Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0004134

Physical Location & Seq

Genomic Coordinates Reverse (-)

2135771 .. 2137385

Gene Structure 1615 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g02310.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 681 bp

ATGTTCGGTATTTCATACGGCGAGCTCTTCCTCCTGATCGGCGCCACCGCCGCTCTAGTCGGACCTAAGGACTTGCCAAGGATTGCGAGAATGGCGGGGCGGTTAACGGGTCGGTCAATCGGGTATGTCCAGCTGGCCCGGGGCCAATTCGACAATGTGATGCAGCAATCTCAAGCTCGCCAGGTTCAAAAGGAGCTTCAAGAAGCGCTTTCGCAGTTGGATTCGATTCGGTATGAAGTAAGGAGCCTGTCGCTTATGAATCCCGGTCCTATGACTCGAAAGCTGATGGATAATGCTGAGGAAGTTGCCACTCCACGTAATGGGGCTAGTAGTTCAGTTGAGAATCCTAAGGAGGAAGTGAAGTCGACGGCTAGTGTGATAAAGGAGAATATTAACTTCAGAACCTCGGAATCACTTAATATGCATACACAAGCCTCTGCGTATGCTAAATTGGCGGAATCTGCTGCTGTGAAAGCTGGAAGCAGTGAAGAGAAAGAGAGCCTTATTGATGAAAATGGTCTTTTCCCTGTTCTCCCAATTTCAGCTGAACGCGCTGGAATGCTACCAAAACGCAAGGAAAACATTGAAGGATCAGACATTGTGTTGGAAGCGGTAGTTGAAGCAGAGGTAGCTCGTAACGCCAAAAATTTCTTTTCACAGCCTGAAAATCAAATACAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

227

Amino Acids

24.7

Weight (kDa)

5.46

Isoelectric Point (pI)

41.46

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004134)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G43680 AT5G43680
fragaria_vesca	FvH4_4g02310
malus_domestica	MD04G1026200.v1.1
prunus_persica	Prupe.1G027700_v2.0.a1 Prupe.1G027700_v2.0.a1 Prupe.1G027700_v2.0.a1 Prupe.1G027700_v2.0.a1 Prupe.1G175900_v2.0.a1 Prupe.1G175900_v2.0.a1 Prupe.1G175900_v2.0.a1 Prupe.1G175900_v2.0.a1 Prupe.1G175900_v2.0.a1 Prupe.2G050700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0389631
rosa_laevigata	RLG00000009965 RLG00000019817
rosa_multiflora	Rmu_sc0007419.1_g000005 Rmu_sc0034173.1_g000001
rosa_roxburghii	Rroxscaffold_5G00335620
rosa_rugosa	Rorug02G0358300 Rorug03G0324300 Rorug03G0324400 Rorug03G0324500 Rorug03G0324600
rosa_samantha	Rh2AG407700 Rh2CG393700 Rh2DG427400 Rh4AG029100 Rh4BG022300 Rh4CG031100 Rh4DG022800
rosa_wichuraiana	Rw4G002170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	41
AccB7I	CCANNNNNTGG	1 cut(s)	320
AccBSI	CCGCTC	1 cut(s)	53
AccI	GTMKAC	1 cut(s)	365
AccII	CGCG	1 cut(s)	552
AciI	CCGC	6 cut(s)	48, 51, 95, 100, 455, 611
AclWI	GGATC	1 cut(s)	598
AcsI	RAATTY	1 cut(s)	646
AcuI	CTGAAG	1 cut(s)	382
AcyI	GRCGYC	1 cut(s)	42
AfeI	AGCGCT	1 cut(s)	207
AfiI	CCNNNNNNNGG	1 cut(s)	320
AgsI	TTSAA	4 cut(s)	188, 200, 587, 620
AjnI	CCWGG	1 cut(s)	180
AluBI	AGCT	8 cut(s)	25, 133, 176, 196, 283, 476, 545, 632
AluI	AGCT	8 cut(s)	25, 133, 176, 196, 283, 476, 545, 632
Alw21I	GWGCWC	1 cut(s)	27
AlwI	GGATC	1 cut(s)	598
Ama87I	CYCGRG	1 cut(s)	138
Aor51HI	AGCGCT	1 cut(s)	207
AoxI	GGCC	2 cut(s)	135, 142
ApeKI	GCWGC	2 cut(s)	163, 464
ApoI	RAATTY	1 cut(s)	646
AspLEI	GCGC	3 cut(s)	44, 208, 554
AspS9I	GGNCC	4 cut(s)	62, 136, 142, 266
AsuC2I	CCSGG	3 cut(s)	139, 140, 264
AvaI	CYCGRG	1 cut(s)	138
AvaII	GGWCC	2 cut(s)	62, 266
AxyI	CCTNAGG	2 cut(s)	66, 348
BanI	GGYRCC	1 cut(s)	41
BanII	GRGCYC	1 cut(s)	27
Bbv12I	GWGCWC	1 cut(s)	27
BbvCI	CCTCAGC	1 cut(s)	297
BbvI	GCAGC	2 cut(s)	175, 451
BccI	CCATC	1 cut(s)	280
BceAI	ACGGC	2 cut(s)	34, 384
BciT130I	CCWGG	1 cut(s)	182
BcnI	CCSGG	3 cut(s)	139, 140, 264
BfaI	CTAG	3 cut(s)	56, 327, 372
BfoI	RGCGCY	2 cut(s)	45, 209
BisI	GCNGC	3 cut(s)	51, 164, 465
BlsI	GCNGC	3 cut(s)	52, 165, 466
Bme1390I	CCNGG	4 cut(s)	139, 140, 182, 264
Bme18I	GGWCC	2 cut(s)	62, 266
BmeT110I	CYCGRG	1 cut(s)	138
BmgT120I	GGNCC	4 cut(s)	62, 136, 142, 266
BmiI	GGNNCC	3 cut(s)	43, 143, 245
BmrFI	CCNGG	4 cut(s)	139, 140, 182, 264
BmsI	GCATC	1 cut(s)	150
Bpu10I	CCTNAGC	1 cut(s)	297
BpuEI	CTTGAG	1 cut(s)	156
BpuMI	CCSGG	3 cut(s)	139, 140, 264
BsaAI	YACGTR	1 cut(s)	317
BsaHI	GRCGYC	1 cut(s)	42
BsaJI	CCNNGG	4 cut(s)	77, 138, 139, 405
Bsc4I	CCNNNNNNNGG	1 cut(s)	320
Bse21I	CCTNAGG	2 cut(s)	66, 348
BseBI	CCWGG	1 cut(s)	182
BseDI	CCNNGG	4 cut(s)	77, 138, 139, 405
BseLI	CCNNNNNNNGG	1 cut(s)	320
BseMII	CTCAG	1 cut(s)	288
BseXI	GCAGC	2 cut(s)	175, 451
Bsh1236I	CGCG	1 cut(s)	552
BshFI	GGCC	2 cut(s)	137, 144
BshNI	GGYRCC	1 cut(s)	41
BsiHKAI	GWGCWC	1 cut(s)	27
BsiHKCI	CYCGRG	1 cut(s)	138
BsiSI	CCGG	2 cut(s)	139, 264
BslI	CCNNNNNNNGG	1 cut(s)	320
BsmI	GAATGC	1 cut(s)	564
BsnI	GGCC	2 cut(s)	137, 144
BsoBI	CYCGRG	1 cut(s)	138
Bsp1286I	GDGCHC	1 cut(s)	27
Bsp143I	GATC	2 cut(s)	36, 590
BspACI	CCGC	6 cut(s)	48, 51, 95, 100, 455, 611
BspANI	GGCC	2 cut(s)	137, 144
BspCNI	CTCAG	1 cut(s)	289
BspFNI	CGCG	1 cut(s)	552
BspLI	GGNNCC	3 cut(s)	43, 143, 245
BspPI	GGATC	1 cut(s)	598
BspQI	GCTCTTC	1 cut(s)	32
BspT107I	GGYRCC	1 cut(s)	41
BsrBI	CCGCTC	1 cut(s)	53
BssECI	CCNNGG	4 cut(s)	77, 138, 139, 405
BssMI	GATC	2 cut(s)	36, 590
BssNI	GRCGYC	1 cut(s)	42
BssT1I	CCWWGG	1 cut(s)	77
Bst2UI	CCWGG	1 cut(s)	182
Bst6I	CTCTTC	2 cut(s)	32, 483
BstACI	GRCGYC	1 cut(s)	42
BstBAI	YACGTR	1 cut(s)	317
BstC8I	GCNNGC	3 cut(s)	23, 135, 178
BstDEI	CTNAG	3 cut(s)	66, 297, 348
BstFNI	CGCG	1 cut(s)	552
BstH2I	RGCGCY	2 cut(s)	45, 209
BstHHI	GCGC	3 cut(s)	44, 208, 554
BstKTI	GATC	2 cut(s)	39, 593
BstMBI	GATC	2 cut(s)	36, 590
BstMWI	GCNNNNNNNGC	8 cut(s)	50, 92, 452, 461, 473, 551, 629, 638
BstNI	CCWGG	1 cut(s)	182
BstSCI	CCNGG	4 cut(s)	137, 138, 180, 262
BstUI	CGCG	1 cut(s)	552
BstV1I	GCAGC	2 cut(s)	175, 451
Bsu36I	CCTNAGG	2 cut(s)	66, 348
BsuRI	GGCC	2 cut(s)	137, 144
BtsI	GCAGTG	1 cut(s)	490
BtsIMutI	CAGTG	1 cut(s)	490
Cac8I	GCNNGC	3 cut(s)	23, 135, 178
CfoI	GCGC	3 cut(s)	44, 208, 554
Cfr13I	GGNCC	4 cut(s)	62, 136, 142, 266
Cfr9I	CCCGGG	1 cut(s)	138
DdeI	CTNAG	3 cut(s)	66, 297, 348
DinI	GGCGCC	1 cut(s)	43
DpnI	GATC	2 cut(s)	38, 592
DpnII	GATC	2 cut(s)	36, 590
Eam1104I	CTCTTC	2 cut(s)	32, 483
EarI	CTCTTC	2 cut(s)	32, 483
EciI	GGCGGA	1 cut(s)	470
Ecl136II	GAGCTC	1 cut(s)	25
Eco130I	CCWWGG	1 cut(s)	77
Eco24I	GRGCYC	1 cut(s)	27
Eco47I	GGWCC	2 cut(s)	62, 266
Eco47III	AGCGCT	1 cut(s)	207
Eco53kI	GAGCTC	1 cut(s)	25
Eco57I	CTGAAG	1 cut(s)	382
Eco81I	CCTNAGG	2 cut(s)	66, 348
Eco88I	CYCGRG	1 cut(s)	138
EcoICRI	GAGCTC	1 cut(s)	25
EcoRII	CCWGG	1 cut(s)	180
EcoT14I	CCWWGG	1 cut(s)	77
EcoT22I	ATGCAT	1 cut(s)	426
EcoT38I	GRGCYC	1 cut(s)	27
EgeI	GGCGCC	1 cut(s)	43
EheI	GGCGCC	1 cut(s)	43
ErhI	CCWWGG	1 cut(s)	77
FaiI	YATR	8 cut(s)	16, 126, 234, 257, 272, 422, 426, 444
FalI	AAGNNNNNCTT	4 cut(s)	192, 224, 486, 518
FauI	CCCGC	1 cut(s)	88
FblI	GTMKAC	1 cut(s)	365
Fnu4HI	GCNGC	3 cut(s)	51, 164, 465
FriOI	GRGCYC	1 cut(s)	27
Fsp4HI	GCNGC	3 cut(s)	51, 164, 465
FspBI	CTAG	3 cut(s)	56, 327, 372
GlaI	GCGC	3 cut(s)	43, 207, 553
GluI	GCNGC	3 cut(s)	51, 164, 465
HaeII	RGCGCY	2 cut(s)	45, 209
HaeIII	GGCC	2 cut(s)	137, 144
HapII	CCGG	2 cut(s)	139, 264
HhaI	GCGC	3 cut(s)	44, 208, 554
Hin1I	GRCGYC	1 cut(s)	42
Hin6I	GCGC	3 cut(s)	42, 206, 552
HinP1I	GCGC	3 cut(s)	42, 206, 552
HincII	GTYRAC	2 cut(s)	105, 366
HindII	GTYRAC	2 cut(s)	105, 366
HinfI	GANTC	7 cut(s)	221, 226, 259, 274, 343, 410, 458
HpaI	GTTAAC	1 cut(s)	105
HpaII	CCGG	2 cut(s)	139, 264
Hpy166II	GTNNAC	2 cut(s)	105, 366
Hpy188I	TCNGA	4 cut(s)	62, 401, 409, 595
Hpy188III	TCNNGA	2 cut(s)	34, 200
Hpy8I	GTNNAC	2 cut(s)	105, 366
Hpy99I	CGWCG	1 cut(s)	370
HpyAV	CCTTC	1 cut(s)	581
HpyCH4IV	ACGT	1 cut(s)	316
HpyCH4V	TGCA	2 cut(s)	163, 424
HpyF10VI	GCNNNNNNNGC	8 cut(s)	50, 92, 452, 461, 473, 551, 629, 638
HpyF3I	CTNAG	3 cut(s)	66, 297, 348
HpySE526I	ACGT	1 cut(s)	316
Hsp92I	GRCGYC	1 cut(s)	42
HspAI	GCGC	3 cut(s)	42, 206, 552
KasI	GGCGCC	1 cut(s)	41
KspAI	GTTAAC	1 cut(s)	105
Kzo9I	GATC	2 cut(s)	36, 590
LguI	GCTCTTC	1 cut(s)	32
LmnI	GCTCC	2 cut(s)	193, 243
Lsp1109I	GCAGC	2 cut(s)	175, 451
LweI	GCATC	1 cut(s)	150
MaeI	CTAG	3 cut(s)	56, 327, 372
MaeII	ACGT	1 cut(s)	316
MaeIII	GTNAC	1 cut(s)	635
MalI	GATC	2 cut(s)	38, 592
MbiI	CCGCTC	1 cut(s)	53
MboI	GATC	2 cut(s)	36, 590
MboII	GAAGA	2 cut(s)	19, 500
MhlI	GDGCHC	1 cut(s)	27
MluCI	AATT	4 cut(s)	146, 449, 537, 646
Mly113I	GGCGCC	1 cut(s)	42
MlyI	GAGTC	1 cut(s)	268
MmeI	TCCRAC	3 cut(s)	40, 198, 585
MnlI	CCTC	6 cut(s)	41, 292, 346, 415, 445, 619
Mph1103I	ATGCAT	1 cut(s)	426
MseI	TTAA	3 cut(s)	104, 393, 417
MspA1I	CMGCKG	2 cut(s)	133, 545
MspI	CCGG	2 cut(s)	139, 264
MspR9I	CCNGG	4 cut(s)	139, 140, 182, 264
Mva1269I	GAATGC	1 cut(s)	564
MvaI	CCWGG	1 cut(s)	182
MvnI	CGCG	1 cut(s)	552
MwoI	GCNNNNNNNGC	8 cut(s)	50, 92, 452, 461, 473, 551, 629, 638
NarI	GGCGCC	1 cut(s)	42
NciI	CCSGG	3 cut(s)	139, 140, 264
NdeII	GATC	2 cut(s)	36, 590
NlaIV	GGNNCC	3 cut(s)	43, 143, 245
NsiI	ATGCAT	1 cut(s)	426
PciSI	GCTCTTC	1 cut(s)	32
PctI	GAATGC	1 cut(s)	564
PfeI	GAWTC	6 cut(s)	221, 226, 259, 343, 410, 458
PflMI	CCANNNNNTGG	1 cut(s)	320
PkrI	GCNGC	3 cut(s)	52, 165, 466
PleI	GAGTC	1 cut(s)	268
PluTI	GGCGCC	1 cut(s)	45
PpsI	GAGTC	1 cut(s)	268
Ppu21I	YACGTR	1 cut(s)	317
Psp124BI	GAGCTC	1 cut(s)	27
Psp6I	CCWGG	1 cut(s)	180
PspGI	CCWGG	1 cut(s)	180
PspN4I	GGNNCC	3 cut(s)	43, 143, 245
PspPI	GGNCC	4 cut(s)	62, 136, 142, 266
PvuII	CAGCTG	2 cut(s)	133, 545
SacI	GAGCTC	1 cut(s)	27
SalI	GTCGAC	1 cut(s)	364
SapI	GCTCTTC	1 cut(s)	32
SaqAI	TTAA	3 cut(s)	104, 393, 417
SatI	GCNGC	3 cut(s)	51, 164, 465
Sau3AI	GATC	2 cut(s)	36, 590
Sau96I	GGNCC	4 cut(s)	62, 136, 142, 266
SchI	GAGTC	1 cut(s)	268
ScrFI	CCNGG	4 cut(s)	139, 140, 182, 264
SduI	GDGCHC	1 cut(s)	27
SfaNI	GCATC	1 cut(s)	150
SfoI	GGCGCC	1 cut(s)	43
SinI	GGWCC	2 cut(s)	62, 266
SmaI	CCCGGG	1 cut(s)	140
SmlI	CTYRAG	1 cut(s)	171
SmoI	CTYRAG	1 cut(s)	171
Sse9I	AATT	4 cut(s)	146, 449, 537, 646
SsiI	CCGC	6 cut(s)	48, 51, 95, 100, 455, 611
SspDI	GGCGCC	1 cut(s)	41
SspI	AATATT	1 cut(s)	391
SspMI	CTAG	3 cut(s)	56, 327, 372
SstI	GAGCTC	1 cut(s)	27
StyD4I	CCNGG	4 cut(s)	137, 138, 180, 262
StyI	CCWWGG	1 cut(s)	77
TaiI	ACGT	1 cut(s)	319
TaqI	TCGA	4 cut(s)	150, 224, 277, 365
TaqII	GACCGA	1 cut(s)	102
TasI	AATT	4 cut(s)	146, 449, 537, 646
TauI	GCSGC	1 cut(s)	53
TfiI	GAWTC	6 cut(s)	221, 226, 259, 343, 410, 458
Tru1I	TTAA	3 cut(s)	104, 393, 417
Tru9I	TTAA	3 cut(s)	104, 393, 417
TscAI	CASTG	1 cut(s)	490
TseI	GCWGC	2 cut(s)	163, 464
TspDTI	ATGAA	3 cut(s)	249, 272, 525
TspMI	CCCGGG	1 cut(s)	138
TspRI	CASTG	1 cut(s)	490
Van91I	CCANNNNNTGG	1 cut(s)	320
VpaK11BI	GGWCC	2 cut(s)	62, 266
XapI	RAATTY	1 cut(s)	646
XmaI	CCCGGG	1 cut(s)	138
XmiI	GTMKAC	1 cut(s)	365
XspI	CTAG	3 cut(s)	56, 327, 372
Zsp2I	ATGCAT	1 cut(s)	426

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.