Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0004134

Physical Location & Seq

Genomic Coordinates Reverse (-)

3739282 .. 3741150

Gene Structure 1869 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG022800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 690 bp

ATGTTTGGTATTTCGTACGGCGAGCTCTTCCTCTTGATCGGAGCCACCGCTGCTTTAGTCGGACCAAAAGATTTGCCTAGGATTGCAAGAATGGCGGGGCGGTTAGCGGGTCGGTCAATCGGGTATGTCCAGTTAGCTCGGGGCCAATTCGACAATGTAATGCAGCAATCACAGGCTCGCCAGGTTCAAAAGGAACTTCAAGATGCGCTTGCACAGTTAGATTCGATTCGTTATGAAGTACGAAGTCTGTCGCTTATAAACCCCGGTCCTATGACTCGAAAGCTGATGGCAAATGCTGAGGAACTAGCCGCTCCACGTAATGGGGCCGACAGTTCAATCGAGAATACTAAGGAGGAAGTGAAGTTGACGACTAGTGTGATCAAGGATAATATTAACTTCAGAACATCAGAATCACTTAATTTGCATACACAAGCCACTGCATATGCTAAATTGGCTGAATCTGCTGCTGTGAAAACTGGCTCTTTGAAAAGTAATGAAGAGAAAGAGAGCCTTATTGATGAAAATGGCCTTTTCACTGTTCTCCCAATTTCAGCTGAAAGCACCGGAATGCTACCAAAACGCAAGGAAAATGTTGAAGGATCGGACATTGTGTTGGAAGCAGTACTTGAAGCAGAGGTAGCACGTAACGCCAAAGATTTCTTTTCACAGCCTGAAAATCAAATACAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

229

Amino Acids

25.0

Weight (kDa)

5.29

Isoelectric Point (pI)

33.24

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004134)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G43680 AT5G43680
fragaria_vesca	FvH4_4g02310
malus_domestica	MD04G1026200.v1.1
prunus_persica	Prupe.1G027700_v2.0.a1 Prupe.1G027700_v2.0.a1 Prupe.1G027700_v2.0.a1 Prupe.1G027700_v2.0.a1 Prupe.1G175900_v2.0.a1 Prupe.1G175900_v2.0.a1 Prupe.1G175900_v2.0.a1 Prupe.1G175900_v2.0.a1 Prupe.1G175900_v2.0.a1 Prupe.2G050700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0389631
rosa_laevigata	RLG00000009965 RLG00000019817
rosa_multiflora	Rmu_sc0007419.1_g000005 Rmu_sc0034173.1_g000001
rosa_roxburghii	Rroxscaffold_5G00335620
rosa_rugosa	Rorug02G0358300 Rorug03G0324300 Rorug03G0324400 Rorug03G0324500 Rorug03G0324600
rosa_samantha	Rh2AG407700 Rh2CG393700 Rh2DG427400 Rh4AG029100 Rh4BG022300 Rh4CG031100 Rh4DG022800
rosa_wichuraiana	Rw4G002170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	257
AccB7I	CCANNNNNTGG	1 cut(s)	320
AccBSI	CCGCTC	1 cut(s)	311
AciI	CCGC	5 cut(s)	48, 95, 100, 107, 309
AclWI	GGATC	1 cut(s)	607
AcuI	CTGAAG	1 cut(s)	382
AfaI	GTAC	3 cut(s)	17, 240, 624
AfiI	CCNNNNNNNGG	1 cut(s)	320
AgsI	TTSAA	6 cut(s)	188, 200, 336, 487, 596, 629
AhlI	ACTAGT	1 cut(s)	371
AjnI	CCWGG	1 cut(s)	180
AluBI	AGCT	4 cut(s)	25, 137, 283, 554
AluI	AGCT	4 cut(s)	25, 137, 283, 554
Alw21I	GWGCWC	1 cut(s)	27
AlwI	GGATC	1 cut(s)	607
Ama87I	CYCGRG	1 cut(s)	138
AoxI	GGCC	3 cut(s)	142, 324, 526
ApeKI	GCWGC	3 cut(s)	50, 163, 464
AspA2I	CCTAGG	1 cut(s)	77
AspLEI	GCGC	1 cut(s)	208
AspS9I	GGNCC	4 cut(s)	62, 142, 266, 324
AsuC2I	CCSGG	1 cut(s)	264
AvaI	CYCGRG	1 cut(s)	138
AvaII	GGWCC	2 cut(s)	62, 266
AvrII	CCTAGG	1 cut(s)	77
BanII	GRGCYC	1 cut(s)	27
Bbv12I	GWGCWC	1 cut(s)	27
BbvCI	CCTCAGC	1 cut(s)	297
BbvI	GCAGC	3 cut(s)	37, 175, 451
BccI	CCATC	1 cut(s)	280
BceAI	ACGGC	1 cut(s)	34
BciT130I	CCWGG	1 cut(s)	182
BclI	TGATCA	1 cut(s)	378
BcnI	CCSGG	1 cut(s)	264
BcuI	ACTAGT	1 cut(s)	371
BfaI	CTAG	3 cut(s)	78, 305, 372
BisI	GCNGC	4 cut(s)	51, 164, 309, 465
BlnI	CCTAGG	1 cut(s)	77
BlsI	GCNGC	4 cut(s)	52, 165, 310, 466
BmcAI	AGTACT	1 cut(s)	624
Bme1390I	CCNGG	2 cut(s)	182, 264
Bme18I	GGWCC	2 cut(s)	62, 266
BmeT110I	CYCGRG	1 cut(s)	138
BmgT120I	GGNCC	4 cut(s)	62, 142, 266, 324
BmiI	GGNNCC	3 cut(s)	43, 143, 325
BmrFI	CCNGG	2 cut(s)	182, 264
BmsI	GCATC	1 cut(s)	193
Bpu10I	CCTNAGC	1 cut(s)	297
BpuMI	CCSGG	1 cut(s)	264
BsaAI	YACGTR	2 cut(s)	317, 644
BsaJI	CCNNGG	2 cut(s)	77, 262
BsaWI	WCCGGW	1 cut(s)	563
Bsc4I	CCNNNNNNNGG	1 cut(s)	320
Bse1I	ACTGG	2 cut(s)	130, 481
BseBI	CCWGG	1 cut(s)	182
BseDI	CCNNGG	2 cut(s)	77, 262
BseLI	CCNNNNNNNGG	1 cut(s)	320
BseMII	CTCAG	1 cut(s)	288
BseNI	ACTGG	2 cut(s)	130, 481
BseXI	GCAGC	3 cut(s)	37, 175, 451
BshFI	GGCC	3 cut(s)	144, 326, 528
BsiHKAI	GWGCWC	1 cut(s)	27
BsiHKCI	CYCGRG	1 cut(s)	138
BsiSI	CCGG	2 cut(s)	264, 564
BsiWI	CGTACG	1 cut(s)	15
BslI	CCNNNNNNNGG	1 cut(s)	320
BsmI	GAATGC	1 cut(s)	573
BsnI	GGCC	3 cut(s)	144, 326, 528
BsoBI	CYCGRG	1 cut(s)	138
Bsp1286I	GDGCHC	1 cut(s)	27
Bsp143I	GATC	3 cut(s)	36, 378, 599
BspACI	CCGC	5 cut(s)	48, 95, 100, 107, 309
BspANI	GGCC	3 cut(s)	144, 326, 528
BspCNI	CTCAG	1 cut(s)	289
BspLI	GGNNCC	3 cut(s)	43, 143, 325
BspPI	GGATC	1 cut(s)	607
BspQI	GCTCTTC	1 cut(s)	32
BsrBI	CCGCTC	1 cut(s)	311
BsrI	ACTGG	2 cut(s)	130, 481
BssECI	CCNNGG	2 cut(s)	77, 262
BssMI	GATC	3 cut(s)	36, 378, 599
BssT1I	CCWWGG	1 cut(s)	77
Bst2UI	CCWGG	1 cut(s)	182
Bst4CI	ACNGT	3 cut(s)	216, 332, 538
Bst6I	CTCTTC	2 cut(s)	32, 492
BstBAI	YACGTR	2 cut(s)	317, 644
BstC8I	GCNNGC	3 cut(s)	23, 178, 210
BstDEI	CTNAG	2 cut(s)	297, 348
BstHHI	GCGC	1 cut(s)	208
BstKTI	GATC	3 cut(s)	39, 381, 602
BstMBI	GATC	3 cut(s)	36, 378, 599
BstMWI	GCNNNNNNNGC	6 cut(s)	50, 92, 452, 461, 638, 647
BstNI	CCWGG	1 cut(s)	182
BstSCI	CCNGG	2 cut(s)	180, 262
BstV1I	GCAGC	3 cut(s)	37, 175, 451
BsuRI	GGCC	3 cut(s)	144, 326, 528
BtsI	GCAGTG	1 cut(s)	435
BtsIMutI	CAGTG	2 cut(s)	435, 534
Cac8I	GCNNGC	3 cut(s)	23, 178, 210
CfoI	GCGC	1 cut(s)	208
Cfr13I	GGNCC	4 cut(s)	62, 142, 266, 324
Csp6I	GTAC	3 cut(s)	16, 239, 623
CviQI	GTAC	3 cut(s)	16, 239, 623
DdeI	CTNAG	2 cut(s)	297, 348
DpnI	GATC	3 cut(s)	38, 380, 601
DpnII	GATC	3 cut(s)	36, 378, 599
Eam1104I	CTCTTC	2 cut(s)	32, 492
EarI	CTCTTC	2 cut(s)	32, 492
Ecl136II	GAGCTC	1 cut(s)	25
Eco130I	CCWWGG	1 cut(s)	77
Eco24I	GRGCYC	1 cut(s)	27
Eco47I	GGWCC	2 cut(s)	62, 266
Eco53kI	GAGCTC	1 cut(s)	25
Eco57I	CTGAAG	1 cut(s)	382
Eco88I	CYCGRG	1 cut(s)	138
EcoICRI	GAGCTC	1 cut(s)	25
EcoRII	CCWGG	1 cut(s)	180
EcoT14I	CCWWGG	1 cut(s)	77
EcoT38I	GRGCYC	1 cut(s)	27
ErhI	CCWWGG	1 cut(s)	77
FaiI	YATR	7 cut(s)	126, 234, 257, 272, 426, 442, 444
FalI	AAGNNNNNCTT	6 cut(s)	192, 224, 495, 527, 609, 641
FauI	CCCGC	2 cut(s)	88, 100
FauNDI	CATATG	1 cut(s)	442
FbaI	TGATCA	1 cut(s)	378
Fnu4HI	GCNGC	4 cut(s)	51, 164, 309, 465
FriOI	GRGCYC	1 cut(s)	27
Fsp4HI	GCNGC	4 cut(s)	51, 164, 309, 465
FspBI	CTAG	3 cut(s)	78, 305, 372
GlaI	GCGC	1 cut(s)	207
GluI	GCNGC	4 cut(s)	51, 164, 309, 465
HaeIII	GGCC	3 cut(s)	144, 326, 528
HapII	CCGG	2 cut(s)	264, 564
HhaI	GCGC	1 cut(s)	208
Hin6I	GCGC	1 cut(s)	206
HinP1I	GCGC	1 cut(s)	206
HincII	GTYRAC	1 cut(s)	366
HindII	GTYRAC	1 cut(s)	366
HinfI	GANTC	5 cut(s)	221, 226, 274, 410, 458
HpaII	CCGG	2 cut(s)	264, 564
Hpy166II	GTNNAC	1 cut(s)	366
Hpy188I	TCNGA	5 cut(s)	41, 62, 401, 409, 604
Hpy188III	TCNNGA	3 cut(s)	34, 200, 340
Hpy8I	GTNNAC	1 cut(s)	366
HpyAV	CCTTC	1 cut(s)	590
HpyCH4III	ACNGT	3 cut(s)	216, 332, 538
HpyCH4IV	ACGT	2 cut(s)	316, 643
HpyCH4V	TGCA	5 cut(s)	86, 163, 212, 424, 440
HpyF10VI	GCNNNNNNNGC	6 cut(s)	50, 92, 452, 461, 638, 647
HpyF3I	CTNAG	2 cut(s)	297, 348
HpySE526I	ACGT	2 cut(s)	316, 643
HspAI	GCGC	1 cut(s)	206
Ksp22I	TGATCA	1 cut(s)	378
Kzo9I	GATC	3 cut(s)	36, 378, 599
LguI	GCTCTTC	1 cut(s)	32
LmnI	GCTCC	2 cut(s)	41, 316
LpnPI	CCDG	8 cut(s)	143, 158, 167, 194, 277, 462, 577, 684
Lsp1109I	GCAGC	3 cut(s)	37, 175, 451
LweI	GCATC	1 cut(s)	193
MaeI	CTAG	3 cut(s)	78, 305, 372
MaeII	ACGT	2 cut(s)	316, 643
MaeIII	GTNAC	1 cut(s)	644
MalI	GATC	3 cut(s)	38, 380, 601
MbiI	CCGCTC	1 cut(s)	311
MboI	GATC	3 cut(s)	36, 378, 599
MboII	GAAGA	2 cut(s)	19, 509
MhlI	GDGCHC	1 cut(s)	27
MluCI	AATT	4 cut(s)	146, 418, 449, 546
MlyI	GAGTC	1 cut(s)	268
MmeI	TCCRAC	2 cut(s)	40, 594
MnlI	CCTC	4 cut(s)	41, 292, 346, 628
MseI	TTAA	2 cut(s)	393, 417
MslI	CAYNNNNRTG	1 cut(s)	566
MspA1I	CMGCKG	2 cut(s)	50, 554
MspI	CCGG	2 cut(s)	264, 564
MspR9I	CCNGG	2 cut(s)	182, 264
Mva1269I	GAATGC	1 cut(s)	573
MvaI	CCWGG	1 cut(s)	182
MwoI	GCNNNNNNNGC	6 cut(s)	50, 92, 452, 461, 638, 647
NciI	CCSGG	1 cut(s)	264
NdeI	CATATG	1 cut(s)	442
NdeII	GATC	3 cut(s)	36, 378, 599
NlaIV	GGNNCC	3 cut(s)	43, 143, 325
PciSI	GCTCTTC	1 cut(s)	32
PctI	GAATGC	1 cut(s)	573
PfeI	GAWTC	4 cut(s)	221, 226, 410, 458
Pfl23II	CGTACG	1 cut(s)	15
PflMI	CCANNNNNTGG	1 cut(s)	320
PkrI	GCNGC	4 cut(s)	52, 165, 310, 466
PleI	GAGTC	1 cut(s)	268
PpsI	GAGTC	1 cut(s)	268
Ppu21I	YACGTR	2 cut(s)	317, 644
PsiI	TTATAA	1 cut(s)	257
Psp124BI	GAGCTC	1 cut(s)	27
Psp6I	CCWGG	1 cut(s)	180
PspGI	CCWGG	1 cut(s)	180
PspLI	CGTACG	1 cut(s)	15
PspN4I	GGNNCC	3 cut(s)	43, 143, 325
PspPI	GGNCC	4 cut(s)	62, 142, 266, 324
PvuII	CAGCTG	1 cut(s)	554
RsaI	GTAC	3 cut(s)	17, 240, 624
RsaNI	GTAC	3 cut(s)	16, 239, 623
RseI	CAYNNNNRTG	1 cut(s)	566
SacI	GAGCTC	1 cut(s)	27
SapI	GCTCTTC	1 cut(s)	32
SaqAI	TTAA	2 cut(s)	393, 417
SatI	GCNGC	4 cut(s)	51, 164, 309, 465
Sau3AI	GATC	3 cut(s)	36, 378, 599
Sau96I	GGNCC	4 cut(s)	62, 142, 266, 324
ScaI	AGTACT	1 cut(s)	624
SchI	GAGTC	1 cut(s)	268
ScrFI	CCNGG	2 cut(s)	182, 264
SduI	GDGCHC	1 cut(s)	27
SetI	ASST	8 cut(s)	27, 139, 186, 285, 319, 556, 639, 646
SfaNI	GCATC	1 cut(s)	193
SinI	GGWCC	2 cut(s)	62, 266
SmiMI	CAYNNNNRTG	1 cut(s)	566
SpeI	ACTAGT	1 cut(s)	371
Sse9I	AATT	4 cut(s)	146, 418, 449, 546
SsiI	CCGC	5 cut(s)	48, 95, 100, 107, 309
SspI	AATATT	1 cut(s)	391
SspMI	CTAG	3 cut(s)	78, 305, 372
SstI	GAGCTC	1 cut(s)	27
StyD4I	CCNGG	2 cut(s)	180, 262
StyI	CCWWGG	1 cut(s)	77
TaaI	ACNGT	3 cut(s)	216, 332, 538
TaiI	ACGT	2 cut(s)	319, 646
TaqI	TCGA	4 cut(s)	150, 224, 277, 339
TaqII	GACCGA	1 cut(s)	102
TasI	AATT	4 cut(s)	146, 418, 449, 546
TatI	WGTACW	1 cut(s)	622
TauI	GCSGC	1 cut(s)	311
TfiI	GAWTC	4 cut(s)	221, 226, 410, 458
Tru1I	TTAA	2 cut(s)	393, 417
Tru9I	TTAA	2 cut(s)	393, 417
TscAI	CASTG	2 cut(s)	442, 541
TseI	GCWGC	3 cut(s)	50, 163, 464
TspDTI	ATGAA	3 cut(s)	249, 510, 534
TspRI	CASTG	2 cut(s)	442, 541
Van91I	CCANNNNNTGG	1 cut(s)	320
VpaK11BI	GGWCC	2 cut(s)	62, 266
XmaJI	CCTAGG	1 cut(s)	77
XspI	CTAG	3 cut(s)	78, 305, 372
ZrmI	AGTACT	1 cut(s)	624

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.