Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0004134

Physical Location & Seq

Genomic Coordinates Reverse (-)

14846798 .. 14850197

Gene Structure 3400 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G175900.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 687 bp

ATGCTTGGTATTTCGTACGGAGAGCTCTTCCTCTTGATCGGAGCCACAGCTGCTCTAGTCGGACCAAAGGATTTGCCTAGAATCGCTAGAACAGCAGGGAGGTTAGCGGGTCGGTCAATCGGGTATGTTCAGTTAGCTAGAGGCCAATTCGATAATGTTATGCAGCAGTCTCAAGCCCGCCAGGTTCATAAAGAACTTCAAGATGCACTTGCACAACTAGAGTCGATTCGTTATGAAGTCCGGAGTATATCACTTATGAATCCCGGTCCTATGGCTCGAAGGCTGATGGATAATCCTCAAGACCCGGCTCCTCTGAGTGATGGGGCCAATAGTTCACTTGAGAAGCCTAAGGAGGAGCTGAAGTCAAGAAATACTGTGGTGAAGGATGATACTTTCAGAACCTCAGACTCACCTAATTTGCATAGTCAAGCAACTGCGTATGCAAAGTTGGCTGAATCTGATGCCGTGAAGACTGGCTCTTTGAAGAGCAATGCAGAGCAAGAAAACCTTAAAGATGAAAGTGGTCTTTTCGTTGTCCTCCCAATTTCAGCTGAAAGCACTGGGATGCTACCAAATCGCAAAGAGAATGTTAAGGGATCAGACATTGTGTTGGAAGCAATAGTTGAAGCAGAGGTAGCACGTAATGCCAAAGATTTCTTTTCACAGCCTGAAAATCAAGTACAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

229

Amino Acids

24.85

Weight (kDa)

5.57

Isoelectric Point (pI)

36.42

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004134)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G43680 AT5G43680
fragaria_vesca	FvH4_4g02310
malus_domestica	MD04G1026200.v1.1
prunus_persica	Prupe.1G027700_v2.0.a1 Prupe.1G027700_v2.0.a1 Prupe.1G027700_v2.0.a1 Prupe.1G027700_v2.0.a1 Prupe.1G175900_v2.0.a1 Prupe.1G175900_v2.0.a1 Prupe.1G175900_v2.0.a1 Prupe.1G175900_v2.0.a1 Prupe.1G175900_v2.0.a1 Prupe.2G050700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0389631
rosa_laevigata	RLG00000009965 RLG00000019817
rosa_multiflora	Rmu_sc0007419.1_g000005 Rmu_sc0034173.1_g000001
rosa_roxburghii	Rroxscaffold_5G00335620
rosa_rugosa	Rorug02G0358300 Rorug03G0324300 Rorug03G0324400 Rorug03G0324500 Rorug03G0324600
rosa_samantha	Rh2AG407700 Rh2CG393700 Rh2DG427400 Rh4AG029100 Rh4BG022300 Rh4CG031100 Rh4DG022800
rosa_wichuraiana	Rw4G002170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	240
AciI	CCGC	2 cut(s)	107, 178
AclWI	GGATC	1 cut(s)	604
AcuI	CTGAAG	1 cut(s)	380
AfaI	GTAC	2 cut(s)	17, 681
AgsI	TTSAA	3 cut(s)	200, 484, 626
AjnI	CCWGG	1 cut(s)	180
AluBI	AGCT	5 cut(s)	25, 50, 137, 358, 551
AluI	AGCT	5 cut(s)	25, 50, 137, 358, 551
Alw21I	GWGCWC	1 cut(s)	27
Alw26I	GTCTC	1 cut(s)	174
AlwI	GGATC	1 cut(s)	604
Aor13HI	TCCGGA	1 cut(s)	240
AoxI	GGCC	2 cut(s)	142, 324
ApeKI	GCWGC	2 cut(s)	50, 163
ArsI	GACNNNNNNTTYG	2 cut(s)	463, 495
AspS9I	GGNCC	3 cut(s)	62, 266, 324
AsuC2I	CCSGG	2 cut(s)	264, 305
AsuHPI	GGTGA	2 cut(s)	391, 402
AvaII	GGWCC	2 cut(s)	62, 266
AxyI	CCTNAGG	1 cut(s)	348
BanII	GRGCYC	1 cut(s)	27
BbsI	GAAGAC	1 cut(s)	476
Bbv12I	GWGCWC	1 cut(s)	27
BbvI	GCAGC	2 cut(s)	37, 175
BccI	CCATC	2 cut(s)	280, 314
BceAI	ACGGC	1 cut(s)	449
BciT130I	CCWGG	1 cut(s)	182
BcnI	CCSGG	2 cut(s)	264, 305
BcoDI	GTCTC	1 cut(s)	174
BfaI	CTAG	5 cut(s)	56, 78, 87, 138, 218
BisI	GCNGC	2 cut(s)	51, 164
BlsI	GCNGC	2 cut(s)	52, 165
Bme1390I	CCNGG	3 cut(s)	182, 264, 305
Bme18I	GGWCC	2 cut(s)	62, 266
BmgT120I	GGNCC	3 cut(s)	62, 266, 324
BmiI	GGNNCC	3 cut(s)	43, 309, 325
BmrFI	CCNGG	3 cut(s)	182, 264, 305
BmrI	ACTGGG	1 cut(s)	570
BmsI	GCATC	3 cut(s)	193, 451, 555
BmuI	ACTGGG	1 cut(s)	570
BpiI	GAAGAC	1 cut(s)	476
BpuEI	CTTGAG	3 cut(s)	156, 282, 359
BpuMI	CCSGG	2 cut(s)	264, 305
BsaAI	YACGTR	1 cut(s)	641
BsaWI	WCCGGW	1 cut(s)	240
BsaXI	ACNNNNNCTCC	2 cut(s)	347, 377
Bse1I	ACTGG	2 cut(s)	478, 565
Bse21I	CCTNAGG	1 cut(s)	348
Bse3DI	GCAATG	1 cut(s)	496
BseAI	TCCGGA	1 cut(s)	240
BseBI	CCWGG	1 cut(s)	182
BseGI	GGATG	2 cut(s)	391, 570
BseMI	GCAATG	1 cut(s)	496
BseMII	CTCAG	2 cut(s)	305, 417
BseNI	ACTGG	2 cut(s)	478, 565
BseRI	GAGGAG	2 cut(s)	300, 368
BseXI	GCAGC	2 cut(s)	37, 175
BshFI	GGCC	2 cut(s)	144, 326
BsiHKAI	GWGCWC	1 cut(s)	27
BsiSI	CCGG	3 cut(s)	241, 264, 305
BsiWI	CGTACG	1 cut(s)	15
BsmAI	GTCTC	1 cut(s)	174
BsnI	GGCC	2 cut(s)	144, 326
Bsp1286I	GDGCHC	1 cut(s)	27
Bsp13I	TCCGGA	1 cut(s)	240
Bsp143I	GATC	2 cut(s)	36, 596
BspACI	CCGC	2 cut(s)	107, 178
BspANI	GGCC	2 cut(s)	144, 326
BspCNI	CTCAG	2 cut(s)	306, 416
BspEI	TCCGGA	1 cut(s)	240
BspLI	GGNNCC	3 cut(s)	43, 309, 325
BspPI	GGATC	1 cut(s)	604
BspQI	GCTCTTC	2 cut(s)	32, 479
BsrDI	GCAATG	1 cut(s)	496
BsrI	ACTGG	2 cut(s)	478, 565
BssMI	GATC	2 cut(s)	36, 596
Bst2UI	CCWGG	1 cut(s)	182
Bst4CI	ACNGT	2 cut(s)	376, 684
Bst6I	CTCTTC	2 cut(s)	32, 479
BstAPI	GCANNNNNTGC	1 cut(s)	644
BstBAI	YACGTR	1 cut(s)	641
BstC8I	GCNNGC	1 cut(s)	178
BstDEI	CTNAG	3 cut(s)	314, 348, 403
BstF5I	GGATG	2 cut(s)	391, 570
BstKTI	GATC	2 cut(s)	39, 599
BstMAI	GTCTC	1 cut(s)	174
BstMBI	GATC	2 cut(s)	36, 596
BstMWI	GCNNNNNNNGC	5 cut(s)	50, 92, 449, 635, 644
BstNI	CCWGG	1 cut(s)	182
BstSCI	CCNGG	3 cut(s)	180, 262, 303
BstV1I	GCAGC	2 cut(s)	37, 175
BstV2I	GAAGAC	1 cut(s)	476
Bsu36I	CCTNAGG	1 cut(s)	348
BsuRI	GGCC	2 cut(s)	144, 326
BtsCI	GGATG	2 cut(s)	391, 570
BtsIMutI	CAGTG	1 cut(s)	558
Cac8I	GCNNGC	1 cut(s)	178
Cfr13I	GGNCC	3 cut(s)	62, 266, 324
Csp6I	GTAC	2 cut(s)	16, 680
CviQI	GTAC	2 cut(s)	16, 680
DdeI	CTNAG	3 cut(s)	314, 348, 403
DpnI	GATC	2 cut(s)	38, 598
DpnII	GATC	2 cut(s)	36, 596
Eam1104I	CTCTTC	2 cut(s)	32, 479
EarI	CTCTTC	2 cut(s)	32, 479
Ecl136II	GAGCTC	1 cut(s)	25
Eco24I	GRGCYC	1 cut(s)	27
Eco47I	GGWCC	2 cut(s)	62, 266
Eco53kI	GAGCTC	1 cut(s)	25
Eco57I	CTGAAG	1 cut(s)	380
Eco81I	CCTNAGG	1 cut(s)	348
EcoICRI	GAGCTC	1 cut(s)	25
EcoRII	CCWGG	1 cut(s)	180
EcoT38I	GRGCYC	1 cut(s)	27
FaiI	YATR	9 cut(s)	126, 161, 189, 234, 248, 257, 272, 423, 441
FalI	AAGNNNNNCTT	4 cut(s)	192, 224, 492, 524
FauI	CCCGC	2 cut(s)	100, 185
Fnu4HI	GCNGC	2 cut(s)	51, 164
FokI	GGATG	2 cut(s)	398, 577
FriOI	GRGCYC	1 cut(s)	27
Fsp4HI	GCNGC	2 cut(s)	51, 164
FspBI	CTAG	5 cut(s)	56, 78, 87, 138, 218
GluI	GCNGC	2 cut(s)	51, 164
HaeIII	GGCC	2 cut(s)	144, 326
HapII	CCGG	3 cut(s)	241, 264, 305
HinfI	GANTC	6 cut(s)	81, 221, 226, 259, 407, 455
HpaII	CCGG	3 cut(s)	241, 264, 305
HphI	GGTGA	2 cut(s)	391, 402
Hpy166II	GTNNAC	1 cut(s)	335
Hpy188I	TCNGA	7 cut(s)	41, 62, 315, 398, 406, 460, 601
Hpy188III	TCNNGA	5 cut(s)	34, 200, 241, 299, 366
Hpy8I	GTNNAC	1 cut(s)	335
HpyAV	CCTTC	2 cut(s)	273, 376
HpyCH4III	ACNGT	2 cut(s)	376, 684
HpyCH4IV	ACGT	1 cut(s)	640
HpyCH4V	TGCA	6 cut(s)	163, 206, 212, 421, 443, 494
HpyF10VI	GCNNNNNNNGC	5 cut(s)	50, 92, 449, 635, 644
HpyF3I	CTNAG	3 cut(s)	314, 348, 403
HpySE526I	ACGT	1 cut(s)	640
Kpn2I	TCCGGA	1 cut(s)	240
Kzo9I	GATC	2 cut(s)	36, 596
LguI	GCTCTTC	2 cut(s)	32, 479
LmnI	GCTCC	3 cut(s)	41, 313, 355
LpnPI	CCDG	9 cut(s)	81, 167, 194, 254, 277, 318, 459, 546, 681
Lsp1109I	GCAGC	2 cut(s)	37, 175
LweI	GCATC	3 cut(s)	193, 451, 555
MaeI	CTAG	5 cut(s)	56, 78, 87, 138, 218
MaeII	ACGT	1 cut(s)	640
MalI	GATC	2 cut(s)	38, 598
MboI	GATC	2 cut(s)	36, 596
MboII	GAAGA	3 cut(s)	19, 481, 496
MhlI	GDGCHC	1 cut(s)	27
MluCI	AATT	3 cut(s)	146, 415, 543
MlyI	GAGTC	2 cut(s)	230, 401
MmeI	TCCRAC	2 cut(s)	40, 591
MnlI	CCTC	9 cut(s)	41, 93, 134, 306, 321, 346, 412, 548, 625
MroI	TCCGGA	1 cut(s)	240
MseI	TTAA	2 cut(s)	510, 591
MslI	CAYNNNNRTG	1 cut(s)	563
MspA1I	CMGCKG	2 cut(s)	50, 551
MspI	CCGG	3 cut(s)	241, 264, 305
MspR9I	CCNGG	3 cut(s)	182, 264, 305
MvaI	CCWGG	1 cut(s)	182
MwoI	GCNNNNNNNGC	5 cut(s)	50, 92, 449, 635, 644
NciI	CCSGG	2 cut(s)	264, 305
NdeII	GATC	2 cut(s)	36, 596
NlaIV	GGNNCC	3 cut(s)	43, 309, 325
PciSI	GCTCTTC	2 cut(s)	32, 479
PfeI	GAWTC	4 cut(s)	81, 226, 259, 455
Pfl23II	CGTACG	1 cut(s)	15
PkrI	GCNGC	2 cut(s)	52, 165
PleI	GAGTC	2 cut(s)	229, 401
PpsI	GAGTC	2 cut(s)	229, 401
Ppu21I	YACGTR	1 cut(s)	641
Psp124BI	GAGCTC	1 cut(s)	27
Psp6I	CCWGG	1 cut(s)	180
PspGI	CCWGG	1 cut(s)	180
PspLI	CGTACG	1 cut(s)	15
PspN4I	GGNNCC	3 cut(s)	43, 309, 325
PspPI	GGNCC	3 cut(s)	62, 266, 324
PvuII	CAGCTG	2 cut(s)	50, 551
RsaI	GTAC	2 cut(s)	17, 681
RsaNI	GTAC	2 cut(s)	16, 680
RseI	CAYNNNNRTG	1 cut(s)	563
SacI	GAGCTC	1 cut(s)	27
SapI	GCTCTTC	2 cut(s)	32, 479
SaqAI	TTAA	2 cut(s)	510, 591
SatI	GCNGC	2 cut(s)	51, 164
Sau3AI	GATC	2 cut(s)	36, 596
Sau96I	GGNCC	3 cut(s)	62, 266, 324
SchI	GAGTC	2 cut(s)	230, 401
ScrFI	CCNGG	3 cut(s)	182, 264, 305
SduI	GDGCHC	1 cut(s)	27
SfaNI	GCATC	3 cut(s)	193, 451, 555
SinI	GGWCC	2 cut(s)	62, 266
SmiMI	CAYNNNNRTG	1 cut(s)	563
SmlI	CTYRAG	3 cut(s)	171, 297, 338
SmoI	CTYRAG	3 cut(s)	171, 297, 338
Sse9I	AATT	3 cut(s)	146, 415, 543
SsiI	CCGC	2 cut(s)	107, 178
SspMI	CTAG	5 cut(s)	56, 78, 87, 138, 218
SstI	GAGCTC	1 cut(s)	27
StyD4I	CCNGG	3 cut(s)	180, 262, 303
TaaI	ACNGT	2 cut(s)	376, 684
TaiI	ACGT	1 cut(s)	643
TaqI	TCGA	3 cut(s)	150, 224, 277
TaqII	GACCGA	1 cut(s)	102
TasI	AATT	3 cut(s)	146, 415, 543
TatI	WGTACW	1 cut(s)	679
TfiI	GAWTC	4 cut(s)	81, 226, 259, 455
Tru1I	TTAA	2 cut(s)	510, 591
Tru9I	TTAA	2 cut(s)	510, 591
TscAI	CASTG	1 cut(s)	565
TseI	GCWGC	2 cut(s)	50, 163
TspDTI	ATGAA	4 cut(s)	176, 249, 272, 531
TspGWI	ACGGA	1 cut(s)	33
TspRI	CASTG	1 cut(s)	565
VpaK11BI	GGWCC	2 cut(s)	62, 266
XspI	CTAG	5 cut(s)	56, 78, 87, 138, 218

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.