Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0004134

Physical Location & Seq

Genomic Coordinates Forward (+)

17543991 .. 17545847

Gene Structure 1857 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G43680.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 699 bp

ATGCTTGGGCTTTCTTACGGTGAGCTCTTACTCATCGTCGGCGCCACAGCTGCTCTTGTAGGACCCAAGGATCTTCCGATTATTGCTAGAGCAGGAGGAAGATTATTCGGACGAGCCATTGGTTACATCAATATGGCTCGTGGTCACTTGGATGGTGTCATGAAACAACCTCAGATGCAAGAGATATCGAAAGAAGTTCAAGATTTACGAGCACAAGTAGATGCGATTAGCCATGGAGCAAGATTTTCTCTATTTGATTCTAGTCCTTTGACTCGAAGAGTGGATAACCAAAAAACTCAAGAACCTAGTCCAAGCACCACCAATGGGATTGTTACATCCGTTAATGTTGAAGAAAAACAGAAGCCTGTAGATCATTATACAAAGGCTCAAGAATTTAGTGGCTCGTCGTCAGCTTCTGTTAACCTGCACGCTCAAGCAACATCATTTGCACGATTATCTGAGACAGTCAATGGAAAAACTCACAGTCTAAACAGTGATTCACCTGTTCTTCCAGTATCAGCTGAGATGGCAAAGTTGCTTCCTCAACGCAAAGAGAGTGCAAGAGGATCTGATTTAATGTTAGAGGCGGTTCTTGAAGCGGAAGTAGCACACAAGGCGAAAAGCTTTTTCGCACAAGCCGAGAAAGAAACTCCAGCTTTGAAAGGGAAGTTTTTCAGTGACAGGAAAGGAGAAAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

232

Amino Acids

25.03

Weight (kDa)

8.75

Isoelectric Point (pI)

33.92

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004134)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G43680 AT5G43680
fragaria_vesca	FvH4_4g02310
malus_domestica	MD04G1026200.v1.1
prunus_persica	Prupe.1G027700_v2.0.a1 Prupe.1G027700_v2.0.a1 Prupe.1G027700_v2.0.a1 Prupe.1G027700_v2.0.a1 Prupe.1G175900_v2.0.a1 Prupe.1G175900_v2.0.a1 Prupe.1G175900_v2.0.a1 Prupe.1G175900_v2.0.a1 Prupe.1G175900_v2.0.a1 Prupe.2G050700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0389631
rosa_laevigata	RLG00000009965 RLG00000019817
rosa_multiflora	Rmu_sc0007419.1_g000005 Rmu_sc0034173.1_g000001
rosa_roxburghii	Rroxscaffold_5G00335620
rosa_rugosa	Rorug02G0358300 Rorug03G0324300 Rorug03G0324400 Rorug03G0324500 Rorug03G0324600
rosa_samantha	Rh2AG407700 Rh2CG393700 Rh2DG427400 Rh4AG029100 Rh4BG022300 Rh4CG031100 Rh4DG022800
rosa_wichuraiana	Rw4G002170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	432
AccB1I	GGYRCC	1 cut(s)	41
AciI	CCGC	2 cut(s)	587, 599
AclWI	GGATC	2 cut(s)	78, 574
AcsI	RAATTY	1 cut(s)	392
AcyI	GRCGYC	1 cut(s)	42
AfiI	CCNNNNNNNGG	1 cut(s)	324
AgsI	TTSAA	4 cut(s)	200, 350, 596, 661
AluBI	AGCT	6 cut(s)	25, 50, 413, 521, 624, 656
AluI	AGCT	6 cut(s)	25, 50, 413, 521, 624, 656
Alw21I	GWGCWC	2 cut(s)	27, 214
Alw26I	GTCTC	1 cut(s)	455
AlwI	GGATC	2 cut(s)	78, 574
AlwNI	CAGNNNCTG	1 cut(s)	416
ApeKI	GCWGC	1 cut(s)	50
ApoI	RAATTY	1 cut(s)	392
Asp700I	GAANNNNTTC	1 cut(s)	671
AspLEI	GCGC	1 cut(s)	44
AspS9I	GGNCC	1 cut(s)	62
AsuHPI	GGTGA	2 cut(s)	32, 492
AvaII	GGWCC	1 cut(s)	62
BanI	GGYRCC	1 cut(s)	41
BanII	GRGCYC	1 cut(s)	27
BauI	CACGAG	1 cut(s)	138
Bbv12I	GWGCWC	2 cut(s)	27, 214
BbvI	GCAGC	1 cut(s)	37
BccI	CCATC	2 cut(s)	146, 520
BcoDI	GTCTC	1 cut(s)	455
BfaI	CTAG	3 cut(s)	87, 261, 306
BfmI	CTRYAG	1 cut(s)	366
BfoI	RGCGCY	1 cut(s)	45
BfuAI	ACCTGC	1 cut(s)	432
BisI	GCNGC	1 cut(s)	51
BlsI	GCNGC	1 cut(s)	52
Bme18I	GGWCC	1 cut(s)	62
BmgT120I	GGNCC	1 cut(s)	62
BmiI	GGNNCC	2 cut(s)	43, 64
BmsI	GCATC	2 cut(s)	165, 211
BpmI	CTGGAG	1 cut(s)	636
BpuEI	CTTGAG	3 cut(s)	282, 372, 417
BsaHI	GRCGYC	1 cut(s)	42
BsaJI	CCNNGG	2 cut(s)	66, 232
Bsc4I	CCNNNNNNNGG	1 cut(s)	324
Bse1I	ACTGG	1 cut(s)	512
BseDI	CCNNGG	2 cut(s)	66, 232
BseGI	GGATG	2 cut(s)	157, 335
BseLI	CCNNNNNNNGG	1 cut(s)	324
BseMII	CTCAG	3 cut(s)	185, 450, 513
BseNI	ACTGG	1 cut(s)	512
BseXI	GCAGC	1 cut(s)	37
BsgI	GTGCAG	1 cut(s)	410
BshNI	GGYRCC	1 cut(s)	41
BsiHKAI	GWGCWC	2 cut(s)	27, 214
BslI	CCNNNNNNNGG	1 cut(s)	324
BsmAI	GTCTC	1 cut(s)	455
Bsp1286I	GDGCHC	2 cut(s)	27, 214
Bsp143I	GATC	3 cut(s)	70, 370, 566
Bsp19I	CCATGG	1 cut(s)	232
BspACI	CCGC	2 cut(s)	587, 599
BspCNI	CTCAG	3 cut(s)	184, 451, 514
BspHI	TCATGA	1 cut(s)	159
BspLI	GGNNCC	2 cut(s)	43, 64
BspMI	ACCTGC	1 cut(s)	432
BspPI	GGATC	2 cut(s)	78, 574
BspT107I	GGYRCC	1 cut(s)	41
BsrI	ACTGG	1 cut(s)	512
BssECI	CCNNGG	2 cut(s)	66, 232
BssMI	GATC	3 cut(s)	70, 370, 566
BssNI	GRCGYC	1 cut(s)	42
BssSI	CACGAG	1 cut(s)	138
BssT1I	CCWWGG	2 cut(s)	66, 232
Bst2BI	CACGAG	1 cut(s)	138
Bst4CI	ACNGT	4 cut(s)	20, 466, 485, 494
Bst6I	CTCTTC	1 cut(s)	271
BstACI	GRCGYC	1 cut(s)	42
BstC8I	GCNNGC	1 cut(s)	429
BstDEI	CTNAG	3 cut(s)	171, 459, 522
BstDSI	CCRYGG	1 cut(s)	232
BstF5I	GGATG	2 cut(s)	157, 335
BstH2I	RGCGCY	1 cut(s)	45
BstHHI	GCGC	1 cut(s)	44
BstKTI	GATC	3 cut(s)	73, 373, 569
BstMAI	GTCTC	1 cut(s)	455
BstMBI	GATC	3 cut(s)	70, 370, 566
BstMWI	GCNNNNNNNGC	4 cut(s)	50, 527, 605, 614
BstSFI	CTRYAG	1 cut(s)	366
BstV1I	GCAGC	1 cut(s)	37
BstX2I	RGATCY	2 cut(s)	70, 566
BstYI	RGATCY	2 cut(s)	70, 566
BtgI	CCRYGG	1 cut(s)	232
BtsCI	GGATG	2 cut(s)	157, 335
BtsIMutI	CAGTG	2 cut(s)	499, 682
BveI	ACCTGC	1 cut(s)	432
Cac8I	GCNNGC	1 cut(s)	429
CaiI	CAGNNNCTG	1 cut(s)	416
CciI	TCATGA	1 cut(s)	159
CfoI	GCGC	1 cut(s)	44
Cfr13I	GGNCC	1 cut(s)	62
CviAII	CATG	2 cut(s)	160, 233
DdeI	CTNAG	3 cut(s)	171, 459, 522
DinI	GGCGCC	1 cut(s)	43
DpnI	GATC	3 cut(s)	72, 372, 568
DpnII	GATC	3 cut(s)	70, 370, 566
Eam1104I	CTCTTC	1 cut(s)	271
EarI	CTCTTC	1 cut(s)	271
Ecl136II	GAGCTC	1 cut(s)	25
Eco130I	CCWWGG	2 cut(s)	66, 232
Eco24I	GRGCYC	1 cut(s)	27
Eco32I	GATATC	1 cut(s)	186
Eco47I	GGWCC	1 cut(s)	62
Eco53kI	GAGCTC	1 cut(s)	25
EcoICRI	GAGCTC	1 cut(s)	25
EcoO109I	RGGNCCY	1 cut(s)	62
EcoRV	GATATC	1 cut(s)	186
EcoT14I	CCWWGG	2 cut(s)	66, 232
EcoT38I	GRGCYC	1 cut(s)	27
EgeI	GGCGCC	1 cut(s)	43
EheI	GGCGCC	1 cut(s)	43
ErhI	CCWWGG	2 cut(s)	66, 232
FaeI	CATG	2 cut(s)	163, 236
FaiI	YATR	4 cut(s)	134, 161, 234, 378
FatI	CATG	2 cut(s)	159, 232
Fnu4HI	GCNGC	1 cut(s)	51
FokI	GGATG	2 cut(s)	164, 322
FriOI	GRGCYC	1 cut(s)	27
Fsp4HI	GCNGC	1 cut(s)	51
FspBI	CTAG	3 cut(s)	87, 261, 306
GlaI	GCGC	1 cut(s)	43
GluI	GCNGC	1 cut(s)	51
GsuI	CTGGAG	1 cut(s)	636
HaeII	RGCGCY	1 cut(s)	45
HhaI	GCGC	1 cut(s)	44
Hin1I	GRCGYC	1 cut(s)	42
Hin1II	CATG	2 cut(s)	163, 236
Hin6I	GCGC	1 cut(s)	42
HinP1I	GCGC	1 cut(s)	42
HincII	GTYRAC	1 cut(s)	421
HindII	GTYRAC	1 cut(s)	421
HindIII	AAGCTT	1 cut(s)	622
HinfI	GANTC	3 cut(s)	257, 271, 497
HpaI	GTTAAC	1 cut(s)	421
HphI	GGTGA	2 cut(s)	32, 492
Hpy166II	GTNNAC	1 cut(s)	421
Hpy188I	TCNGA	5 cut(s)	78, 110, 174, 460, 571
Hpy188III	TCNNGA	5 cut(s)	160, 200, 299, 389, 593
Hpy8I	GTNNAC	1 cut(s)	421
Hpy99I	CGWCG	2 cut(s)	41, 409
HpyCH4III	ACNGT	4 cut(s)	20, 466, 485, 494
HpyCH4V	TGCA	4 cut(s)	178, 427, 449, 560
HpyF10VI	GCNNNNNNNGC	4 cut(s)	50, 527, 605, 614
HpyF3I	CTNAG	3 cut(s)	171, 459, 522
Hsp92I	GRCGYC	1 cut(s)	42
Hsp92II	CATG	2 cut(s)	163, 236
HspAI	GCGC	1 cut(s)	42
KasI	GGCGCC	1 cut(s)	41
KspAI	GTTAAC	1 cut(s)	421
Kzo9I	GATC	3 cut(s)	70, 370, 566
LmnI	GCTCC	1 cut(s)	236
LpnPI	CCDG	7 cut(s)	78, 378, 437, 516, 525, 666, 667
Lsp1109I	GCAGC	1 cut(s)	37
LweI	GCATC	2 cut(s)	165, 211
MaeI	CTAG	3 cut(s)	87, 261, 306
MaeIII	GTNAC	4 cut(s)	122, 143, 331, 677
MalI	GATC	3 cut(s)	72, 372, 568
MboI	GATC	3 cut(s)	70, 370, 566
MboII	GAAGA	5 cut(s)	65, 111, 288, 362, 500
MflI	RGATCY	2 cut(s)	70, 566
MhlI	GDGCHC	2 cut(s)	27, 214
MluCI	AATT	2 cut(s)	392, 694
Mly113I	GGCGCC	1 cut(s)	42
MlyI	GAGTC	1 cut(s)	265
MnlI	CCTC	5 cut(s)	89, 180, 552, 557, 577
MroXI	GAANNNNTTC	1 cut(s)	671
MseI	TTAA	3 cut(s)	342, 420, 575
MslI	CAYNNNNRTG	2 cut(s)	131, 150
MspA1I	CMGCKG	2 cut(s)	50, 521
MwoI	GCNNNNNNNGC	4 cut(s)	50, 527, 605, 614
NarI	GGCGCC	1 cut(s)	42
NcoI	CCATGG	1 cut(s)	232
NdeII	GATC	3 cut(s)	70, 370, 566
NlaIII	CATG	2 cut(s)	163, 236
NlaIV	GGNNCC	2 cut(s)	43, 64
NmeAIII	GCCGAG	1 cut(s)	664
NmuCI	GTSAC	2 cut(s)	143, 677
PagI	TCATGA	1 cut(s)	159
PcsI	WCGNNNNNNNCGW	1 cut(s)	636
PdmI	GAANNNNTTC	1 cut(s)	671
PfeI	GAWTC	2 cut(s)	257, 497
PkrI	GCNGC	1 cut(s)	52
PleI	GAGTC	1 cut(s)	265
PluTI	GGCGCC	1 cut(s)	45
PpsI	GAGTC	1 cut(s)	265
PpuMI	RGGWCCY	1 cut(s)	62
Psp124BI	GAGCTC	1 cut(s)	27
Psp5II	RGGWCCY	1 cut(s)	62
PspN4I	GGNNCC	2 cut(s)	43, 64
PspPI	GGNCC	1 cut(s)	62
PspPPI	RGGWCCY	1 cut(s)	62
PstNI	CAGNNNCTG	1 cut(s)	416
PsuI	RGATCY	2 cut(s)	70, 566
PvuII	CAGCTG	2 cut(s)	50, 521
RseI	CAYNNNNRTG	2 cut(s)	131, 150
SacI	GAGCTC	1 cut(s)	27
SaqAI	TTAA	3 cut(s)	342, 420, 575
SatI	GCNGC	1 cut(s)	51
Sau3AI	GATC	3 cut(s)	70, 370, 566
Sau96I	GGNCC	1 cut(s)	62
SchI	GAGTC	1 cut(s)	265
SduI	GDGCHC	2 cut(s)	27, 214
SfaNI	GCATC	2 cut(s)	165, 211
SfcI	CTRYAG	1 cut(s)	366
SfoI	GGCGCC	1 cut(s)	43
SinI	GGWCC	1 cut(s)	62
SmiMI	CAYNNNNRTG	2 cut(s)	131, 150
SmlI	CTYRAG	3 cut(s)	297, 387, 432
SmoI	CTYRAG	3 cut(s)	297, 387, 432
Sse9I	AATT	2 cut(s)	392, 694
SsiI	CCGC	2 cut(s)	587, 599
SspDI	GGCGCC	1 cut(s)	41
SspMI	CTAG	3 cut(s)	87, 261, 306
SstI	GAGCTC	1 cut(s)	27
StyI	CCWWGG	2 cut(s)	66, 232
TaaI	ACNGT	4 cut(s)	20, 466, 485, 494
TaqI	TCGA	2 cut(s)	188, 274
TasI	AATT	2 cut(s)	392, 694
TfiI	GAWTC	2 cut(s)	257, 497
Tru1I	TTAA	3 cut(s)	342, 420, 575
Tru9I	TTAA	3 cut(s)	342, 420, 575
TscAI	CASTG	2 cut(s)	499, 682
TseFI	GTSAC	2 cut(s)	143, 677
TseI	GCWGC	1 cut(s)	50
Tsp45I	GTSAC	2 cut(s)	143, 677
TspDTI	ATGAA	1 cut(s)	176
TspGWI	ACGGA	1 cut(s)	328
TspRI	CASTG	2 cut(s)	499, 682
VpaK11BI	GGWCC	1 cut(s)	62
XapI	RAATTY	1 cut(s)	392
XmnI	GAANNNNTTC	1 cut(s)	671
XspI	CTAG	3 cut(s)	87, 261, 306

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.