Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0003187

Physical Location & Seq

Genomic Coordinates Reverse (-)

50323440 .. 50326147

Gene Structure 2708 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0355800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 453 bp

ATGGAGATGGCAGCTGAGAATGCCAAGAGTGGGATAAAGAGGTTCTTGGAACAATCCACAGGTGACCGAGTTGATCAAGGAGATTCTGAATGTAGTCATGTCAGATCAAAGAGATTGAAAACAAAAGAAAAAGAAGAAGATTTGCTGAGGGAAAACTTAGAGAGGAGGAAGGGATGTCTTAGTCGATTTCAGTCTGTTCCTAATTTTGGAATTTCCGTTTCACATTCAAAGTTTCAATCTTTAAAGGCAATGGAAGAGATGAATTTTGCAGGCAATGGAAGTCTCGCTTTATATATAAAGATTAAAGCCAAAGCAGCCACCGAGGCCTCTCCATTTCCATGGCTTCAGTCTCCCCAAGCTAAAGACACCCCCTCTGAGGTGGACACAGCAATGACTTGCAGGATATGGAGACCGAAAAAGTTGAACACTGACAAATATGATGGGCTTCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF547 Lzipper-MIP1

Protein Analysis

150

Amino Acids

16.97

Weight (kDa)

9.15

Isoelectric Point (pI)

54.71

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0003187)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G42690 AT5G42690 AT5G42690 AT5G42690 AT5G42690
fragaria_vesca	FvH4_2g34930 FvH4_2g34930 FvH4_2g34930 FvH4_2g34930 FvH4_2g34930 FvH4_2g34930 FvH4_2g34930 FvH4_2g34930 FvH4_2g34930 FvH4_2g34930 FvH4_2g34930
malus_domestica	MD08G1106800.v1.1 MD15G1087500.v1.1
prunus_persica	Prupe.1G441200_v2.0.a1 Prupe.1G441200_v2.0.a1 Prupe.1G441200_v2.0.a1 Prupe.1G441200_v2.0.a1
pyrus_communis	pycom08g08840 pycom15g08230
rosa_chinensis	RchiOBHm_Chr6g0307071
rosa_laevigata	RLG00000010736
rosa_multiflora	Rmu_sc0005634.1_g000003
rosa_roxburghii	Rroxscaffold_7G00161180
rosa_rugosa	Rorug06G0355700 Rorug06G0355800 Rorug06G0355900 Rorug06G0356000
rosa_samantha	Rh6AG467200 Rh6BG433300 Rh6CG482700 Rh6DG469000
rosa_wichuraiana	Rw6G040730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	2 cut(s)	210, 262
AcuI	CTGAAG	1 cut(s)	329
AfiI	CCNNNNNNNGG	3 cut(s)	30, 206, 376
AgsI	TTSAA	4 cut(s)	118, 228, 236, 424
AluBI	AGCT	2 cut(s)	14, 359
AluI	AGCT	2 cut(s)	14, 359
Alw26I	GTCTC	3 cut(s)	287, 354, 403
AoxI	GGCC	1 cut(s)	324
ApeKI	GCWGC	2 cut(s)	11, 314
ApoI	RAATTY	2 cut(s)	210, 262
AsuHPI	GGTGA	1 cut(s)	74
BbvCI	CCTCAGC	1 cut(s)	146
BbvI	GCAGC	2 cut(s)	23, 326
BccI	CCATC	1 cut(s)	434
BclI	TGATCA	1 cut(s)	73
BcoDI	GTCTC	3 cut(s)	287, 354, 403
BglI	GCCNNNNNGGC	1 cut(s)	323
BisI	GCNGC	2 cut(s)	12, 315
BlsI	GCNGC	2 cut(s)	13, 316
Bpu10I	CCTNAGC	1 cut(s)	146
BsaI	GGTCTC	1 cut(s)	403
BsaJI	CCNNGG	2 cut(s)	321, 338
Bsc4I	CCNNNNNNNGG	3 cut(s)	30, 206, 376
Bse3DI	GCAATG	3 cut(s)	255, 280, 396
BseDI	CCNNGG	2 cut(s)	321, 338
BseGI	GGATG	1 cut(s)	179
BseLI	CCNNNNNNNGG	3 cut(s)	30, 206, 376
BseMI	GCAATG	3 cut(s)	255, 280, 396
BseMII	CTCAG	3 cut(s)	6, 137, 366
BseRI	GAGGAG	1 cut(s)	178
BseXI	GCAGC	2 cut(s)	23, 326
BshFI	GGCC	1 cut(s)	326
BslI	CCNNNNNNNGG	3 cut(s)	30, 206, 376
BsmAI	GTCTC	3 cut(s)	287, 354, 403
BsmI	GAATGC	1 cut(s)	25
BsnI	GGCC	1 cut(s)	326
Bso31I	GGTCTC	1 cut(s)	403
Bsp143I	GATC	2 cut(s)	73, 104
Bsp19I	CCATGG	1 cut(s)	338
BspANI	GGCC	1 cut(s)	326
BspCNI	CTCAG	3 cut(s)	7, 138, 367
BspTNI	GGTCTC	1 cut(s)	403
BsrDI	GCAATG	3 cut(s)	255, 280, 396
BssECI	CCNNGG	2 cut(s)	321, 338
BssMI	GATC	2 cut(s)	73, 104
BssT1I	CCWWGG	1 cut(s)	338
Bst6I	CTCTTC	1 cut(s)	249
BstC8I	GCNNGC	1 cut(s)	271
BstDEI	CTNAG	5 cut(s)	15, 146, 157, 179, 375
BstDSI	CCRYGG	1 cut(s)	338
BstEII	GGTNACC	1 cut(s)	62
BstF5I	GGATG	1 cut(s)	179
BstKTI	GATC	2 cut(s)	76, 107
BstMAI	GTCTC	3 cut(s)	287, 354, 403
BstMBI	GATC	2 cut(s)	73, 104
BstMWI	GCNNNNNNNGC	3 cut(s)	20, 314, 323
BstPI	GGTNACC	1 cut(s)	62
BstV1I	GCAGC	2 cut(s)	23, 326
BstXI	CCANNNNNNTGG	1 cut(s)	339
BsuRI	GGCC	1 cut(s)	326
BtgI	CCRYGG	1 cut(s)	338
BtsCI	GGATG	1 cut(s)	179
BtsIMutI	CAGTG	1 cut(s)	426
Cac8I	GCNNGC	1 cut(s)	271
CviAII	CATG	2 cut(s)	98, 339
CviJI	RGCY	7 cut(s)	14, 308, 317, 326, 343, 359, 445
CviKI_1	RGCY	7 cut(s)	14, 308, 317, 326, 343, 359, 445
DdeI	CTNAG	5 cut(s)	15, 146, 157, 179, 375
DpnI	GATC	2 cut(s)	75, 106
DpnII	GATC	2 cut(s)	73, 104
DraI	TTTAAA	1 cut(s)	243
Eam1104I	CTCTTC	1 cut(s)	249
EarI	CTCTTC	1 cut(s)	249
Eco130I	CCWWGG	1 cut(s)	338
Eco147I	AGGCCT	1 cut(s)	326
Eco31I	GGTCTC	1 cut(s)	403
Eco57I	CTGAAG	1 cut(s)	329
Eco91I	GGTNACC	1 cut(s)	62
EcoO65I	GGTNACC	1 cut(s)	62
EcoT14I	CCWWGG	1 cut(s)	338
ErhI	CCWWGG	1 cut(s)	338
FaeI	CATG	2 cut(s)	101, 342
FaiI	YATR	7 cut(s)	99, 292, 294, 296, 340, 406, 438
FalI	AAGNNNNNCTT	4 cut(s)	29, 61, 271, 303
FatI	CATG	2 cut(s)	97, 338
FbaI	TGATCA	1 cut(s)	73
Fnu4HI	GCNGC	2 cut(s)	12, 315
FokI	GGATG	1 cut(s)	186
Fsp4HI	GCNGC	2 cut(s)	12, 315
GluI	GCNGC	2 cut(s)	12, 315
HaeIII	GGCC	1 cut(s)	326
Hin1II	CATG	2 cut(s)	101, 342
HinfI	GANTC	1 cut(s)	83
HphI	GGTGA	1 cut(s)	74
Hpy166II	GTNNAC	1 cut(s)	382
Hpy188I	TCNGA	3 cut(s)	88, 104, 376
Hpy8I	GTNNAC	1 cut(s)	382
HpyAV	CCTTC	1 cut(s)	163
HpyCH4V	TGCA	2 cut(s)	269, 399
HpyF10VI	GCNNNNNNNGC	3 cut(s)	20, 314, 323
HpyF3I	CTNAG	5 cut(s)	15, 146, 157, 179, 375
Hsp92II	CATG	2 cut(s)	101, 342
Ksp22I	TGATCA	1 cut(s)	73
Kzo9I	GATC	2 cut(s)	73, 104
LpnPI	CCDG	3 cut(s)	45, 255, 385
Lsp1109I	GCAGC	2 cut(s)	23, 326
MaeIII	GTNAC	1 cut(s)	62
MalI	GATC	2 cut(s)	75, 106
MboI	GATC	2 cut(s)	73, 104
MboII	GAAGA	3 cut(s)	146, 149, 266
MluCI	AATT	3 cut(s)	202, 210, 262
MnlI	CCTC	8 cut(s)	33, 141, 156, 159, 316, 337, 370, 382
MseI	TTAA	2 cut(s)	242, 303
MslI	CAYNNNNRTG	2 cut(s)	337, 389
MspA1I	CMGCKG	1 cut(s)	14
Mva1269I	GAATGC	1 cut(s)	25
MwoI	GCNNNNNNNGC	3 cut(s)	20, 314, 323
NcoI	CCATGG	1 cut(s)	338
NdeII	GATC	2 cut(s)	73, 104
NlaIII	CATG	2 cut(s)	101, 342
NmuCI	GTSAC	1 cut(s)	62
PceI	AGGCCT	1 cut(s)	326
PctI	GAATGC	1 cut(s)	25
PfeI	GAWTC	1 cut(s)	83
PkrI	GCNGC	2 cut(s)	13, 316
PspEI	GGTNACC	1 cut(s)	62
PvuII	CAGCTG	1 cut(s)	14
RseI	CAYNNNNRTG	2 cut(s)	337, 389
SaqAI	TTAA	2 cut(s)	242, 303
SatI	GCNGC	2 cut(s)	12, 315
Sau3AI	GATC	2 cut(s)	73, 104
SetI	ASST	5 cut(s)	16, 44, 64, 361, 381
SmiMI	CAYNNNNRTG	2 cut(s)	337, 389
Sse9I	AATT	3 cut(s)	202, 210, 262
SseBI	AGGCCT	1 cut(s)	326
StuI	AGGCCT	1 cut(s)	326
StyI	CCWWGG	1 cut(s)	338
TaqI	TCGA	1 cut(s)	184
TaqII	GACCGA	2 cut(s)	81, 427
TasI	AATT	3 cut(s)	202, 210, 262
TfiI	GAWTC	1 cut(s)	83
Tru1I	TTAA	2 cut(s)	242, 303
Tru9I	TTAA	2 cut(s)	242, 303
TscAI	CASTG	1 cut(s)	433
TseFI	GTSAC	1 cut(s)	62
TseI	GCWGC	2 cut(s)	11, 314
Tsp45I	GTSAC	1 cut(s)	62
TspDTI	ATGAA	2 cut(s)	275, 437
TspGWI	ACGGA	1 cut(s)	205
TspRI	CASTG	1 cut(s)	433
XapI	RAATTY	2 cut(s)	210, 262

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.