FvH4_2g34930

isoform X1

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
Physical Location & Seq
Forward (+)
25851652 .. 25855668
4017 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g34930.t2

Sequence Viewer

Length: 1611 bp
ATGCAAGGGAGTAAAGAAAGGAATATCACAAAGGCAATCAGCCTTGGAAAAGCGTCAAGAAGAGAGAGAAAATTGGCTTTGCAACAAGATGTTGATAAGCTGAAGAAGAAGCTTAGACATGAAGAGAATGTACACAGAGCTTTGCAGAGGGCATTCAATAGACCCCTGGGAGCTCTACCTCGTCTACCACCTTATCTGCCTCCTTATACATTAGAGCTTCTTGCTGAGGTTGCTGTTTTGGAAGAGGAAGTTGTTCGGCTTGAAGAACAAGTAGTGCATTTTAGGAAGGACTTGTATCAGGAAGCTGTCAACATTTCGACTTCCAAGAGGAGCTTAGAAACCTCAGCTGAACTATGTGATTCAAACCCTAAAAAGAATCATAAATTTCATGGTAGTATAGTGGACACTGATACCGCGGTGAAGCATTCGCCATCCCCTTCTGATCATAAGCAAGAGAATCAATCATGTAATCCCTCAATGAAGAACAACAAGAAATCCTTGATCCATAGTAATGCTCAGGTTAGGACTCCAGCGAAAAGACCTCCAGTTGATCCGAAAATAGCACAAAAGCGTTTAGATTCTCCAAAACTACAGTTAGAAGTTAGAGTAACTGAACAAGAGAGCACAGAAGCAAGACTTTCTAGTATTCCAGAAAAAAAGCCATCCGGAGATGACAGCCCAAACAAAATATCTGAAAATATTCTGAAGTGCTTATCAAGCATTTTCATGAGAATGAGTTCAGCAAAGGGCATTACGGAAAACCAGCCTTCCTTTTCAACATTAGGAATCCAACAAAGCAATGAAAAACCAGAATTTTGGGATCCTTATGGTATCTGTTCAGAATTTGGACGGAGAGATATTGGTCCATATAAGCAATTACATGCAGTTGAAGCCCGCTCTATTAATCCTAATCGAACAGCAAGCTCTTTGTTCCTGCTCCGAAGATTGAAATTACTGCTAGGGAAACTTGCTTCTGTAAATTTGAAAAGCCTCGGTCATCAAGAGAAGCTTGCATTCTGGATTAATATCTACAATTCCTGCATGATGAATGCTTTCTTAGAACATGGAATACCAGAGAGGCCTGAAATAATTGTCGCGCTAATGCAGAAGGCAACTATAAATGTTGGGGGGCACTTGCTCAGTGCAATAACTATAGAACATTTTATCTTGAGGCTGCCATATCACTCAAAATATACCTTCTCCAAGGGTGCAAAGAATGATGAGAATACAGCAAGAAGCATTTTCGCATTGGAATTATCTGAACCGCTGGTAACATTTGCTCTATCATGTGGAAGCTGGTCCTCCCCTGCTGTAAGAGTTTACACTGCATCCCAAGTTGACAATGAACTAGAAATCGCAAAAAGAGAGTACTTGCAGGCTGCAGTTGGAATTTCATCGAGCAAGTTTGCAATTCCAAAGCTTTTGGATTGGTACCTACTTGATTACGCAAAGGATTTAGAGTCGTTGCTAGACTGGATCTGCCTTCAGCTACCTAGTGAACTAGGAAAAGAAGCAATCAAGTTTCTTGAAGGAGCCAAAACCGATCCTCATTCACAGTTTGTCCAAATCATGCCCTATGAGTTCAGCTTTAGGTATCTTCTACACACATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

537

Amino Acids

60.63

Weight (kDa)

9.13

Isoelectric Point (pI)

54.48

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Lzipper-MIP1 PF14389 47 - 128 3e-23 Leucine-zipper of ternary complex factor MIP1
DUF547 PF04784 356 - 485 8.5e-40 Protein of unknown function, DUF547
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 1431
AccB1I GGYRCC 1 cut(s) 1431
AccBSI CCGCTC 1 cut(s) 897
AccI GTMKAC 1 cut(s) 184
AccII CGCG 2 cut(s) 416, 1097
AccIII TCCGGA 1 cut(s) 665
AciI CCGC 4 cut(s) 414, 416, 895, 1265
AclWI GGATC 6 cut(s) 496, 545, 815, 828, 1484, 1538
AcsI RAATTY 5 cut(s) 383, 812, 842, 979, 1389
AcuI CTGAAG 3 cut(s) 122, 725, 1469
AfaI GTAC 3 cut(s) 132, 1370, 1433
AgsI TTSAA 8 cut(s) 157, 263, 363, 777, 890, 949, 985, 1529
AjnI CCWGG 1 cut(s) 165
Alw21I GWGCWC 2 cut(s) 175, 626
AlwI GGATC 6 cut(s) 496, 545, 815, 828, 1484, 1538
Aor13HI TCCGGA 1 cut(s) 665
AoxI GGCC 1 cut(s) 1079
ApeKI GCWGC 2 cut(s) 1174, 1379
ApoI RAATTY 5 cut(s) 383, 812, 842, 979, 1389
AseI ATTAAT 2 cut(s) 903, 1023
Asp700I GAANNNNTTC 4 cut(s) 252, 699, 736, 1052
Asp718I GGTACC 1 cut(s) 1431
AspLEI GCGC 1 cut(s) 1099
AspS9I GGNCC 2 cut(s) 863, 1299
AsuHPI GGTGA 1 cut(s) 430
AvaII GGWCC 2 cut(s) 863, 1299
BaeGI GKGCMC 1 cut(s) 1134
BaeI ACNNNNGTAYC 2 cut(s) 402, 435
BamHI GGATCC 1 cut(s) 820
BanI GGYRCC 1 cut(s) 1431
BanII GRGCYC 1 cut(s) 175
BarI GAAGNNNNNNTAC 2 cut(s) 114, 146
Bbv12I GWGCWC 2 cut(s) 175, 626
BbvCI CCTCAGC 2 cut(s) 225, 343
BbvI GCAGC 2 cut(s) 1161, 1366
BccI CCATC 2 cut(s) 439, 670
BciT130I CCWGG 1 cut(s) 167
BclI TGATCA 1 cut(s) 442
BfaI CTAG 6 cut(s) 642, 959, 1349, 1469, 1494, 1502
BfmI CTRYAG 3 cut(s) 590, 1152, 1380
BisI GCNGC 2 cut(s) 1175, 1380
BlsI GCNGC 2 cut(s) 1176, 1381
BmcAI AGTACT 1 cut(s) 1370
Bme1390I CCNGG 1 cut(s) 167
Bme18I GGWCC 2 cut(s) 863, 1299
BmgT120I GGNCC 2 cut(s) 863, 1299
BmiI GGNNCC 3 cut(s) 822, 1433, 1534
BmrFI CCNGG 1 cut(s) 167
BmsI GCATC 1 cut(s) 1337
BpmI CTGGAG 2 cut(s) 513, 528
Bpu10I CCTNAGC 3 cut(s) 225, 343, 516
BpuEI CTTGAG 1 cut(s) 1189
BsaBI GATNNNNATC 1 cut(s) 1025
BsaJI CCNNGG 6 cut(s) 43, 165, 166, 414, 991, 1203
BsaWI WCCGGW 1 cut(s) 665
Bse1I ACTGG 2 cut(s) 545, 1478
Bse3DI GCAATG 1 cut(s) 805
Bse8I GATNNNNATC 1 cut(s) 1025
BseAI TCCGGA 1 cut(s) 665
BseBI CCWGG 1 cut(s) 167
BseDI CCNNGG 6 cut(s) 43, 165, 166, 414, 991, 1203
BseGI GGATG 3 cut(s) 431, 662, 1328
BseJI GATNNNNATC 1 cut(s) 1025
BseMI GCAATG 1 cut(s) 805
BseMII CTCAG 4 cut(s) 216, 357, 530, 1153
BseNI ACTGG 2 cut(s) 545, 1478
BseRI GAGGAG 1 cut(s) 343
BseSI GKGCMC 1 cut(s) 1134
BseXI GCAGC 2 cut(s) 1161, 1366
Bsh1236I CGCG 2 cut(s) 416, 1097
BshFI GGCC 1 cut(s) 1081
BshNI GGYRCC 1 cut(s) 1431
BsiHKAI GWGCWC 2 cut(s) 175, 626
BsiSI CCGG 1 cut(s) 666
BsmI GAATGC 4 cut(s) 152, 424, 1013, 1054
BsnI GGCC 1 cut(s) 1081
Bsp1286I GDGCHC 3 cut(s) 175, 626, 1134
Bsp13I TCCGGA 1 cut(s) 665
Bsp1407I TGTACA 1 cut(s) 130
Bsp143I GATC 6 cut(s) 442, 501, 550, 820, 1476, 1543
BspACI CCGC 4 cut(s) 414, 416, 895, 1265
BspANI GGCC 1 cut(s) 1081
BspCNI CTCAG 4 cut(s) 217, 356, 529, 1152
BspEI TCCGGA 1 cut(s) 665
BspFNI CGCG 2 cut(s) 416, 1097
BspHI TCATGA 1 cut(s) 726
BspLI GGNNCC 3 cut(s) 822, 1433, 1534
BspMAI CTGCAG 1 cut(s) 1384
BspPI GGATC 6 cut(s) 496, 545, 815, 828, 1484, 1538
BspT107I GGYRCC 1 cut(s) 1431
BsrBI CCGCTC 1 cut(s) 897
BsrDI GCAATG 1 cut(s) 805
BsrGI TGTACA 1 cut(s) 130
BsrI ACTGG 2 cut(s) 545, 1478
BssECI CCNNGG 6 cut(s) 43, 165, 166, 414, 991, 1203
BssMI GATC 6 cut(s) 442, 501, 550, 820, 1476, 1543
BssT1I CCWWGG 2 cut(s) 43, 1203
Bst2UI CCWGG 1 cut(s) 167
Bst4CI ACNGT 2 cut(s) 594, 1557
Bst6I CTCTTC 3 cut(s) 55, 117, 237
BstAUI TGTACA 1 cut(s) 130
BstC8I GCNNGC 4 cut(s) 895, 922, 1011, 1377
BstDEI CTNAG 7 cut(s) 113, 225, 334, 343, 516, 1057, 1139
BstDSI CCRYGG 1 cut(s) 414
BstF5I GGATG 3 cut(s) 431, 662, 1328
BstFNI CGCG 2 cut(s) 416, 1097
BstHHI GCGC 1 cut(s) 1099
BstKTI GATC 6 cut(s) 445, 504, 553, 823, 1479, 1546
BstMBI GATC 6 cut(s) 442, 501, 550, 820, 1476, 1543
BstMWI GCNNNNNNNGC 3 cut(s) 230, 717, 890
BstNI CCWGG 1 cut(s) 167
BstNSI RCATGY 1 cut(s) 884
BstSCI CCNGG 1 cut(s) 165
BstSFI CTRYAG 3 cut(s) 590, 1152, 1380
BstSLI GKGCMC 1 cut(s) 1134
BstUI CGCG 2 cut(s) 416, 1097
BstV1I GCAGC 2 cut(s) 1161, 1366
BstX2I RGATCY 2 cut(s) 820, 1476
BstXI CCANNNNNNTGG 1 cut(s) 816
BstYI RGATCY 2 cut(s) 820, 1476
BsuRI GGCC 1 cut(s) 1081
BtgI CCRYGG 1 cut(s) 414
BtsCI GGATG 3 cut(s) 431, 662, 1328
BtsI GCAGTG 1 cut(s) 1323
BtsIMutI CAGTG 3 cut(s) 405, 1147, 1323
Cac8I GCNNGC 4 cut(s) 895, 922, 1011, 1377
CciI TCATGA 1 cut(s) 726
CfoI GCGC 1 cut(s) 1099
Cfr13I GGNCC 2 cut(s) 863, 1299
Cfr42I CCGCGG 1 cut(s) 417
CseI GACGC 1 cut(s) 42
Csp6I GTAC 3 cut(s) 131, 1369, 1432
CviQI GTAC 3 cut(s) 131, 1369, 1432
DdeI CTNAG 7 cut(s) 113, 225, 334, 343, 516, 1057, 1139
DpnI GATC 6 cut(s) 444, 503, 552, 822, 1478, 1545
DpnII GATC 6 cut(s) 442, 501, 550, 820, 1476, 1543
Eam1104I CTCTTC 3 cut(s) 55, 117, 237
EarI CTCTTC 3 cut(s) 55, 117, 237
Ecl136II GAGCTC 1 cut(s) 173
Eco130I CCWWGG 2 cut(s) 43, 1203
Eco147I AGGCCT 1 cut(s) 1081
Eco24I GRGCYC 1 cut(s) 175
Eco47I GGWCC 2 cut(s) 863, 1299
Eco53kI GAGCTC 1 cut(s) 173
Eco57I CTGAAG 3 cut(s) 122, 725, 1469
EcoICRI GAGCTC 1 cut(s) 173
EcoRII CCWGG 1 cut(s) 165
EcoT14I CCWWGG 2 cut(s) 43, 1203
EcoT38I GRGCYC 1 cut(s) 175
ErhI CCWWGG 2 cut(s) 43, 1203
FalI AAGNNNNNCTT 8 cut(s) 317, 349, 482, 514, 621, 653, 993, 1025
FauI CCCGC 1 cut(s) 902
FbaI TGATCA 1 cut(s) 442
FblI GTMKAC 1 cut(s) 184
Fnu4HI GCNGC 2 cut(s) 1175, 1380
FokI GGATG 3 cut(s) 418, 649, 1315
FriOI GRGCYC 1 cut(s) 175
Fsp4HI GCNGC 2 cut(s) 1175, 1380
FspBI CTAG 6 cut(s) 642, 959, 1349, 1469, 1494, 1502
GlaI GCGC 1 cut(s) 1098
GluI GCNGC 2 cut(s) 1175, 1380
GsuI CTGGAG 2 cut(s) 513, 528
HaeIII GGCC 1 cut(s) 1081
HapII CCGG 1 cut(s) 666
HgaI GACGC 1 cut(s) 42
HhaI GCGC 1 cut(s) 1099
Hin6I GCGC 1 cut(s) 1097
HinP1I GCGC 1 cut(s) 1097
HincII GTYRAC 2 cut(s) 310, 1339
HindII GTYRAC 2 cut(s) 310, 1339
HindIII AAGCTT 3 cut(s) 110, 1007, 1418
HinfI GANTC 7 cut(s) 359, 376, 457, 526, 578, 786, 1460
HpaII CCGG 1 cut(s) 666
HphI GGTGA 1 cut(s) 430
Hpy166II GTNNAC 7 cut(s) 133, 185, 310, 403, 1321, 1339, 1499
Hpy188I TCNGA 7 cut(s) 442, 555, 694, 705, 841, 941, 1261
Hpy188III TCNNGA 9 cut(s) 57, 299, 650, 666, 727, 1001, 1018, 1168, 1526
Hpy8I GTNNAC 7 cut(s) 133, 185, 310, 403, 1321, 1339, 1499
HpyAV CCTTC 7 cut(s) 280, 447, 777, 1102, 1207, 1493, 1523
HpyCH4III ACNGT 2 cut(s) 594, 1557
HpyF10VI GCNNNNNNNGC 3 cut(s) 230, 717, 890
HpyF3I CTNAG 7 cut(s) 113, 225, 334, 343, 516, 1057, 1139
HspAI GCGC 1 cut(s) 1097
Kpn2I TCCGGA 1 cut(s) 665
KpnI GGTACC 1 cut(s) 1435
Ksp22I TGATCA 1 cut(s) 442
KspI CCGCGG 1 cut(s) 417
Kzo9I GATC 6 cut(s) 442, 501, 550, 820, 1476, 1543
LmnI GCTCC 4 cut(s) 170, 330, 942, 1532
Lsp1109I GCAGC 2 cut(s) 1161, 1366
LweI GCATC 1 cut(s) 1337
MaeI CTAG 6 cut(s) 642, 959, 1349, 1469, 1494, 1502
MaeIII GTNAC 2 cut(s) 607, 1270
MalI GATC 6 cut(s) 444, 503, 552, 822, 1478, 1545
MbiI CCGCTC 1 cut(s) 897
MboI GATC 6 cut(s) 442, 501, 550, 820, 1476, 1543
MboII GAAGA 9 cut(s) 72, 115, 118, 134, 254, 275, 493, 954, 1589
MflI RGATCY 2 cut(s) 820, 1476
MhlI GDGCHC 3 cut(s) 175, 626, 1134
MlyI GAGTC 2 cut(s) 520, 1469
MmeI TCCRAC 2 cut(s) 814, 1366
MroI TCCGGA 1 cut(s) 665
MroXI GAANNNNTTC 4 cut(s) 252, 699, 736, 1052
MseI TTAA 2 cut(s) 903, 1023
MslI CAYNNNNRTG 3 cut(s) 510, 725, 731
MspA1I CMGCKG 3 cut(s) 347, 416, 1267
MspI CCGG 1 cut(s) 666
MspR9I CCNGG 1 cut(s) 167
Mva1269I GAATGC 4 cut(s) 152, 424, 1013, 1054
MvaI CCWGG 1 cut(s) 167
MvnI CGCG 2 cut(s) 416, 1097
MwoI GCNNNNNNNGC 3 cut(s) 230, 717, 890
NdeII GATC 6 cut(s) 442, 501, 550, 820, 1476, 1543
NlaIV GGNNCC 3 cut(s) 822, 1433, 1534
NspI RCATGY 1 cut(s) 884
PagI TCATGA 1 cut(s) 726
PasI CCCWGGG 1 cut(s) 166
PceI AGGCCT 1 cut(s) 1081
PctI GAATGC 4 cut(s) 152, 424, 1013, 1054
PdmI GAANNNNTTC 4 cut(s) 252, 699, 736, 1052
PfeI GAWTC 5 cut(s) 359, 376, 457, 578, 786
PkrI GCNGC 2 cut(s) 1176, 1381
PleI GAGTC 2 cut(s) 520, 1468
PpsI GAGTC 2 cut(s) 520, 1468
PshBI ATTAAT 2 cut(s) 903, 1023
Psp124BI GAGCTC 1 cut(s) 175
Psp6I CCWGG 1 cut(s) 165
PspGI CCWGG 1 cut(s) 165
PspN4I GGNNCC 3 cut(s) 822, 1433, 1534
PspPI GGNCC 2 cut(s) 863, 1299
PsrI GAACNNNNNNTAC 2 cut(s) 1053, 1085
PstI CTGCAG 1 cut(s) 1384
PsuI RGATCY 2 cut(s) 820, 1476
PvuII CAGCTG 1 cut(s) 347
RsaI GTAC 3 cut(s) 132, 1370, 1433
RsaNI GTAC 3 cut(s) 131, 1369, 1432
RseI CAYNNNNRTG 3 cut(s) 510, 725, 731
SacI GAGCTC 1 cut(s) 175
SacII CCGCGG 1 cut(s) 417
SaqAI TTAA 2 cut(s) 903, 1023
SatI GCNGC 2 cut(s) 1175, 1380
Sau3AI GATC 6 cut(s) 442, 501, 550, 820, 1476, 1543
Sau96I GGNCC 2 cut(s) 863, 1299
ScaI AGTACT 1 cut(s) 1370
SchI GAGTC 2 cut(s) 520, 1469
ScrFI CCNGG 1 cut(s) 167
SduI GDGCHC 3 cut(s) 175, 626, 1134
SfaNI GCATC 1 cut(s) 1337
SfcI CTRYAG 3 cut(s) 590, 1152, 1380
Sfr303I CCGCGG 1 cut(s) 417
SgrBI CCGCGG 1 cut(s) 417
SinI GGWCC 2 cut(s) 863, 1299
SmiMI CAYNNNNRTG 3 cut(s) 510, 725, 731
SmlI CTYRAG 1 cut(s) 1168
SmoI CTYRAG 1 cut(s) 1168
SseBI AGGCCT 1 cut(s) 1081
SsiI CCGC 4 cut(s) 414, 416, 895, 1265
SspI AATATT 1 cut(s) 700
SspMI CTAG 6 cut(s) 642, 959, 1349, 1469, 1494, 1502
SstI GAGCTC 1 cut(s) 175
StuI AGGCCT 1 cut(s) 1081
StyD4I CCNGG 1 cut(s) 165
StyI CCWWGG 2 cut(s) 43, 1203
TaaI ACNGT 2 cut(s) 594, 1557
TaqI TCGA 3 cut(s) 317, 913, 1397
TaqII GACCGA 1 cut(s) 983
TatI WGTACW 2 cut(s) 130, 1368
TfiI GAWTC 5 cut(s) 359, 376, 457, 578, 786
Tru1I TTAA 2 cut(s) 903, 1023
Tru9I TTAA 2 cut(s) 903, 1023
TscAI CASTG 3 cut(s) 412, 1147, 1330
TseI GCWGC 2 cut(s) 1174, 1379
TspDTI ATGAA 8 cut(s) 135, 377, 494, 715, 816, 1061, 1359, 1383
TspGWI ACGGA 2 cut(s) 770, 865
TspRI CASTG 3 cut(s) 412, 1147, 1330
VpaK11BI GGWCC 2 cut(s) 863, 1299
VspI ATTAAT 2 cut(s) 903, 1023
XapI RAATTY 5 cut(s) 383, 812, 842, 979, 1389
XceI RCATGY 1 cut(s) 884
XmiI GTMKAC 1 cut(s) 184
XmnI GAANNNNTTC 4 cut(s) 252, 699, 736, 1052
XspI CTAG 6 cut(s) 642, 959, 1349, 1469, 1494, 1502
ZrmI AGTACT 1 cut(s) 1370
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.