Rmu_sc0005634.1_g000003

isoform X1

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0005634.1
Physical Location & Seq
Forward (+)
12067 .. 15346
3280 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0005634.1_g000003.1.cds

Sequence Viewer

Length: 1698 bp
atggatacaagagtcaggacaaagctgcagtccatgaaagctccaaccaagatgaatgaaaaagatatcaaggtagaagaaatgctagggagtaaagaaaggaataccacaaaggcaatcagccttggaagagcttcaagaagagagagaaaattggctttacaacaagatgttgataagctgaagaagaagcttagacatgaagagaatgtgcacagagctttgcagagggcatttaatagacccctgggagctctacctcgcctaccgccttatctgcctccttatacattagagcttcttgctgaggttgctgttttggaagaggaagttgttcggcttgaagagcaagtagtgcatgttaggaagaacctatatcaggaagctgtcaacatatcaacttccaagaggagcttagaaacctcagctgaattatgtgattcacaccctaaaaagaatcctaaatttcaaggtcgaagagtggtcactgatacagcggtgaagcatttgccatcctcttctgatgataagcaggggaaagagaatcaatcatgtgatccctcaatgaagaacaacaagaaatccttgatccatagcaatgctcaggttaagacaccagtgaagagacctccaattgatatcaaaatagcacaaaagcgtttagattctccaaaactacagttagaagttagagtgacagaacaagacagcgcggaagtaagacttcctagtattccagaaaaaaatctatctggagatgacagcccaaacagaatatctgaaaatattctgaagtgcttatcaagcattctcctgagaatgagttctgcaaagagcactacagaaaaccagccttccttttcaacattaggaattcaagaaagcaatgaaagaccagaattttgggatccttatggtatctgttcagaatttggaaagagagatattggtccgtataagcaattatactcggttgaagcccgttctattaatcctaatcgaacagctagctctttgttcctgttccgaagattgaaattactgcttgggaaacttgcctctgtaaatttgaaaagcctcagtcatcaagagaagcttgcattctggatcaatatctacaattcctgtatgatgaatgctttcctagaacacggaataccagagaggcctgaaataattgtcgcactaatgcagaaggcaactataaatgttgggggacacttgctcgatgcaataactatagaacattttattttgagactgccgtatcactcaaaatataccttctccaagggtgcaaagaatgatgagaagacagcaagaagcattttcgcattggaattatctgaaccgttggtaacatttgctctatcatgtggaagctggtcctcccctgctgtgagagtttacactgcatcccaagttgagaatgaactagaagtcgcaaaaagagagtacttacaggctgcagtgggtatttcatcgaataagtttgcaattccaaagcttttggattggtacctacctgattttgcaaaggatctagaatcgttgctagactggatctgccttcagctacctagtgaactaggaaaagaagcaatcaagtttcttgaaggagccaaaactgatcctcattcacagtttgtccaaatcatgccctatgaattcagctttaggtatctactacacacatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

565

Amino Acids

64.19

Weight (kDa)

9.25

Isoelectric Point (pI)

52.81

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 1518
AccB1I GGYRCC 1 cut(s) 1518
AccII CGCG 1 cut(s) 713
AciI CCGC 3 cut(s) 269, 497, 713
AclWI GGATC 8 cut(s) 551, 583, 902, 915, 1115, 1548, 1571, 1625
AcsI RAATTY 6 cut(s) 464, 873, 899, 929, 1066, 1667
AcuI CTGAAG 3 cut(s) 203, 812, 1556
AfaI GTAC 2 cut(s) 1457, 1520
AfiI CCNNNNNNNGG 1 cut(s) 379
AgsI TTSAA 9 cut(s) 138, 344, 470, 864, 878, 977, 1036, 1072, 1616
AjnI CCWGG 1 cut(s) 246
Alw21I GWGCWC 3 cut(s) 216, 256, 839
Alw26I GTCTC 2 cut(s) 619, 1252
Alw44I GTGCAC 1 cut(s) 212
AlwI GGATC 8 cut(s) 551, 583, 902, 915, 1115, 1548, 1571, 1625
AoxI GGCC 1 cut(s) 1166
ApaLI GTGCAC 1 cut(s) 212
ApeKI GCWGC 2 cut(s) 25, 1466
ApoI RAATTY 6 cut(s) 464, 873, 899, 929, 1066, 1667
ArsI GACNNNNNNTTYG 4 cut(s) 14, 46, 885, 917
AseI ATTAAT 1 cut(s) 990
Asp700I GAANNNNTTC 5 cut(s) 133, 333, 786, 823, 1139
Asp718I GGTACC 1 cut(s) 1518
AspLEI GCGC 1 cut(s) 713
AspS9I GGNCC 2 cut(s) 950, 1386
AsuHPI GGTGA 1 cut(s) 511
AsuNHI GCTAGC 1 cut(s) 1007
AvaII GGWCC 2 cut(s) 950, 1386
BaeGI GKGCMC 1 cut(s) 216
BaeI ACNNNNGTAYC 5 cut(s) 30, 483, 516, 1250, 1283
BamHI GGATCC 1 cut(s) 907
BanI GGYRCC 1 cut(s) 1518
BanII GRGCYC 1 cut(s) 256
BbsI GAAGAC 1 cut(s) 1319
Bbv12I GWGCWC 3 cut(s) 216, 256, 839
BbvCI CCTCAGC 2 cut(s) 306, 424
BbvI GCAGC 2 cut(s) 12, 1453
BccI CCATC 1 cut(s) 520
BceAI ACGGC 1 cut(s) 1249
BciT130I CCWGG 1 cut(s) 248
BcoDI GTCTC 2 cut(s) 619, 1252
BfaI CTAG 9 cut(s) 86, 729, 1008, 1145, 1436, 1544, 1556, 1581, 1589
BfmI CTRYAG 5 cut(s) 26, 677, 840, 1239, 1467
BisI GCNGC 2 cut(s) 26, 1467
BlsI GCNGC 2 cut(s) 27, 1468
BmcAI AGTACT 1 cut(s) 1457
Bme1390I CCNGG 1 cut(s) 248
Bme18I GGWCC 2 cut(s) 950, 1386
BmgT120I GGNCC 2 cut(s) 950, 1386
BmiI GGNNCC 3 cut(s) 909, 1520, 1621
BmrFI CCNGG 1 cut(s) 248
BmsI GCATC 2 cut(s) 1219, 1424
BmtI GCTAGC 1 cut(s) 1011
BpiI GAAGAC 1 cut(s) 1319
BpmI CTGGAG 1 cut(s) 774
Bpu10I CCTNAGC 3 cut(s) 306, 424, 603
BsaBI GATNNNNATC 1 cut(s) 1112
BsaI GGTCTC 1 cut(s) 619
BsaJI CCNNGG 4 cut(s) 124, 246, 247, 1290
Bsc4I CCNNNNNNNGG 1 cut(s) 379
Bse1I ACTGG 2 cut(s) 617, 1565
Bse3DI GCAATG 2 cut(s) 604, 892
Bse8I GATNNNNATC 1 cut(s) 1112
BseBI CCWGG 1 cut(s) 248
BseDI CCNNGG 4 cut(s) 124, 246, 247, 1290
BseGI GGATG 2 cut(s) 512, 1415
BseJI GATNNNNATC 1 cut(s) 1112
BseLI CCNNNNNNNGG 1 cut(s) 379
BseMI GCAATG 2 cut(s) 604, 892
BseMII CTCAG 5 cut(s) 297, 438, 617, 806, 1093
BseNI ACTGG 2 cut(s) 617, 1565
BseRI GAGGAG 1 cut(s) 424
BseSI GKGCMC 1 cut(s) 216
BseXI GCAGC 2 cut(s) 12, 1453
Bsh1236I CGCG 1 cut(s) 713
BshFI GGCC 1 cut(s) 1168
BshNI GGYRCC 1 cut(s) 1518
BsiHKAI GWGCWC 3 cut(s) 216, 256, 839
BslFI GGGAC 1 cut(s) 1230
BslI CCNNNNNNNGG 1 cut(s) 379
BsmAI GTCTC 2 cut(s) 619, 1252
BsmFI GGGAC 1 cut(s) 1230
BsmI GAATGC 3 cut(s) 807, 1100, 1141
BsnI GGCC 1 cut(s) 1168
Bso31I GGTCTC 1 cut(s) 619
Bsp1286I GDGCHC 3 cut(s) 216, 256, 839
Bsp143I GATC 7 cut(s) 556, 588, 907, 1107, 1540, 1563, 1630
BspACI CCGC 3 cut(s) 269, 497, 713
BspANI GGCC 1 cut(s) 1168
BspCNI CTCAG 5 cut(s) 298, 437, 616, 807, 1092
BspFNI CGCG 1 cut(s) 713
BspLI GGNNCC 3 cut(s) 909, 1520, 1621
BspMAI CTGCAG 2 cut(s) 30, 1471
BspOI GCTAGC 1 cut(s) 1011
BspPI GGATC 8 cut(s) 551, 583, 902, 915, 1115, 1548, 1571, 1625
BspQI GCTCTTC 2 cut(s) 124, 339
BspT107I GGYRCC 1 cut(s) 1518
BspTNI GGTCTC 1 cut(s) 619
BsrDI GCAATG 2 cut(s) 604, 892
BsrI ACTGG 2 cut(s) 617, 1565
BssECI CCNNGG 4 cut(s) 124, 246, 247, 1290
BssMI GATC 7 cut(s) 556, 588, 907, 1107, 1540, 1563, 1630
BssT1I CCWWGG 2 cut(s) 124, 1290
Bst2UI CCWGG 1 cut(s) 248
Bst4CI ACNGT 3 cut(s) 681, 1353, 1644
Bst6I CTCTTC 8 cut(s) 124, 136, 198, 318, 339, 472, 523, 617
BstAPI GCANNNNNTGC 1 cut(s) 355
BstC8I GCNNGC 2 cut(s) 1009, 1098
BstDEI CTNAG 7 cut(s) 194, 306, 415, 424, 603, 815, 1079
BstENI CCTNNNNNAGG 1 cut(s) 377
BstF5I GGATG 2 cut(s) 512, 1415
BstFNI CGCG 1 cut(s) 713
BstHHI GCGC 1 cut(s) 713
BstKTI GATC 7 cut(s) 559, 591, 910, 1110, 1543, 1566, 1633
BstMAI GTCTC 2 cut(s) 619, 1252
BstMBI GATC 7 cut(s) 556, 588, 907, 1107, 1540, 1563, 1630
BstMWI GCNNNNNNNGC 5 cut(s) 277, 311, 346, 355, 804
BstNI CCWGG 1 cut(s) 248
BstNSI RCATGY 1 cut(s) 362
BstSCI CCNGG 1 cut(s) 246
BstSFI CTRYAG 5 cut(s) 26, 677, 840, 1239, 1467
BstSLI GKGCMC 1 cut(s) 216
BstUI CGCG 1 cut(s) 713
BstV1I GCAGC 2 cut(s) 12, 1453
BstV2I GAAGAC 1 cut(s) 1319
BstX2I RGATCY 3 cut(s) 907, 1540, 1563
BstXI CCANNNNNNTGG 1 cut(s) 903
BstYI RGATCY 3 cut(s) 907, 1540, 1563
BsuRI GGCC 1 cut(s) 1168
BtsCI GGATG 2 cut(s) 512, 1415
BtsI GCAGTG 2 cut(s) 1410, 1476
BtsIMutI CAGTG 4 cut(s) 486, 624, 1410, 1476
Cac8I GCNNGC 2 cut(s) 1009, 1098
CfoI GCGC 1 cut(s) 713
Cfr13I GGNCC 2 cut(s) 950, 1386
Csp6I GTAC 2 cut(s) 1456, 1519
CviAII CATG 7 cut(s) 34, 200, 359, 552, 1374, 1657, 1695
CviQI GTAC 2 cut(s) 1456, 1519
DdeI CTNAG 7 cut(s) 194, 306, 415, 424, 603, 815, 1079
DpnI GATC 7 cut(s) 558, 590, 909, 1109, 1542, 1565, 1632
DpnII GATC 7 cut(s) 556, 588, 907, 1107, 1540, 1563, 1630
Eam1104I CTCTTC 8 cut(s) 124, 136, 198, 318, 339, 472, 523, 617
EarI CTCTTC 8 cut(s) 124, 136, 198, 318, 339, 472, 523, 617
Ecl136II GAGCTC 1 cut(s) 254
Eco130I CCWWGG 2 cut(s) 124, 1290
Eco147I AGGCCT 1 cut(s) 1168
Eco24I GRGCYC 1 cut(s) 256
Eco31I GGTCTC 1 cut(s) 619
Eco32I GATATC 2 cut(s) 67, 640
Eco47I GGWCC 2 cut(s) 950, 1386
Eco53kI GAGCTC 1 cut(s) 254
Eco57I CTGAAG 3 cut(s) 203, 812, 1556
EcoICRI GAGCTC 1 cut(s) 254
EcoNI CCTNNNNNAGG 1 cut(s) 377
EcoRI GAATTC 2 cut(s) 873, 1667
EcoRII CCWGG 1 cut(s) 246
EcoRV GATATC 2 cut(s) 67, 640
EcoT14I CCWWGG 2 cut(s) 124, 1290
EcoT38I GRGCYC 1 cut(s) 256
ErhI CCWWGG 2 cut(s) 124, 1290
FaeI CATG 7 cut(s) 37, 203, 362, 555, 1377, 1660, 1698
FalI AAGNNNNNCTT 8 cut(s) 398, 430, 569, 601, 708, 740, 1080, 1112
FaqI GGGAC 1 cut(s) 1230
FatI CATG 7 cut(s) 33, 199, 358, 551, 1373, 1656, 1694
Fnu4HI GCNGC 2 cut(s) 26, 1467
FokI GGATG 2 cut(s) 499, 1402
FriOI GRGCYC 1 cut(s) 256
Fsp4HI GCNGC 2 cut(s) 26, 1467
FspBI CTAG 9 cut(s) 86, 729, 1008, 1145, 1436, 1544, 1556, 1581, 1589
GlaI GCGC 1 cut(s) 712
GluI GCNGC 2 cut(s) 26, 1467
GsuI CTGGAG 1 cut(s) 774
HaeIII GGCC 1 cut(s) 1168
HhaI GCGC 1 cut(s) 713
Hin1II CATG 7 cut(s) 37, 203, 362, 555, 1377, 1660, 1698
Hin6I GCGC 1 cut(s) 711
HinP1I GCGC 1 cut(s) 711
HincII GTYRAC 1 cut(s) 391
HindII GTYRAC 1 cut(s) 391
HindIII AAGCTT 3 cut(s) 191, 1094, 1505
HinfI GANTC 6 cut(s) 12, 440, 457, 544, 665, 1547
HphI GGTGA 1 cut(s) 511
Hpy166II GTNNAC 4 cut(s) 214, 391, 1408, 1586
Hpy188I TCNGA 6 cut(s) 523, 781, 792, 928, 1028, 1348
Hpy8I GTNNAC 4 cut(s) 214, 391, 1408, 1586
HpyAV CCTTC 5 cut(s) 864, 1189, 1294, 1580, 1610
HpyCH4III ACNGT 3 cut(s) 681, 1353, 1644
HpyF10VI GCNNNNNNNGC 5 cut(s) 277, 311, 346, 355, 804
HpyF3I CTNAG 7 cut(s) 194, 306, 415, 424, 603, 815, 1079
Hsp92II CATG 7 cut(s) 37, 203, 362, 555, 1377, 1660, 1698
HspAI GCGC 1 cut(s) 711
KpnI GGTACC 1 cut(s) 1522
Kzo9I GATC 7 cut(s) 556, 588, 907, 1107, 1540, 1563, 1630
LguI GCTCTTC 2 cut(s) 124, 339
LmnI GCTCC 4 cut(s) 46, 251, 411, 1619
Lsp1109I GCAGC 2 cut(s) 12, 1453
LweI GCATC 2 cut(s) 1219, 1424
MaeI CTAG 9 cut(s) 86, 729, 1008, 1145, 1436, 1544, 1556, 1581, 1589
MaeIII GTNAC 3 cut(s) 484, 694, 1357
MalI GATC 7 cut(s) 558, 590, 909, 1109, 1542, 1565, 1632
MboI GATC 7 cut(s) 556, 588, 907, 1107, 1540, 1563, 1630
MfeI CAATTG 1 cut(s) 633
MflI RGATCY 3 cut(s) 907, 1540, 1563
MhlI GDGCHC 3 cut(s) 216, 256, 839
MlyI GAGTC 1 cut(s) 21
MmeI TCCRAC 1 cut(s) 68
MroXI GAANNNNTTC 5 cut(s) 133, 333, 786, 823, 1139
MseI TTAA 3 cut(s) 237, 609, 990
MslI CAYNNNNRTG 1 cut(s) 597
MspA1I CMGCKG 2 cut(s) 428, 497
MspR9I CCNGG 1 cut(s) 248
MunI CAATTG 1 cut(s) 633
Mva1269I GAATGC 3 cut(s) 807, 1100, 1141
MvaI CCWGG 1 cut(s) 248
MvnI CGCG 1 cut(s) 713
MwoI GCNNNNNNNGC 5 cut(s) 277, 311, 346, 355, 804
NdeII GATC 7 cut(s) 556, 588, 907, 1107, 1540, 1563, 1630
NheI GCTAGC 1 cut(s) 1007
NlaIII CATG 7 cut(s) 37, 203, 362, 555, 1377, 1660, 1698
NlaIV GGNNCC 3 cut(s) 909, 1520, 1621
NmuCI GTSAC 2 cut(s) 484, 694
NspI RCATGY 1 cut(s) 362
PasI CCCWGGG 1 cut(s) 247
PceI AGGCCT 1 cut(s) 1168
PciSI GCTCTTC 2 cut(s) 124, 339
PctI GAATGC 3 cut(s) 807, 1100, 1141
PdmI GAANNNNTTC 5 cut(s) 133, 333, 786, 823, 1139
PfeI GAWTC 5 cut(s) 440, 457, 544, 665, 1547
PkrI GCNGC 2 cut(s) 27, 1468
PleI GAGTC 1 cut(s) 20
PpsI GAGTC 1 cut(s) 20
PshBI ATTAAT 1 cut(s) 990
Psp124BI GAGCTC 1 cut(s) 256
Psp6I CCWGG 1 cut(s) 246
PspGI CCWGG 1 cut(s) 246
PspN4I GGNNCC 3 cut(s) 909, 1520, 1621
PspPI GGNCC 2 cut(s) 950, 1386
PsrI GAACNNNNNNTAC 2 cut(s) 1140, 1172
PstI CTGCAG 2 cut(s) 30, 1471
PsuI RGATCY 3 cut(s) 907, 1540, 1563
PvuII CAGCTG 1 cut(s) 428
RsaI GTAC 2 cut(s) 1457, 1520
RsaNI GTAC 2 cut(s) 1456, 1519
RseI CAYNNNNRTG 1 cut(s) 597
SacI GAGCTC 1 cut(s) 256
SapI GCTCTTC 2 cut(s) 124, 339
SaqAI TTAA 3 cut(s) 237, 609, 990
SatI GCNGC 2 cut(s) 26, 1467
Sau3AI GATC 7 cut(s) 556, 588, 907, 1107, 1540, 1563, 1630
Sau96I GGNCC 2 cut(s) 950, 1386
ScaI AGTACT 1 cut(s) 1457
SchI GAGTC 1 cut(s) 21
ScrFI CCNGG 1 cut(s) 248
SduI GDGCHC 3 cut(s) 216, 256, 839
SfaNI GCATC 2 cut(s) 1219, 1424
SfcI CTRYAG 5 cut(s) 26, 677, 840, 1239, 1467
SinI GGWCC 2 cut(s) 950, 1386
SmiMI CAYNNNNRTG 1 cut(s) 597
SseBI AGGCCT 1 cut(s) 1168
SsiI CCGC 3 cut(s) 269, 497, 713
SspI AATATT 1 cut(s) 787
SspMI CTAG 9 cut(s) 86, 729, 1008, 1145, 1436, 1544, 1556, 1581, 1589
SstI GAGCTC 1 cut(s) 256
StuI AGGCCT 1 cut(s) 1168
StyD4I CCNGG 1 cut(s) 246
StyI CCWWGG 2 cut(s) 124, 1290
TaaI ACNGT 3 cut(s) 681, 1353, 1644
TaqI TCGA 4 cut(s) 475, 1000, 1227, 1484
TatI WGTACW 1 cut(s) 1455
TfiI GAWTC 5 cut(s) 440, 457, 544, 665, 1547
Tru1I TTAA 3 cut(s) 237, 609, 990
Tru9I TTAA 3 cut(s) 237, 609, 990
TscAI CASTG 4 cut(s) 493, 624, 1417, 1476
TseFI GTSAC 2 cut(s) 484, 694
TseI GCWGC 2 cut(s) 25, 1466
Tsp45I GTSAC 2 cut(s) 484, 694
TspGWI ACGGA 2 cut(s) 942, 1167
TspRI CASTG 4 cut(s) 493, 624, 1417, 1476
VneI GTGCAC 1 cut(s) 212
VpaK11BI GGWCC 2 cut(s) 950, 1386
VspI ATTAAT 1 cut(s) 990
XagI CCTNNNNNAGG 1 cut(s) 377
XapI RAATTY 6 cut(s) 464, 873, 899, 929, 1066, 1667
XbaI TCTAGA 1 cut(s) 1543
XceI RCATGY 1 cut(s) 362
XmnI GAANNNNTTC 5 cut(s) 133, 333, 786, 823, 1139
XspI CTAG 9 cut(s) 86, 729, 1008, 1145, 1436, 1544, 1556, 1581, 1589
ZrmI AGTACT 1 cut(s) 1457
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.