Rorug06G0355900

isoform X1

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
Physical Location & Seq
Reverse (-)
50328847 .. 50338953
10107 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0355900.1

Sequence Viewer

Length: 1395 bp
ATGGAGTTTGGAGAAGAAGGACTACTATTAGAGCCGGTGAGCCCTGGTGGTCAATTCTTCAACAGCACTGTCTTATCTCTTGCAATTATTGCTGTTTTGGAAGCACAAGTTCCAATCAACGATTCTCAAACTTTGTCACTTCTTAAAAATGTCTTCCTCCCGATCAATCCACGCTTCTCTTCCATCATGGTTAAAGATGTAGATGAAAAGAATAAGCAGTGGAAGAGGGTTCAAGTGAAGCTGGAAGACCATGTACATGTCCCCATTTTCCCATCCGGAATGTCACTTGAATCATATGATACTTACTTTGATGAATATATAACGAAGATAGCATCAGAAACATTCCCACAAAGCAGGCCATTATGGGAAATTCATCTTTTCAAATACCCAACAAGTCATGCAGCTGGACAACTAATATTCAAGATCCATCATGCCCTTGGCGATGGCTACTCTCTCATGGGCGCTCTTCTCTCTTGTCTCCAAAATGCTCACAATCCTTCTCTTCCTCTGACATTTCCTCCACTAATGGGTGCAAAGAATGAAACTAGTAGTCGATCTCGTGTGTTTGAGTTTGTGCCTAAGATACTTTCTGCCGTTATCAACGGTGCATGGGATTTTAGTTGGAGCATTTTAAAGGGCACTTGGGTTGAAGATGATCGAACACCAATAAGGTCCGGCGTTGATGGAGTTGAGTTTCGGCCTGTGTCCATATCGACCTTGATGCTGTCTATTGAGGAAATCAAACTTATCAAGAACAAGCTTGGAGTGACGATAAATGATGTTATTGCGGGAACAATCTTTCTGGGCACCCGAATGTACATGCAACGGATGAATAGTGAAAAATCAAGTAGCCAGAATTGCACGGCATTGGTGTTGCTGAATACTAGACTTGCTGCGGGTTACAAGTCAGTGCAGGAGATGTTGATGGAACCAAGCAAGTCTTCTTGGGGCAACCGATTTGTGTTCTTGCATGTCCCGGTGCCCAAGTCGAGTGAAGTTTCCAAGCCATTGGATTTTGTATGGGAAGCACAGAAGATAGTCAAGAGACATAGAAGCTCTTCAGCTTGGTACCTCACTATTAGGCTCTGGGACATTTTGAAGAAATTTAGAGGCGCTGAGGTTGCGGCTGGATACATTCATAGAACACTCATGAACTCAAGCATGGCAGTCACAAATATGATTGGGCCACTAGAACAAATGTCTTTGGCTGATCAACCCATTAAAGGAGTCTACTTTATGGTGGTCGGTTCACCTCAGAGTCTTACTATAACAGCAATGAGTTATATGGGAAAGCTAAGGATTGCCATGGGAGCTGAAAAAGGCTTCATAGATTCCAACAAATTGCAAGCATGCATGAAAGATGCATTTCAGTTGATATCTGAAGCTGCAAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

464

Amino Acids

51.88

Weight (kDa)

8.72

Isoelectric Point (pI)

47.91

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
WS_DGAT_cat PF03007 64 - 262 1e-09 Wax ester synthase/diacylglycerol acyltransferase catalytic domain
WS_DGAT_C PF06974 316 - 459 2.4e-36 WS/DGAT C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 1068
AccB1I GGYRCC 3 cut(s) 806, 979, 1068
AccI GTMKAC 1 cut(s) 1230
AccIII TCCGGA 1 cut(s) 275
AciI CCGC 3 cut(s) 788, 896, 1124
AclWI GGATC 1 cut(s) 418
AcsI RAATTY 2 cut(s) 369, 1103
AcuI CTGAAG 1 cut(s) 1044
AfaI GTAC 3 cut(s) 255, 818, 1070
AfiI CCNNNNNNNGG 2 cut(s) 527, 1223
AflIII ACRYGT 1 cut(s) 256
AgsI TTSAA 7 cut(s) 61, 233, 290, 382, 421, 650, 1099
AhlI ACTAGT 1 cut(s) 545
AjnI CCWGG 1 cut(s) 43
AjuI GAANNNNNNNTTGG 4 cut(s) 106, 138, 925, 957
AluBI AGCT 8 cut(s) 241, 404, 760, 1056, 1064, 1294, 1313, 1385
AluI AGCT 8 cut(s) 241, 404, 760, 1056, 1064, 1294, 1313, 1385
Alw26I GTCTC 2 cut(s) 482, 1039
AlwI GGATC 1 cut(s) 418
Aor13HI TCCGGA 1 cut(s) 275
AoxI GGCC 3 cut(s) 356, 698, 1184
ApeKI GCWGC 3 cut(s) 401, 893, 1385
ApoI RAATTY 2 cut(s) 369, 1103
Asp700I GAANNNNTTC 1 cut(s) 1057
Asp718I GGTACC 1 cut(s) 1068
AspLEI GCGC 2 cut(s) 464, 1115
AspS9I GGNCC 2 cut(s) 672, 1184
AsuC2I CCSGG 1 cut(s) 977
AsuHPI GGTGA 2 cut(s) 49, 1242
AvaII GGWCC 1 cut(s) 672
BaeGI GKGCMC 3 cut(s) 641, 809, 984
BanI GGYRCC 3 cut(s) 806, 979, 1068
BanII GRGCYC 1 cut(s) 44
BarI GAAGNNNNNNTAC 3 cut(s) 38, 237, 269
BauI CACGAG 1 cut(s) 558
BbsI GAAGAC 3 cut(s) 145, 252, 933
BbvCI CCTCAGC 1 cut(s) 1116
BbvI GCAGC 3 cut(s) 413, 880, 1372
BccI CCATC 6 cut(s) 191, 280, 435, 437, 677, 919
BceAI ACGGC 2 cut(s) 578, 879
BcgI CGANNNNNNTGC 2 cut(s) 703, 737
BciT130I CCWGG 1 cut(s) 45
BciVI GTATCC 1 cut(s) 1124
BclI TGATCA 1 cut(s) 1210
BcnI CCSGG 1 cut(s) 977
BcoDI GTCTC 2 cut(s) 482, 1039
BcuI ACTAGT 1 cut(s) 545
BfaI CTAG 3 cut(s) 546, 885, 1190
BfoI RGCGCY 2 cut(s) 465, 1116
BfuI GTATCC 1 cut(s) 1124
BisI GCNGC 4 cut(s) 402, 894, 1125, 1386
BlsI GCNGC 4 cut(s) 403, 895, 1126, 1387
Bme1390I CCNGG 2 cut(s) 45, 977
Bme18I GGWCC 1 cut(s) 672
BmgT120I GGNCC 2 cut(s) 672, 1184
BmiI GGNNCC 4 cut(s) 808, 930, 981, 1070
BmrFI CCNGG 2 cut(s) 45, 977
BmsI GCATC 3 cut(s) 341, 711, 1351
BpiI GAAGAC 3 cut(s) 145, 252, 933
Bpu10I CCTNAGC 2 cut(s) 1116, 1295
BpuEI CTTGAG 1 cut(s) 1141
BpuMI CCSGG 1 cut(s) 977
BsaJI CCNNGG 3 cut(s) 43, 436, 1305
BsaWI WCCGGW 1 cut(s) 275
BsaXI ACNNNNNCTCC 2 cut(s) 502, 532
Bsc4I CCNNNNNNNGG 2 cut(s) 527, 1223
Bse118I RCCGGY 1 cut(s) 34
Bse3DI GCAATG 1 cut(s) 1281
BseAI TCCGGA 1 cut(s) 275
BseBI CCWGG 1 cut(s) 45
BseDI CCNNGG 3 cut(s) 43, 436, 1305
BseGI GGATG 2 cut(s) 272, 834
BseLI CCNNNNNNNGG 2 cut(s) 527, 1223
BseMI GCAATG 1 cut(s) 1281
BseMII CTCAG 2 cut(s) 1107, 1268
BseSI GKGCMC 3 cut(s) 641, 809, 984
BseXI GCAGC 3 cut(s) 413, 880, 1372
BsgI GTGCAG 1 cut(s) 932
BshFI GGCC 3 cut(s) 358, 700, 1186
BshNI GGYRCC 3 cut(s) 806, 979, 1068
BsiSI CCGG 4 cut(s) 35, 276, 675, 977
BslFI GGGAC 3 cut(s) 245, 959, 1103
BslI CCNNNNNNNGG 2 cut(s) 527, 1223
BsmAI GTCTC 2 cut(s) 482, 1039
BsmFI GGGAC 3 cut(s) 245, 959, 1103
BsnI GGCC 3 cut(s) 358, 700, 1186
Bsp1286I GDGCHC 4 cut(s) 44, 641, 809, 984
Bsp13I TCCGGA 1 cut(s) 275
Bsp1407I TGTACA 2 cut(s) 253, 816
Bsp143I GATC 5 cut(s) 162, 423, 554, 655, 1210
Bsp19I CCATGG 1 cut(s) 1305
BspACI CCGC 3 cut(s) 788, 896, 1124
BspANI GGCC 3 cut(s) 358, 700, 1186
BspCNI CTCAG 2 cut(s) 1108, 1267
BspEI TCCGGA 1 cut(s) 275
BspHI TCATGA 1 cut(s) 1149
BspLI GGNNCC 4 cut(s) 808, 930, 981, 1070
BspPI GGATC 1 cut(s) 418
BspQI GCTCTTC 2 cut(s) 471, 1063
BspT107I GGYRCC 3 cut(s) 806, 979, 1068
BsrDI GCAATG 1 cut(s) 1281
BsrFI RCCGGY 1 cut(s) 34
BsrGI TGTACA 2 cut(s) 253, 816
BssAI RCCGGY 1 cut(s) 34
BssECI CCNNGG 3 cut(s) 43, 436, 1305
BssMI GATC 5 cut(s) 162, 423, 554, 655, 1210
BssSI CACGAG 1 cut(s) 558
BssT1I CCWWGG 2 cut(s) 436, 1305
Bst2BI CACGAG 1 cut(s) 558
Bst2UI CCWGG 1 cut(s) 45
Bst4CI ACNGT 2 cut(s) 70, 605
Bst6I CTCTTC 5 cut(s) 184, 218, 471, 507, 1063
BstAPI GCANNNNNTGC 1 cut(s) 89
BstAUI TGTACA 2 cut(s) 253, 816
BstC8I GCNNGC 3 cut(s) 356, 1347, 1351
BstDEI CTNAG 4 cut(s) 579, 1116, 1254, 1295
BstDSI CCRYGG 1 cut(s) 1305
BstF5I GGATG 2 cut(s) 272, 834
BstH2I RGCGCY 2 cut(s) 465, 1116
BstHHI GCGC 2 cut(s) 464, 1115
BstKTI GATC 5 cut(s) 165, 426, 557, 658, 1213
BstMAI GTCTC 2 cut(s) 482, 1039
BstMBI GATC 5 cut(s) 162, 423, 554, 655, 1210
BstMWI GCNNNNNNNGC 4 cut(s) 89, 858, 1121, 1310
BstNI CCWGG 1 cut(s) 45
BstNSI RCATGY 4 cut(s) 260, 823, 974, 1353
BstSCI CCNGG 2 cut(s) 43, 975
BstSLI GKGCMC 3 cut(s) 641, 809, 984
BstV1I GCAGC 3 cut(s) 413, 880, 1372
BstV2I GAAGAC 3 cut(s) 145, 252, 933
BstX2I RGATCY 1 cut(s) 423
BstXI CCANNNNNNTGG 1 cut(s) 1009
BstYI RGATCY 1 cut(s) 423
BsuI GTATCC 1 cut(s) 1124
BsuRI GGCC 3 cut(s) 358, 700, 1186
BtgI CCRYGG 1 cut(s) 1305
BtgZI GCGATG 1 cut(s) 456
BtsCI GGATG 2 cut(s) 272, 834
BtsI GCAGTG 1 cut(s) 224
BtsIMutI CAGTG 3 cut(s) 66, 224, 915
Cac8I GCNNGC 3 cut(s) 356, 1347, 1351
CciI TCATGA 1 cut(s) 1149
CfoI GCGC 2 cut(s) 464, 1115
Cfr10I RCCGGY 1 cut(s) 34
Cfr13I GGNCC 2 cut(s) 672, 1184
Csp6I GTAC 3 cut(s) 254, 817, 1069
CviQI GTAC 3 cut(s) 254, 817, 1069
DdeI CTNAG 4 cut(s) 579, 1116, 1254, 1295
DpnI GATC 5 cut(s) 164, 425, 556, 657, 1212
DpnII GATC 5 cut(s) 162, 423, 554, 655, 1210
DraI TTTAAA 1 cut(s) 633
Eam1104I CTCTTC 5 cut(s) 184, 218, 471, 507, 1063
EarI CTCTTC 5 cut(s) 184, 218, 471, 507, 1063
Eco130I CCWWGG 2 cut(s) 436, 1305
Eco24I GRGCYC 1 cut(s) 44
Eco32I GATATC 1 cut(s) 1377
Eco47I GGWCC 1 cut(s) 672
Eco57I CTGAAG 1 cut(s) 1044
EcoRII CCWGG 1 cut(s) 43
EcoRV GATATC 1 cut(s) 1377
EcoT14I CCWWGG 2 cut(s) 436, 1305
EcoT22I ATGCAT 2 cut(s) 1355, 1366
EcoT38I GRGCYC 1 cut(s) 44
ErhI CCWWGG 2 cut(s) 436, 1305
FalI AAGNNNNNCTT 2 cut(s) 925, 957
FaqI GGGAC 3 cut(s) 245, 959, 1103
FauI CCCGC 2 cut(s) 781, 889
FauNDI CATATG 1 cut(s) 295
FbaI TGATCA 1 cut(s) 1210
FblI GTMKAC 1 cut(s) 1230
Fnu4HI GCNGC 4 cut(s) 402, 894, 1125, 1386
FokI GGATG 2 cut(s) 259, 841
FriOI GRGCYC 1 cut(s) 44
Fsp4HI GCNGC 4 cut(s) 402, 894, 1125, 1386
FspBI CTAG 3 cut(s) 546, 885, 1190
GlaI GCGC 2 cut(s) 463, 1114
GluI GCNGC 4 cut(s) 402, 894, 1125, 1386
HaeII RGCGCY 2 cut(s) 465, 1116
HaeIII GGCC 3 cut(s) 358, 700, 1186
HapII CCGG 4 cut(s) 35, 276, 675, 977
HhaI GCGC 2 cut(s) 464, 1115
Hin6I GCGC 2 cut(s) 462, 1113
HinP1I GCGC 2 cut(s) 462, 1113
HindIII AAGCTT 1 cut(s) 758
HinfI GANTC 5 cut(s) 122, 290, 1227, 1258, 1331
HpaII CCGG 4 cut(s) 35, 276, 675, 977
HphI GGTGA 2 cut(s) 49, 1242
Hpy166II GTNNAC 2 cut(s) 1231, 1250
Hpy188I TCNGA 4 cut(s) 337, 510, 1257, 1381
Hpy188III TCNNGA 6 cut(s) 160, 276, 421, 751, 1042, 1150
Hpy8I GTNNAC 2 cut(s) 1231, 1250
HpyAV CCTTC 2 cut(s) 11, 507
HpyCH4III ACNGT 2 cut(s) 70, 605
HpyF10VI GCNNNNNNNGC 4 cut(s) 89, 858, 1121, 1310
HpyF3I CTNAG 4 cut(s) 579, 1116, 1254, 1295
HspAI GCGC 2 cut(s) 462, 1113
Kpn2I TCCGGA 1 cut(s) 275
KpnI GGTACC 1 cut(s) 1072
Ksp22I TGATCA 1 cut(s) 1210
Kzo9I GATC 5 cut(s) 162, 423, 554, 655, 1210
LguI GCTCTTC 2 cut(s) 471, 1063
LmnI GCTCC 2 cut(s) 624, 1310
Lsp1109I GCAGC 3 cut(s) 413, 880, 1372
LweI GCATC 3 cut(s) 341, 711, 1351
MaeI CTAG 3 cut(s) 546, 885, 1190
MaeIII GTNAC 5 cut(s) 135, 282, 766, 899, 1168
MalI GATC 5 cut(s) 164, 425, 556, 657, 1212
MboI GATC 5 cut(s) 162, 423, 554, 655, 1210
MflI RGATCY 1 cut(s) 423
MhlI GDGCHC 4 cut(s) 44, 641, 809, 984
MluCI AATT 7 cut(s) 53, 84, 369, 856, 1103, 1340, 1390
MlyI GAGTC 2 cut(s) 1236, 1267
MmeI TCCRAC 2 cut(s) 602, 1359
MnlI CCTC 9 cut(s) 167, 219, 516, 528, 727, 1082, 1103, 1111, 1263
Mph1103I ATGCAT 2 cut(s) 1355, 1366
MroI TCCGGA 1 cut(s) 275
MroXI GAANNNNTTC 1 cut(s) 1057
MseI TTAA 5 cut(s) 144, 192, 632, 1221, 1393
MslI CAYNNNNRTG 3 cut(s) 255, 812, 1175
MspA1I CMGCKG 1 cut(s) 404
MspI CCGG 4 cut(s) 35, 276, 675, 977
MspR9I CCNGG 2 cut(s) 45, 977
MvaI CCWGG 1 cut(s) 45
MwoI GCNNNNNNNGC 4 cut(s) 89, 858, 1121, 1310
NciI CCSGG 1 cut(s) 977
NcoI CCATGG 1 cut(s) 1305
NdeI CATATG 1 cut(s) 295
NdeII GATC 5 cut(s) 162, 423, 554, 655, 1210
NlaIV GGNNCC 4 cut(s) 808, 930, 981, 1070
NmuCI GTSAC 4 cut(s) 135, 282, 766, 1168
NsiI ATGCAT 2 cut(s) 1355, 1366
NspI RCATGY 4 cut(s) 260, 823, 974, 1353
PaeI GCATGC 1 cut(s) 1353
PagI TCATGA 1 cut(s) 1149
PciI ACATGT 1 cut(s) 256
PciSI GCTCTTC 2 cut(s) 471, 1063
PdmI GAANNNNTTC 1 cut(s) 1057
PfeI GAWTC 3 cut(s) 122, 290, 1331
PkrI GCNGC 4 cut(s) 403, 895, 1126, 1387
PleI GAGTC 2 cut(s) 1235, 1266
PpsI GAGTC 2 cut(s) 1235, 1266
PscI ACATGT 1 cut(s) 256
Psp6I CCWGG 1 cut(s) 43
PspGI CCWGG 1 cut(s) 43
PspN4I GGNNCC 4 cut(s) 808, 930, 981, 1070
PspPI GGNCC 2 cut(s) 672, 1184
PsuI RGATCY 1 cut(s) 423
PvuII CAGCTG 1 cut(s) 404
RsaI GTAC 3 cut(s) 255, 818, 1070
RsaNI GTAC 3 cut(s) 254, 817, 1069
RseI CAYNNNNRTG 3 cut(s) 255, 812, 1175
SapI GCTCTTC 2 cut(s) 471, 1063
SaqAI TTAA 5 cut(s) 144, 192, 632, 1221, 1393
SatI GCNGC 4 cut(s) 402, 894, 1125, 1386
Sau3AI GATC 5 cut(s) 162, 423, 554, 655, 1210
Sau96I GGNCC 2 cut(s) 672, 1184
SchI GAGTC 2 cut(s) 1236, 1267
ScrFI CCNGG 2 cut(s) 45, 977
SduI GDGCHC 4 cut(s) 44, 641, 809, 984
SfaNI GCATC 3 cut(s) 341, 711, 1351
SinI GGWCC 1 cut(s) 672
SmiMI CAYNNNNRTG 3 cut(s) 255, 812, 1175
SmlI CTYRAG 1 cut(s) 1156
SmoI CTYRAG 1 cut(s) 1156
SpeI ACTAGT 1 cut(s) 545
SphI GCATGC 1 cut(s) 1353
Sse9I AATT 7 cut(s) 53, 84, 369, 856, 1103, 1340, 1390
SsiI CCGC 3 cut(s) 788, 896, 1124
SspI AATATT 1 cut(s) 417
SspMI CTAG 3 cut(s) 546, 885, 1190
StyD4I CCNGG 2 cut(s) 43, 975
StyI CCWWGG 2 cut(s) 436, 1305
TaaI ACNGT 2 cut(s) 70, 605
TaqI TCGA 4 cut(s) 553, 658, 713, 989
TasI AATT 7 cut(s) 53, 84, 369, 856, 1103, 1340, 1390
TatI WGTACW 2 cut(s) 253, 816
TauI GCSGC 1 cut(s) 1127
TfiI GAWTC 3 cut(s) 122, 290, 1331
Tru1I TTAA 5 cut(s) 144, 192, 632, 1221, 1393
Tru9I TTAA 5 cut(s) 144, 192, 632, 1221, 1393
TscAI CASTG 3 cut(s) 73, 224, 915
TseFI GTSAC 4 cut(s) 135, 282, 766, 1168
TseI GCWGC 3 cut(s) 401, 893, 1385
Tsp45I GTSAC 4 cut(s) 135, 282, 766, 1168
TspDTI ATGAA 9 cut(s) 219, 327, 362, 555, 845, 1127, 1166, 1315, 1370
TspGWI ACGGA 1 cut(s) 841
TspRI CASTG 3 cut(s) 73, 224, 915
VpaK11BI GGWCC 1 cut(s) 672
XapI RAATTY 2 cut(s) 369, 1103
XceI RCATGY 4 cut(s) 260, 823, 974, 1353
XcmI CCANNNNNNNNNTGG 1 cut(s) 434
XmiI GTMKAC 1 cut(s) 1230
XmnI GAANNNNTTC 1 cut(s) 1057
XspI CTAG 3 cut(s) 546, 885, 1190
Zsp2I ATGCAT 2 cut(s) 1355, 1366
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.