, 1362
BstC8I GCNNGC 2 cut(s) 720, 1053
BstDEI CTNAG 7 cut(s) 45, 185, 238, 418, 672, 1116, 1491
BstENI CCTNNNNNAGG 1 cut(s) 397
BstF5I GGATG 3 cut(s) 413, 512, 1370
BstHHI GCGC 2 cut(s) 718, 1324
BstKTI GATC 6 cut(s) 597, 643, 706, 865, 1065, 1521
BstMAI GTCTC 2 cut(s) 622, 1207
BstMBI GATC 6 cut(s) 594, 640, 703, 862, 1062, 1518
BstMWI GCNNNNNNNGC 4 cut(s) 302, 667, 807, 932
BstSFI CTRYAG 5 cut(s) 26, 651, 680, 849, 1422
BstV1I GCAGC 4 cut(s) 12, 637, 1347, 1408
BstV2I GAAGAC 2 cut(s) 248, 1274
BstX2I RGATCY 2 cut(s) 862, 1518
BstYI RGATCY 2 cut(s) 862, 1518
BstZ17I GTATAC 1 cut(s) 382
Bsu15I ATCGAT 1 cut(s) 639
Bsu36I CCTNAGG 1 cut(s) 238
BsuTUI ATCGAT 1 cut(s) 639
BtsCI GGATG 3 cut(s) 413, 512, 1370
BtsI GCAGTG 1 cut(s) 1365
BtsIMutI CAGTG 2 cut(s) 495, 1365
Cac8I GCNNGC 2 cut(s) 720, 1053
CciI TCATGA 1 cut(s) 816
CfoI GCGC 2 cut(s) 718, 1324
Cfr13I GGNCC 3 cut(s) 845, 905, 1341
ClaI ATCGAT 1 cut(s) 639
Csp6I GTAC 6 cut(s) 203, 439, 1251, 1363, 1411, 1636
CviAII CATG 6 cut(s) 191, 406, 817, 1084, 1329, 1650
CviQI GTAC 6 cut(s) 203, 439, 1251, 1363, 1411, 1636
DdeI CTNAG 7 cut(s) 45, 185, 238, 418, 672, 1116, 1491
DpnI GATC 6 cut(s) 596, 642, 705, 864, 1064, 1520
DpnII GATC 6 cut(s) 594, 640, 703, 862, 1062, 1518
Eam1104I CTCTTC 6 cut(s) 115, 189, 252, 309, 569, 620
EarI CTCTTC 6 cut(s) 115, 189, 252, 309, 569, 620
Ecl136II GAGCTC 1 cut(s) 245
Eco130I CCWWGG 1 cut(s) 1245
Eco24I GRGCYC 1 cut(s) 247
Eco31I GGTCTC 1 cut(s) 622
Eco32I GATATC 1 cut(s) 901
Eco47I GGWCC 3 cut(s) 845, 905, 1341
Eco53kI GAGCTC 1 cut(s) 245
Eco57I CTGAAG 1 cut(s) 1511
Eco81I CCTNAGG 1 cut(s) 238
Eco88I CYCGRG 1 cut(s) 1124
EcoICRI GAGCTC 1 cut(s) 245
EcoNI CCTNNNNNAGG 1 cut(s) 397
EcoO109I RGGNCCY 1 cut(s) 845
EcoRI GAATTC 1 cut(s) 838
EcoRV GATATC 1 cut(s) 901
EcoT14I CCWWGG 1 cut(s) 1245
EcoT38I GRGCYC 1 cut(s) 247
ErhI CCWWGG 1 cut(s) 1245
FaeI CATG 6 cut(s) 194, 409, 820, 1087, 1332, 1653
FalI AAGNNNNNCTT 8 cut(s) 711, 743, 1040, 1072, 1267, 1299, 1542, 1574
FaqI GGGAC 2 cut(s) 1107, 1185
FatI CATG 6 cut(s) 190, 405, 816, 1083, 1328, 1649
FblI GTMKAC 1 cut(s) 381
Fnu4HI GCNGC 4 cut(s) 26, 651, 1336, 1422
FokI GGATG 3 cut(s) 400, 499, 1357
FriOI GRGCYC 1 cut(s) 247
Fsp4HI GCNGC 4 cut(s) 26, 651, 1336, 1422
FspBI CTAG 4 cut(s) 293, 693, 732, 1544
FspI TGCGCA 1 cut(s) 717
GlaI GCGC 2 cut(s) 717, 1323
GluI GCNGC 4 cut(s) 26, 651, 1336, 1422
GsuI CTGGAG 1 cut(s) 603
HapII CCGG 1 cut(s) 740
HhaI GCGC 2 cut(s) 718, 1324
Hin1II CATG 6 cut(s) 194, 409, 820, 1087, 1332, 1653
Hin6I GCGC 2 cut(s) 716, 1322
HinP1I GCGC 2 cut(s) 716, 1322
HindIII AAGCTT 2 cut(s) 1049, 1562
HinfI GANTC 5 cut(s) 434, 451, 616, 1120, 1502
HpaII CCGG 1 cut(s) 740
Hpy166II GTNNAC 5 cut(s) 205, 382, 1363, 1365, 1541
Hpy188I TCNGA 9 cut(s) 188, 433, 529, 675, 771, 784, 939, 1289, 1303
Hpy188III TCNNGA 9 cut(s) 371, 707, 756, 817, 1043, 1060, 1124, 1210, 1568
Hpy8I GTNNAC 5 cut(s) 205, 382, 1363, 1365, 1541
HpyAV CCTTC 8 cut(s) 352, 1066, 1105, 1144, 1249, 1359, 1535, 1649
HpyCH4III ACNGT 3 cut(s) 684, 767, 1308
HpyCH4IV ACGT 2 cut(s) 522, 1316
HpyF10VI GCNNNNNNNGC 4 cut(s) 302, 667, 807, 932
HpyF3I CTNAG 7 cut(s) 45, 185, 238, 418, 672, 1116, 1491
HpySE526I ACGT 2 cut(s) 522, 1316
Hsp92II CATG 6 cut(s) 194, 409, 820, 1087, 1332, 1653
HspAI GCGC 2 cut(s) 716, 1322
KpnI GGTACC 1 cut(s) 1639
Kzo9I GATC 6 cut(s) 594, 640, 703, 862, 1062, 1518
LguI GCTCTTC 3 cut(s) 115, 252, 569
LmnI GCTCC 2 cut(s) 242, 1536
Lsp1109I GCAGC 4 cut(s) 12, 637, 1347, 1408
LweI GCATC 1 cut(s) 1379
MaeI CTAG 4 cut(s) 293, 693, 732, 1544
MaeII ACGT 2 cut(s) 522, 1316
MaeIII GTNAC 1 cut(s) 1312
MalI GATC 6 cut(s) 596, 642, 705, 864, 1064, 1520
MboI GATC 6 cut(s) 594, 640, 703, 862, 1062, 1518
MfeI CAATTG 1 cut(s) 796
MflI RGATCY 2 cut(s) 862, 1518
MhlI GDGCHC 2 cut(s) 247, 1107
MlyI GAGTC 3 cut(s) 610, 1129, 1511
MmeI TCCRAC 1 cut(s) 1408
MroXI GAANNNNTTC 3 cut(s) 124, 481, 826
MseI TTAA 4 cut(s) 834, 945, 1560, 1626
MslI CAYNNNNRTG 3 cut(s) 11, 815, 821
MspA1I CMGCKG 2 cut(s) 422, 1338
MspCI CTTAAG 1 cut(s) 1559
MspI CCGG 1 cut(s) 740
MunI CAATTG 1 cut(s) 796
Mva1269I GAATGC 2 cut(s) 810, 1189
MwoI GCNNNNNNNGC 4 cut(s) 302, 667, 807, 932
NdeII GATC 6 cut(s) 594, 640, 703, 862, 1062, 1518
NlaIII CATG 6 cut(s) 194, 409, 820, 1087, 1332, 1653
NlaIV GGNNCC 3 cut(s) 846, 864, 1637
NsbI TGCGCA 1 cut(s) 717
OliI CACNNNNGTG 1 cut(s) 11
PagI TCATGA 1 cut(s) 816
PciSI GCTCTTC 3 cut(s) 115, 252, 569
PctI GAATGC 2 cut(s) 810, 1189
PdmI GAANNNNTTC 3 cut(s) 124, 481, 826
PfeI GAWTC 2 cut(s) 434, 451
PkrI GCNGC 4 cut(s) 27, 652, 1337, 1423
PleI GAGTC 3 cut(s) 610, 1128, 1510
PpsI GAGTC 3 cut(s) 610, 1128, 1510
PpuMI RGGWCCY 1 cut(s) 845
PshBI ATTAAT 1 cut(s) 945
Psp124BI GAGCTC 1 cut(s) 247
Psp1406I AACGTT 1 cut(s) 1316
Psp5II RGGWCCY 1 cut(s) 845
PspN4I GGNNCC 3 cut(s) 846, 864, 1637
PspPI GGNCC 3 cut(s) 845, 905, 1341
PspPPI RGGWCCY 1 cut(s) 845
PstI CTGCAG 4 cut(s) 30, 655, 853, 1426
PsuI RGATCY 2 cut(s) 862, 1518
PvuII CAGCTG 2 cut(s) 422, 1338
RsaI GTAC 6 cut(s) 204, 440, 1252, 1364, 1412, 1637
RsaNI GTAC 6 cut(s) 203, 439, 1251, 1363, 1411, 1636
RseI CAYNNNNRTG 3 cut(s) 11, 815, 821
SacI GAGCTC 1 cut(s) 247
SapI GCTCTTC 3 cut(s) 115, 252, 569
SaqAI TTAA 4 cut(s) 834, 945, 1560, 1626
SatI GCNGC 4 cut(s) 26, 651, 1336, 1422
Sau3AI GATC 6 cut(s) 594, 640, 703, 862, 1062, 1518
Sau96I GGNCC 3 cut(s) 845, 905, 1341
SchI GAGTC 3 cut(s) 610, 1129, 1511
SduI GDGCHC 2 cut(s) 247, 1107
SfaNI GCATC 1 cut(s) 1379
SfcI CTRYAG 5 cut(s) 26, 651, 680, 849, 1422
SinI GGWCC 3 cut(s) 845, 905, 1341
SmiMI CAYNNNNRTG 3 cut(s) 11, 815, 821
SmlI CTYRAG 4 cut(s) 468, 1100, 1210, 1559
SmoI CTYRAG 4 cut(s) 468, 1100, 1210, 1559
SsiI CCGC 3 cut(s) 305, 701, 982
SspI AATATT 2 cut(s) 790, 943
SspMI CTAG 4 cut(s) 293, 693, 732, 1544
SstI GAGCTC 1 cut(s) 247
StyI CCWWGG 1 cut(s) 1245
TaaI ACNGT 3 cut(s) 684, 767, 1308
TaiI ACGT 2 cut(s) 525, 1319
TaqI TCGA 4 cut(s) 128, 333, 639, 930
TaqII GACCGA 1 cut(s) 893
TatI WGTACW 2 cut(s) 202, 1362
TfiI GAWTC 2 cut(s) 434, 451
Tru1I TTAA 4 cut(s) 834, 945, 1560, 1626
Tru9I TTAA 4 cut(s) 834, 945, 1560, 1626
TscAI CASTG 2 cut(s) 502, 1372
TseI GCWGC 4 cut(s) 25, 650, 1335, 1421
TspDTI ATGAA 8 cut(s) 17, 50, 75, 207, 417, 1195, 1401, 1425
TspGWI ACGGA 1 cut(s) 1018
TspRI CASTG 2 cut(s) 502, 1372
Vha464I CTTAAG 1 cut(s) 1559
VpaK11BI GGWCC 3 cut(s) 845, 905, 1341
VspI ATTAAT 1 cut(s) 945
XagI CCTNNNNNAGG 1 cut(s) 397
XapI RAATTY 6 cut(s) 458, 777, 838, 884, 1021, 1431
XcmI CCANNNNNNNNNTGG 1 cut(s) 403
XmiI GTMKAC 1 cut(s) 381
XmnI GAANNNNTTC 3 cut(s) 124, 481, 826
XspI CTAG 4 cut(s) 293, 693, 732, 1544
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.