Rh6CG482700

isoform X1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0003187
Physical Location & Seq
Reverse (-)
64910564 .. 64914619
4056 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG482700.1

Sequence Viewer

Length: 1320 bp
ATGGATACAAGAGTCAGGACAAAGCTGCAGTCCATGAAAGCTCCAACCAAGATGAATGAAAAAGATATCAAGGTAGAAGAAATGCTAGGGAGTAAAGAAAGGAATACCACAAAGGCAATAAGCCTTGGAAGAGCTTCAAGAAGAGAGAGAAAATTGGCTTTACAACAAGATGTTGATAAGCTGAAGAAGAAGCTTAGACATGAAGAGAATGTGCACAGAGCTTTGCAGAGGGCATTTAATAGACCCCTGGGAGCTCTACCTCGTCTACCGCCTTATCTGCCTCCTTATACATTAGAGCTTCTTGCTGAGGTTGCTGTTTTGGAAGAGGAAGTTGTTCGGCTTGAAGAGCAAGTAGTGCATGTTAGGAAGAACCTATATCAGGAAGCTGTCAACATATCAACTTCCAAGAGGAGCTTAGAAACCTCAGCTGAATTATGTGATTCACACCCTAAAAAGAATCCTAAATTTCAAGGTCGAAGAGTGGTCACTGATACAGCGGTGAAGCATTTGCCACCCTCTTCTGATGATAAGCAGGGGAAAGAGAATCAATCATGTGATCCCTCAATGAAGAACAACAAGAAATCCTTGATCCATAGCAATACTCAGGTTAAGACTCCAGTGAAGAGACCTCCAATTGATATCAAAATAGCACAAAAGTGTTTAGATTCTCCAAAACTACAGTTAGAAGTTAGAGTGACAGAACAAGACAGCGCGGAAGTAAGACTTCCTAGTATTCCAGAAAAAAATCTATCTGGAGATGACAACCCAAACAGAATATCTGAAAATATTCTGAAGTGCTTATCAAGCATTCTCCTGAGAATGAGTTCAGCAAAGGGCACTACAGAAAACCAGCCTTCCTTTTCAACATTAGGAATTCAAGAAAGCAATGAAAGACCAGAATTTTGGGATCCTTATGGTATCTGTTCAGAATTTGGAAAGAGAGATATTGGTCCGTATAAGCAATTATACTCAGTTGAAGCCCGTTCTATTAATCCTAACCGAACAGCTAGCTCTTTGTTCCTGTTCCGAAGATTGAAATTACTGCTTGGGAAACTTGCCTCTGTAAATTTGAAACGCCTCAGTCATCAAGAGAAGCTTGCATTCTGGATCAATATCTACAATTCCTGTATGATGAATGCTTTCCTAGAACACGGAATACCAGAGAGGCCTGAAATAATTGTCGCACTAATGCAGAAGGCAACTATAAATGTTGGGGGACACTTGCTCGATGCAATAACTATAGAACATTTTATTTTGAGACTGCCGTATCACTCAAAATATGTAAGTAGTACTGGTGTCCACCTTCAGAACTTCTACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF547 Lzipper-MIP1

Protein Analysis

439

Amino Acids

50.01

Weight (kDa)

9.57

Isoelectric Point (pI)

55.46

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Lzipper-MIP1 PF14389 47 - 128 7.4e-23 Leucine-zipper of ternary complex factor MIP1
DUF547 PF04784 358 - 423 3e-19 Protein of unknown function, DUF547
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 265
AccII CGCG 1 cut(s) 713
AciI CCGC 3 cut(s) 269, 497, 713
AclWI GGATC 5 cut(s) 551, 583, 902, 915, 1115
AcsI RAATTY 5 cut(s) 464, 873, 899, 929, 1066
AcuI CTGAAG 3 cut(s) 203, 812, 1289
AfaI GTAC 1 cut(s) 1291
AfiI CCNNNNNNNGG 1 cut(s) 379
AgsI TTSAA 8 cut(s) 138, 344, 470, 864, 878, 977, 1036, 1072
AjnI CCWGG 1 cut(s) 246
AleI CACNNNNGTG 1 cut(s) 655
Alw21I GWGCWC 2 cut(s) 216, 256
Alw26I GTCTC 2 cut(s) 619, 1252
Alw44I GTGCAC 1 cut(s) 212
AlwI GGATC 5 cut(s) 551, 583, 902, 915, 1115
AoxI GGCC 1 cut(s) 1166
ApaLI GTGCAC 1 cut(s) 212
ApeKI GCWGC 1 cut(s) 25
ApoI RAATTY 5 cut(s) 464, 873, 899, 929, 1066
ArsI GACNNNNNNTTYG 4 cut(s) 14, 46, 885, 917
AseI ATTAAT 1 cut(s) 990
Asp700I GAANNNNTTC 5 cut(s) 133, 333, 786, 823, 1139
AspLEI GCGC 1 cut(s) 713
AspS9I GGNCC 1 cut(s) 950
AsuHPI GGTGA 1 cut(s) 511
AsuNHI GCTAGC 1 cut(s) 1007
AvaII GGWCC 1 cut(s) 950
BaeGI GKGCMC 2 cut(s) 216, 839
BaeI ACNNNNGTAYC 5 cut(s) 30, 483, 516, 1250, 1283
BamHI GGATCC 1 cut(s) 907
BanII GRGCYC 1 cut(s) 256
Bbv12I GWGCWC 2 cut(s) 216, 256
BbvCI CCTCAGC 2 cut(s) 306, 424
BbvI GCAGC 1 cut(s) 12
BceAI ACGGC 1 cut(s) 1249
BciT130I CCWGG 1 cut(s) 248
BcoDI GTCTC 2 cut(s) 619, 1252
BfaI CTAG 4 cut(s) 86, 729, 1008, 1145
BfmI CTRYAG 4 cut(s) 26, 677, 840, 1239
BisI GCNGC 1 cut(s) 26
BlsI GCNGC 1 cut(s) 27
BmcAI AGTACT 1 cut(s) 1291
Bme1390I CCNGG 1 cut(s) 248
Bme18I GGWCC 1 cut(s) 950
BmgT120I GGNCC 1 cut(s) 950
BmiI GGNNCC 1 cut(s) 909
BmrFI CCNGG 1 cut(s) 248
BmsI GCATC 1 cut(s) 1219
BmtI GCTAGC 1 cut(s) 1011
BpmI CTGGAG 2 cut(s) 600, 774
Bpu10I CCTNAGC 2 cut(s) 306, 424
BsaBI GATNNNNATC 1 cut(s) 1112
BsaI GGTCTC 1 cut(s) 619
BsaJI CCNNGG 3 cut(s) 124, 246, 247
Bsc4I CCNNNNNNNGG 1 cut(s) 379
Bse1I ACTGG 2 cut(s) 617, 1297
Bse3DI GCAATG 1 cut(s) 892
Bse8I GATNNNNATC 1 cut(s) 1112
BseBI CCWGG 1 cut(s) 248
BseDI CCNNGG 3 cut(s) 124, 246, 247
BseJI GATNNNNATC 1 cut(s) 1112
BseLI CCNNNNNNNGG 1 cut(s) 379
BseMI GCAATG 1 cut(s) 892
BseMII CTCAG 6 cut(s) 297, 438, 617, 806, 984, 1093
BseNI ACTGG 2 cut(s) 617, 1297
BseRI GAGGAG 1 cut(s) 424
BseSI GKGCMC 2 cut(s) 216, 839
BseXI GCAGC 1 cut(s) 12
Bsh1236I CGCG 1 cut(s) 713
BshFI GGCC 1 cut(s) 1168
BsiHKAI GWGCWC 2 cut(s) 216, 256
BslFI GGGAC 1 cut(s) 1230
BslI CCNNNNNNNGG 1 cut(s) 379
BsmAI GTCTC 2 cut(s) 619, 1252
BsmFI GGGAC 1 cut(s) 1230
BsmI GAATGC 3 cut(s) 807, 1100, 1141
BsnI GGCC 1 cut(s) 1168
Bso31I GGTCTC 1 cut(s) 619
Bsp1286I GDGCHC 3 cut(s) 216, 256, 839
Bsp143I GATC 4 cut(s) 556, 588, 907, 1107
BspACI CCGC 3 cut(s) 269, 497, 713
BspANI GGCC 1 cut(s) 1168
BspCNI CTCAG 6 cut(s) 298, 437, 616, 807, 983, 1092
BspFNI CGCG 1 cut(s) 713
BspLI GGNNCC 1 cut(s) 909
BspMAI CTGCAG 1 cut(s) 30
BspOI GCTAGC 1 cut(s) 1011
BspPI GGATC 5 cut(s) 551, 583, 902, 915, 1115
BspQI GCTCTTC 2 cut(s) 124, 339
BspTNI GGTCTC 1 cut(s) 619
BsrDI GCAATG 1 cut(s) 892
BsrI ACTGG 2 cut(s) 617, 1297
BssECI CCNNGG 3 cut(s) 124, 246, 247
BssMI GATC 4 cut(s) 556, 588, 907, 1107
BssT1I CCWWGG 1 cut(s) 124
Bst2UI CCWGG 1 cut(s) 248
Bst4CI ACNGT 1 cut(s) 681
Bst6I CTCTTC 8 cut(s) 124, 136, 198, 318, 339, 472, 523, 617
BstAPI GCANNNNNTGC 1 cut(s) 355
BstC8I GCNNGC 2 cut(s) 1009, 1098
BstDEI CTNAG 8 cut(s) 194, 306, 415, 424, 603, 815, 970, 1079
BstENI CCTNNNNNAGG 1 cut(s) 377
BstFNI CGCG 1 cut(s) 713
BstHHI GCGC 1 cut(s) 713
BstKTI GATC 4 cut(s) 559, 591, 910, 1110
BstMAI GTCTC 2 cut(s) 619, 1252
BstMBI GATC 4 cut(s) 556, 588, 907, 1107
BstMWI GCNNNNNNNGC 5 cut(s) 277, 311, 346, 355, 804
BstNI CCWGG 1 cut(s) 248
BstNSI RCATGY 1 cut(s) 362
BstSCI CCNGG 1 cut(s) 246
BstSFI CTRYAG 4 cut(s) 26, 677, 840, 1239
BstSLI GKGCMC 2 cut(s) 216, 839
BstUI CGCG 1 cut(s) 713
BstV1I GCAGC 1 cut(s) 12
BstX2I RGATCY 1 cut(s) 907
BstXI CCANNNNNNTGG 1 cut(s) 903
BstYI RGATCY 1 cut(s) 907
BsuRI GGCC 1 cut(s) 1168
BtsIMutI CAGTG 2 cut(s) 486, 624
Cac8I GCNNGC 2 cut(s) 1009, 1098
CfoI GCGC 1 cut(s) 713
Cfr13I GGNCC 1 cut(s) 950
Csp6I GTAC 1 cut(s) 1290
CviAII CATG 4 cut(s) 34, 200, 359, 552
CviQI GTAC 1 cut(s) 1290
DdeI CTNAG 8 cut(s) 194, 306, 415, 424, 603, 815, 970, 1079
DpnI GATC 4 cut(s) 558, 590, 909, 1109
DpnII GATC 4 cut(s) 556, 588, 907, 1107
Eam1104I CTCTTC 8 cut(s) 124, 136, 198, 318, 339, 472, 523, 617
EarI CTCTTC 8 cut(s) 124, 136, 198, 318, 339, 472, 523, 617
Ecl136II GAGCTC 1 cut(s) 254
Eco130I CCWWGG 1 cut(s) 124
Eco147I AGGCCT 1 cut(s) 1168
Eco24I GRGCYC 1 cut(s) 256
Eco31I GGTCTC 1 cut(s) 619
Eco32I GATATC 2 cut(s) 67, 640
Eco47I GGWCC 1 cut(s) 950
Eco53kI GAGCTC 1 cut(s) 254
Eco57I CTGAAG 3 cut(s) 203, 812, 1289
EcoICRI GAGCTC 1 cut(s) 254
EcoNI CCTNNNNNAGG 1 cut(s) 377
EcoRI GAATTC 1 cut(s) 873
EcoRII CCWGG 1 cut(s) 246
EcoRV GATATC 2 cut(s) 67, 640
EcoT14I CCWWGG 1 cut(s) 124
EcoT38I GRGCYC 1 cut(s) 256
ErhI CCWWGG 1 cut(s) 124
FaeI CATG 4 cut(s) 37, 203, 362, 555
FalI AAGNNNNNCTT 8 cut(s) 398, 430, 569, 601, 708, 740, 1080, 1112
FaqI GGGAC 1 cut(s) 1230
FatI CATG 4 cut(s) 33, 199, 358, 551
FblI GTMKAC 1 cut(s) 265
Fnu4HI GCNGC 1 cut(s) 26
FriOI GRGCYC 1 cut(s) 256
Fsp4HI GCNGC 1 cut(s) 26
FspBI CTAG 4 cut(s) 86, 729, 1008, 1145
GlaI GCGC 1 cut(s) 712
GluI GCNGC 1 cut(s) 26
GsuI CTGGAG 2 cut(s) 600, 774
HaeIII GGCC 1 cut(s) 1168
HhaI GCGC 1 cut(s) 713
Hin1II CATG 4 cut(s) 37, 203, 362, 555
Hin6I GCGC 1 cut(s) 711
HinP1I GCGC 1 cut(s) 711
HincII GTYRAC 1 cut(s) 391
HindII GTYRAC 1 cut(s) 391
HindIII AAGCTT 2 cut(s) 191, 1094
HinfI GANTC 6 cut(s) 12, 440, 457, 544, 613, 665
HphI GGTGA 1 cut(s) 511
Hpy166II GTNNAC 4 cut(s) 214, 266, 391, 1300
Hpy188I TCNGA 6 cut(s) 523, 781, 792, 928, 1028, 1308
Hpy188III TCNNGA 9 cut(s) 16, 138, 380, 737, 753, 814, 878, 1088, 1105
Hpy8I GTNNAC 4 cut(s) 214, 266, 391, 1300
HpyAV CCTTC 3 cut(s) 864, 1189, 1313
HpyCH4III ACNGT 1 cut(s) 681
HpyCH4V TGCA 7 cut(s) 28, 214, 226, 358, 1100, 1192, 1232
HpyF10VI GCNNNNNNNGC 5 cut(s) 277, 311, 346, 355, 804
HpyF3I CTNAG 8 cut(s) 194, 306, 415, 424, 603, 815, 970, 1079
Hsp92II CATG 4 cut(s) 37, 203, 362, 555
HspAI GCGC 1 cut(s) 711
Kzo9I GATC 4 cut(s) 556, 588, 907, 1107
LguI GCTCTTC 2 cut(s) 124, 339
LmnI GCTCC 3 cut(s) 46, 251, 411
Lsp1109I GCAGC 1 cut(s) 12
LweI GCATC 1 cut(s) 1219
MaeI CTAG 4 cut(s) 86, 729, 1008, 1145
MaeIII GTNAC 2 cut(s) 484, 694
MalI GATC 4 cut(s) 558, 590, 909, 1109
MboI GATC 4 cut(s) 556, 588, 907, 1107
MfeI CAATTG 1 cut(s) 633
MflI RGATCY 1 cut(s) 907
MhlI GDGCHC 3 cut(s) 216, 256, 839
MlyI GAGTC 2 cut(s) 21, 607
MmeI TCCRAC 1 cut(s) 68
MroXI GAANNNNTTC 5 cut(s) 133, 333, 786, 823, 1139
MseI TTAA 3 cut(s) 237, 609, 990
MslI CAYNNNNRTG 1 cut(s) 655
MspA1I CMGCKG 2 cut(s) 428, 497
MspR9I CCNGG 1 cut(s) 248
MunI CAATTG 1 cut(s) 633
Mva1269I GAATGC 3 cut(s) 807, 1100, 1141
MvaI CCWGG 1 cut(s) 248
MvnI CGCG 1 cut(s) 713
MwoI GCNNNNNNNGC 5 cut(s) 277, 311, 346, 355, 804
NdeII GATC 4 cut(s) 556, 588, 907, 1107
NheI GCTAGC 1 cut(s) 1007
NlaIII CATG 4 cut(s) 37, 203, 362, 555
NlaIV GGNNCC 1 cut(s) 909
NmuCI GTSAC 2 cut(s) 484, 694
NspI RCATGY 1 cut(s) 362
OliI CACNNNNGTG 1 cut(s) 655
PasI CCCWGGG 1 cut(s) 247
PceI AGGCCT 1 cut(s) 1168
PciSI GCTCTTC 2 cut(s) 124, 339
PctI GAATGC 3 cut(s) 807, 1100, 1141
PdmI GAANNNNTTC 5 cut(s) 133, 333, 786, 823, 1139
PfeI GAWTC 4 cut(s) 440, 457, 544, 665
PkrI GCNGC 1 cut(s) 27
PleI GAGTC 2 cut(s) 20, 607
PpsI GAGTC 2 cut(s) 20, 607
PshBI ATTAAT 1 cut(s) 990
Psp124BI GAGCTC 1 cut(s) 256
Psp6I CCWGG 1 cut(s) 246
PspGI CCWGG 1 cut(s) 246
PspN4I GGNNCC 1 cut(s) 909
PspPI GGNCC 1 cut(s) 950
PsrI GAACNNNNNNTAC 2 cut(s) 1140, 1172
PstI CTGCAG 1 cut(s) 30
PsuI RGATCY 1 cut(s) 907
PvuII CAGCTG 1 cut(s) 428
RsaI GTAC 1 cut(s) 1291
RsaNI GTAC 1 cut(s) 1290
RseI CAYNNNNRTG 1 cut(s) 655
SacI GAGCTC 1 cut(s) 256
SapI GCTCTTC 2 cut(s) 124, 339
SaqAI TTAA 3 cut(s) 237, 609, 990
SatI GCNGC 1 cut(s) 26
Sau3AI GATC 4 cut(s) 556, 588, 907, 1107
Sau96I GGNCC 1 cut(s) 950
ScaI AGTACT 1 cut(s) 1291
SchI GAGTC 2 cut(s) 21, 607
ScrFI CCNGG 1 cut(s) 248
SduI GDGCHC 3 cut(s) 216, 256, 839
SfaNI GCATC 1 cut(s) 1219
SfcI CTRYAG 4 cut(s) 26, 677, 840, 1239
SinI GGWCC 1 cut(s) 950
SmiMI CAYNNNNRTG 1 cut(s) 655
SseBI AGGCCT 1 cut(s) 1168
SsiI CCGC 3 cut(s) 269, 497, 713
SspI AATATT 1 cut(s) 787
SspMI CTAG 4 cut(s) 86, 729, 1008, 1145
SstI GAGCTC 1 cut(s) 256
StuI AGGCCT 1 cut(s) 1168
StyD4I CCNGG 1 cut(s) 246
StyI CCWWGG 1 cut(s) 124
TaaI ACNGT 1 cut(s) 681
TaqI TCGA 2 cut(s) 475, 1227
TatI WGTACW 1 cut(s) 1289
TfiI GAWTC 4 cut(s) 440, 457, 544, 665
Tru1I TTAA 3 cut(s) 237, 609, 990
Tru9I TTAA 3 cut(s) 237, 609, 990
TscAI CASTG 2 cut(s) 493, 624
TseFI GTSAC 2 cut(s) 484, 694
TseI GCWGC 1 cut(s) 25
Tsp45I GTSAC 2 cut(s) 484, 694
TspDTI ATGAA 7 cut(s) 50, 68, 72, 216, 581, 903, 1148
TspGWI ACGGA 2 cut(s) 942, 1167
TspRI CASTG 2 cut(s) 493, 624
VneI GTGCAC 1 cut(s) 212
VpaK11BI GGWCC 1 cut(s) 950
VspI ATTAAT 1 cut(s) 990
XagI CCTNNNNNAGG 1 cut(s) 377
XapI RAATTY 5 cut(s) 464, 873, 899, 929, 1066
XceI RCATGY 1 cut(s) 362
XmiI GTMKAC 1 cut(s) 265
XmnI GAANNNNTTC 5 cut(s) 133, 333, 786, 823, 1139
XspI CTAG 4 cut(s) 86, 729, 1008, 1145
ZrmI AGTACT 1 cut(s) 1291
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.