Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr04

Orthogroup ID

OG0004134

Physical Location & Seq

Genomic Coordinates Reverse (-)

3041861 .. 3046122

Gene Structure 4262 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD04G1026200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 582 bp

ATGTTCGGTATTTCGTACGGAGAGCTCTTCCTCTTGATCGGTGCCACAGCTGCTCTAGTCGGACCAAAGGATTTGCCTAGAATTGCCAGAGCAGCAGGGAGGTTAGCGGGTCGGTCCATCGGGTATGTTCAGTTGGCTCGAGGCCAATTCGATAATGTTATGCAGCAGTCTCAAGCTCGCCAGGTTCATAAAGAGCTTCAAGATGCATTGGCTCAGCTAGAGTCGATTCGTTATGAAGTCCGAAGCATATCACTTATGAACCCGGGTCCTATGACTCGAAAGCTGATTGATAATATTCAAGACCCGGCTCCTTTGAGCAGTGGAACCAACATTTCACTTGAGAAGTCCAAGGAGGAGCAGAAATCAATAAATAGTGATAGTACTTTGAGAACCTCCGACGCACCTAATTTTCATAGTCAAGCAACTGCATATGCAAAATTGGCTGAATCTGATACTGTGAAGACTGGCACTTTAAAAAGCAGTGCAGAGAAAGATGACCTTTATGATGAGAGTGGTCTTTTCATTGTTCTCCCAATTTCAGCTGAAAGCACTGGGATGCTACCAAATCGCAAGGAATGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

194

Amino Acids

20.99

Weight (kDa)

6.15

Isoelectric Point (pI)

40.2

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004134)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G43680 AT5G43680
fragaria_vesca	FvH4_4g02310
malus_domestica	MD04G1026200.v1.1
prunus_persica	Prupe.1G027700_v2.0.a1 Prupe.1G027700_v2.0.a1 Prupe.1G027700_v2.0.a1 Prupe.1G027700_v2.0.a1 Prupe.1G175900_v2.0.a1 Prupe.1G175900_v2.0.a1 Prupe.1G175900_v2.0.a1 Prupe.1G175900_v2.0.a1 Prupe.1G175900_v2.0.a1 Prupe.2G050700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0389631
rosa_laevigata	RLG00000009965 RLG00000019817
rosa_multiflora	Rmu_sc0007419.1_g000005 Rmu_sc0034173.1_g000001
rosa_roxburghii	Rroxscaffold_5G00335620
rosa_rugosa	Rorug02G0358300 Rorug03G0324300 Rorug03G0324400 Rorug03G0324500 Rorug03G0324600
rosa_samantha	Rh2AG407700 Rh2CG393700 Rh2DG427400 Rh4AG029100 Rh4BG022300 Rh4CG031100 Rh4DG022800
rosa_wichuraiana	Rw4G002170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	41
AciI	CCGC	1 cut(s)	107
AfaI	GTAC	2 cut(s)	17, 382
AgsI	TTSAA	2 cut(s)	200, 299
AjnI	CCWGG	1 cut(s)	180
AluBI	AGCT	7 cut(s)	25, 50, 176, 196, 217, 283, 542
AluI	AGCT	7 cut(s)	25, 50, 176, 196, 217, 283, 542
Alw21I	GWGCWC	1 cut(s)	27
Alw26I	GTCTC	1 cut(s)	174
Ama87I	CYCGRG	2 cut(s)	138, 262
AoxI	GGCC	1 cut(s)	142
ApeKI	GCWGC	3 cut(s)	50, 92, 163
AspS9I	GGNCC	3 cut(s)	62, 114, 266
AsuC2I	CCSGG	3 cut(s)	263, 264, 305
AvaI	CYCGRG	2 cut(s)	138, 262
AvaII	GGWCC	3 cut(s)	62, 114, 266
BanI	GGYRCC	1 cut(s)	41
BanII	GRGCYC	1 cut(s)	27
BbsI	GAAGAC	1 cut(s)	467
Bbv12I	GWGCWC	1 cut(s)	27
BbvI	GCAGC	3 cut(s)	37, 104, 175
BccI	CCATC	1 cut(s)	125
BciT130I	CCWGG	1 cut(s)	182
BcnI	CCSGG	3 cut(s)	263, 264, 305
BcoDI	GTCTC	1 cut(s)	174
BfaI	CTAG	3 cut(s)	56, 78, 218
BisI	GCNGC	3 cut(s)	51, 93, 164
BlpI	GCTNAGC	1 cut(s)	213
BlsI	GCNGC	3 cut(s)	52, 94, 165
BmcAI	AGTACT	1 cut(s)	382
Bme1390I	CCNGG	4 cut(s)	182, 263, 264, 305
Bme18I	GGWCC	3 cut(s)	62, 114, 266
BmeT110I	CYCGRG	2 cut(s)	138, 262
BmgT120I	GGNCC	3 cut(s)	62, 114, 266
BmiI	GGNNCC	4 cut(s)	43, 267, 309, 325
BmrFI	CCNGG	4 cut(s)	182, 263, 264, 305
BmrI	ACTGGG	1 cut(s)	561
BmsI	GCATC	2 cut(s)	193, 546
BmuI	ACTGGG	1 cut(s)	561
BpiI	GAAGAC	1 cut(s)	467
Bpu1102I	GCTNAGC	1 cut(s)	213
BpuEI	CTTGAG	2 cut(s)	156, 359
BpuMI	CCSGG	3 cut(s)	263, 264, 305
BsaJI	CCNNGG	2 cut(s)	262, 348
Bse1I	ACTGG	2 cut(s)	469, 556
BseBI	CCWGG	1 cut(s)	182
BseDI	CCNNGG	2 cut(s)	262, 348
BseGI	GGATG	1 cut(s)	561
BseMII	CTCAG	1 cut(s)	227
BseNI	ACTGG	2 cut(s)	469, 556
BseRI	GAGGAG	1 cut(s)	368
BseXI	GCAGC	3 cut(s)	37, 104, 175
BsgI	GTGCAG	1 cut(s)	504
BshFI	GGCC	1 cut(s)	144
BshNI	GGYRCC	1 cut(s)	41
BsiHKAI	GWGCWC	1 cut(s)	27
BsiHKCI	CYCGRG	2 cut(s)	138, 262
BsiSI	CCGG	2 cut(s)	263, 305
BsiWI	CGTACG	1 cut(s)	15
BsmAI	GTCTC	1 cut(s)	174
BsnI	GGCC	1 cut(s)	144
BsoBI	CYCGRG	2 cut(s)	138, 262
Bsp1286I	GDGCHC	1 cut(s)	27
Bsp143I	GATC	1 cut(s)	36
Bsp1720I	GCTNAGC	1 cut(s)	213
BspACI	CCGC	1 cut(s)	107
BspANI	GGCC	1 cut(s)	144
BspCNI	CTCAG	1 cut(s)	226
BspLI	GGNNCC	4 cut(s)	43, 267, 309, 325
BspQI	GCTCTTC	1 cut(s)	32
BspT107I	GGYRCC	1 cut(s)	41
BsrI	ACTGG	2 cut(s)	469, 556
BssECI	CCNNGG	2 cut(s)	262, 348
BssMI	GATC	1 cut(s)	36
BssT1I	CCWWGG	1 cut(s)	348
Bst2UI	CCWGG	1 cut(s)	182
Bst4CI	ACNGT	1 cut(s)	457
Bst6I	CTCTTC	1 cut(s)	32
BstC8I	GCNNGC	1 cut(s)	178
BstDEI	CTNAG	1 cut(s)	213
BstF5I	GGATG	1 cut(s)	561
BstKTI	GATC	1 cut(s)	39
BstMAI	GTCTC	1 cut(s)	174
BstMBI	GATC	1 cut(s)	36
BstMWI	GCNNNNNNNGC	3 cut(s)	50, 92, 440
BstNI	CCWGG	1 cut(s)	182
BstSCI	CCNGG	4 cut(s)	180, 261, 262, 303
BstV1I	GCAGC	3 cut(s)	37, 104, 175
BstV2I	GAAGAC	1 cut(s)	467
BsuRI	GGCC	1 cut(s)	144
BtsCI	GGATG	1 cut(s)	561
BtsI	GCAGTG	2 cut(s)	325, 487
BtsIMutI	CAGTG	3 cut(s)	325, 487, 549
Cac8I	GCNNGC	1 cut(s)	178
Cfr13I	GGNCC	3 cut(s)	62, 114, 266
Cfr9I	CCCGGG	1 cut(s)	262
CseI	GACGC	1 cut(s)	407
Csp6I	GTAC	2 cut(s)	16, 381
CviQI	GTAC	2 cut(s)	16, 381
DdeI	CTNAG	1 cut(s)	213
DpnI	GATC	1 cut(s)	38
DpnII	GATC	1 cut(s)	36
DraI	TTTAAA	1 cut(s)	474
Eam1104I	CTCTTC	1 cut(s)	32
EarI	CTCTTC	1 cut(s)	32
Ecl136II	GAGCTC	1 cut(s)	25
Eco130I	CCWWGG	1 cut(s)	348
Eco24I	GRGCYC	1 cut(s)	27
Eco47I	GGWCC	3 cut(s)	62, 114, 266
Eco53kI	GAGCTC	1 cut(s)	25
Eco88I	CYCGRG	2 cut(s)	138, 262
EcoICRI	GAGCTC	1 cut(s)	25
EcoO109I	RGGNCCY	1 cut(s)	266
EcoRII	CCWGG	1 cut(s)	180
EcoT14I	CCWWGG	1 cut(s)	348
EcoT22I	ATGCAT	1 cut(s)	208
EcoT38I	GRGCYC	1 cut(s)	27
ErhI	CCWWGG	1 cut(s)	348
FalI	AAGNNNNNCTT	2 cut(s)	483, 515
FauI	CCCGC	1 cut(s)	100
FauNDI	CATATG	1 cut(s)	430
Fnu4HI	GCNGC	3 cut(s)	51, 93, 164
FokI	GGATG	1 cut(s)	568
FriOI	GRGCYC	1 cut(s)	27
Fsp4HI	GCNGC	3 cut(s)	51, 93, 164
FspBI	CTAG	3 cut(s)	56, 78, 218
GluI	GCNGC	3 cut(s)	51, 93, 164
HaeIII	GGCC	1 cut(s)	144
HapII	CCGG	2 cut(s)	263, 305
HgaI	GACGC	1 cut(s)	407
HinfI	GANTC	4 cut(s)	221, 226, 274, 446
HpaII	CCGG	2 cut(s)	263, 305
Hpy188I	TCNGA	4 cut(s)	62, 242, 397, 451
Hpy188III	TCNNGA	3 cut(s)	34, 200, 299
Hpy99I	CGWCG	1 cut(s)	401
HpyCH4III	ACNGT	1 cut(s)	457
HpyCH4V	TGCA	5 cut(s)	163, 206, 428, 434, 485
HpyF10VI	GCNNNNNNNGC	3 cut(s)	50, 92, 440
HpyF3I	CTNAG	1 cut(s)	213
Kzo9I	GATC	1 cut(s)	36
LguI	GCTCTTC	1 cut(s)	32
LmnI	GCTCC	2 cut(s)	313, 355
LpnPI	CCDG	8 cut(s)	81, 100, 167, 194, 276, 318, 450, 537
Lsp1109I	GCAGC	3 cut(s)	37, 104, 175
LweI	GCATC	2 cut(s)	193, 546
MaeI	CTAG	3 cut(s)	56, 78, 218
MalI	GATC	1 cut(s)	38
MboI	GATC	1 cut(s)	36
MboII	GAAGA	2 cut(s)	19, 472
MhlI	GDGCHC	1 cut(s)	27
MluCI	AATT	5 cut(s)	81, 146, 406, 437, 534
MlyI	GAGTC	2 cut(s)	230, 268
MmeI	TCCRAC	2 cut(s)	40, 420
MnlI	CCTC	5 cut(s)	41, 93, 134, 346, 403
Mph1103I	ATGCAT	1 cut(s)	208
MseI	TTAA	2 cut(s)	473, 580
MslI	CAYNNNNRTG	1 cut(s)	554
MspA1I	CMGCKG	2 cut(s)	50, 542
MspI	CCGG	2 cut(s)	263, 305
MspR9I	CCNGG	4 cut(s)	182, 263, 264, 305
MvaI	CCWGG	1 cut(s)	182
MwoI	GCNNNNNNNGC	3 cut(s)	50, 92, 440
NciI	CCSGG	3 cut(s)	263, 264, 305
NdeI	CATATG	1 cut(s)	430
NdeII	GATC	1 cut(s)	36
NlaIV	GGNNCC	4 cut(s)	43, 267, 309, 325
NsiI	ATGCAT	1 cut(s)	208
PaeR7I	CTCGAG	1 cut(s)	138
PciSI	GCTCTTC	1 cut(s)	32
PfeI	GAWTC	2 cut(s)	226, 446
Pfl23II	CGTACG	1 cut(s)	15
PkrI	GCNGC	3 cut(s)	52, 94, 165
PleI	GAGTC	2 cut(s)	229, 268
PpsI	GAGTC	2 cut(s)	229, 268
PpuMI	RGGWCCY	1 cut(s)	266
Psp124BI	GAGCTC	1 cut(s)	27
Psp5II	RGGWCCY	1 cut(s)	266
Psp6I	CCWGG	1 cut(s)	180
PspGI	CCWGG	1 cut(s)	180
PspLI	CGTACG	1 cut(s)	15
PspN4I	GGNNCC	4 cut(s)	43, 267, 309, 325
PspPI	GGNCC	3 cut(s)	62, 114, 266
PspPPI	RGGWCCY	1 cut(s)	266
PspXI	VCTCGAGB	1 cut(s)	138
PvuII	CAGCTG	2 cut(s)	50, 542
RsaI	GTAC	2 cut(s)	17, 382
RsaNI	GTAC	2 cut(s)	16, 381
RseI	CAYNNNNRTG	1 cut(s)	554
SacI	GAGCTC	1 cut(s)	27
SapI	GCTCTTC	1 cut(s)	32
SaqAI	TTAA	2 cut(s)	473, 580
SatI	GCNGC	3 cut(s)	51, 93, 164
Sau3AI	GATC	1 cut(s)	36
Sau96I	GGNCC	3 cut(s)	62, 114, 266
ScaI	AGTACT	1 cut(s)	382
SchI	GAGTC	2 cut(s)	230, 268
ScrFI	CCNGG	4 cut(s)	182, 263, 264, 305
SduI	GDGCHC	1 cut(s)	27
SfaNI	GCATC	2 cut(s)	193, 546
Sfr274I	CTCGAG	1 cut(s)	138
SinI	GGWCC	3 cut(s)	62, 114, 266
SlaI	CTCGAG	1 cut(s)	138
SmaI	CCCGGG	1 cut(s)	264
SmiMI	CAYNNNNRTG	1 cut(s)	554
SmlI	CTYRAG	3 cut(s)	138, 171, 338
SmoI	CTYRAG	3 cut(s)	138, 171, 338
Sse9I	AATT	5 cut(s)	81, 146, 406, 437, 534
SsiI	CCGC	1 cut(s)	107
SspI	AATATT	1 cut(s)	295
SspMI	CTAG	3 cut(s)	56, 78, 218
SstI	GAGCTC	1 cut(s)	27
StyD4I	CCNGG	4 cut(s)	180, 261, 262, 303
StyI	CCWWGG	1 cut(s)	348
TaaI	ACNGT	1 cut(s)	457
TaqI	TCGA	4 cut(s)	139, 150, 224, 277
TaqII	GACCGA	1 cut(s)	102
TasI	AATT	5 cut(s)	81, 146, 406, 437, 534
TatI	WGTACW	1 cut(s)	380
TfiI	GAWTC	2 cut(s)	226, 446
Tru1I	TTAA	2 cut(s)	473, 580
Tru9I	TTAA	2 cut(s)	473, 580
TscAI	CASTG	3 cut(s)	325, 487, 556
TseI	GCWGC	3 cut(s)	50, 92, 163
TspDTI	ATGAA	5 cut(s)	176, 249, 272, 401, 511
TspGWI	ACGGA	1 cut(s)	33
TspMI	CCCGGG	1 cut(s)	262
TspRI	CASTG	3 cut(s)	325, 487, 556
VpaK11BI	GGWCC	3 cut(s)	62, 114, 266
XhoI	CTCGAG	1 cut(s)	138
XmaI	CCCGGG	1 cut(s)	262
XspI	CTAG	3 cut(s)	56, 78, 218
ZrmI	AGTACT	1 cut(s)	382
Zsp2I	ATGCAT	1 cut(s)	208

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.