Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0004134

Physical Location & Seq

Genomic Coordinates Forward (+)

57069117 .. 57070978

Gene Structure 1862 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000019817

Sequence Viewer

CDS Protein Promoter (2k)

Length: 690 bp

ATGTTTGGTATTTCGTACGGCGAGCTCTTCATCTTGATCGGAGCCACCGCTGCTTTAGTCGGACCAAAAGATTTGCCTAGGATTGCAAGAATGGCGGGGCGGTTAGCAGGTCGGTCAATCGGGTATGTCCAGTTAGCTCGAGGCCAATTCGACAATGTAATGCAGCAATCTCAAGCTCGCCAGGTTCAAAAGGAACTTCAAGATGCGCTTGCACAGTTGGATTCGATTCGTTATGAAGTACGAAGTCTGTCGCTTATAAACCCTGGTCCCATGACTCGAAAGCTGATGGAAAATGCTGGGGAACTTGCCTCTCCACATAATGGGGCCAACAGTTCAATTGAGAATCCTAAGAAGGAAGTGAAGTTGACGACTAGTGTGATAAAGGATAATATTAACTTCAGAACCTCAGAATCACTTAATTTGCATACACAAGCCACTGCATATGCTAAATTGGCTGAATCTGCTGCTGTGAACACTAGCTTCTTGAAAAGTAGTGAAGAGAAAGAGAGACTCATTGATGAAAATGGCCTTTTCACTGTTCTTTCAATTTCAGCTGAAAGTACCGGAATGGTACCAAAACGCAAGGAAAACATTGAAGGATCAGACATTGTGTTGGAAGCAGTGCTTGAAGCAGAGGTAGCACGTAACGCCAAAGATTTCTTCTCACAGGCTGAAAATCAAATACAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

230

Amino Acids

25.06

Weight (kDa)

5.84

Isoelectric Point (pI)

34.41

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004134)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G43680 AT5G43680
fragaria_vesca	FvH4_4g02310
malus_domestica	MD04G1026200.v1.1
prunus_persica	Prupe.1G027700_v2.0.a1 Prupe.1G027700_v2.0.a1 Prupe.1G027700_v2.0.a1 Prupe.1G027700_v2.0.a1 Prupe.1G175900_v2.0.a1 Prupe.1G175900_v2.0.a1 Prupe.1G175900_v2.0.a1 Prupe.1G175900_v2.0.a1 Prupe.1G175900_v2.0.a1 Prupe.2G050700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0389631
rosa_laevigata	RLG00000009965 RLG00000019817
rosa_multiflora	Rmu_sc0007419.1_g000005 Rmu_sc0034173.1_g000001
rosa_roxburghii	Rroxscaffold_5G00335620
rosa_rugosa	Rorug02G0358300 Rorug03G0324300 Rorug03G0324400 Rorug03G0324500 Rorug03G0324600
rosa_samantha	Rh2AG407700 Rh2CG393700 Rh2DG427400 Rh4AG029100 Rh4BG022300 Rh4CG031100 Rh4DG022800
rosa_wichuraiana	Rw4G002170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	257
Acc36I	ACCTGC	1 cut(s)	98
Acc65I	GGTACC	1 cut(s)	571
AccB1I	GGYRCC	1 cut(s)	571
AccB7I	CCANNNNNTGG	1 cut(s)	320
AciI	CCGC	3 cut(s)	48, 95, 100
AclWI	GGATC	1 cut(s)	607
AcuI	CTGAAG	1 cut(s)	382
AfaI	GTAC	4 cut(s)	17, 240, 562, 573
AfiI	CCNNNNNNNGG	1 cut(s)	320
AgsI	TTSAA	7 cut(s)	188, 200, 336, 487, 546, 596, 629
AhlI	ACTAGT	1 cut(s)	371
AjnI	CCWGG	2 cut(s)	180, 262
AjuI	GAANNNNNNNTTGG	2 cut(s)	644, 676
AluBI	AGCT	6 cut(s)	25, 137, 176, 283, 480, 554
AluI	AGCT	6 cut(s)	25, 137, 176, 283, 480, 554
Alw21I	GWGCWC	1 cut(s)	27
Alw26I	GTCTC	1 cut(s)	502
AlwI	GGATC	1 cut(s)	607
Ama87I	CYCGRG	1 cut(s)	138
AoxI	GGCC	3 cut(s)	142, 324, 526
ApeKI	GCWGC	3 cut(s)	50, 163, 464
Asp718I	GGTACC	1 cut(s)	571
AspA2I	CCTAGG	1 cut(s)	77
AspLEI	GCGC	1 cut(s)	208
AspS9I	GGNCC	3 cut(s)	62, 266, 324
AvaI	CYCGRG	1 cut(s)	138
AvaII	GGWCC	2 cut(s)	62, 266
AvrII	CCTAGG	1 cut(s)	77
BanI	GGYRCC	1 cut(s)	571
BanII	GRGCYC	1 cut(s)	27
Bbv12I	GWGCWC	1 cut(s)	27
BbvI	GCAGC	3 cut(s)	37, 175, 451
BccI	CCATC	1 cut(s)	280
BceAI	ACGGC	1 cut(s)	34
BciT130I	CCWGG	2 cut(s)	182, 264
BcoDI	GTCTC	1 cut(s)	502
BcuI	ACTAGT	1 cut(s)	371
BfaI	CTAG	3 cut(s)	78, 372, 477
BfuAI	ACCTGC	1 cut(s)	98
BisI	GCNGC	3 cut(s)	51, 164, 465
BlnI	CCTAGG	1 cut(s)	77
BlsI	GCNGC	3 cut(s)	52, 165, 466
Bme1390I	CCNGG	2 cut(s)	182, 264
Bme18I	GGWCC	2 cut(s)	62, 266
BmeT110I	CYCGRG	1 cut(s)	138
BmgT120I	GGNCC	3 cut(s)	62, 266, 324
BmiI	GGNNCC	4 cut(s)	43, 268, 325, 573
BmrFI	CCNGG	2 cut(s)	182, 264
BmsI	GCATC	1 cut(s)	193
BpuEI	CTTGAG	1 cut(s)	156
BsaAI	YACGTR	1 cut(s)	644
BsaJI	CCNNGG	2 cut(s)	77, 262
BsaWI	WCCGGW	1 cut(s)	563
Bsc4I	CCNNNNNNNGG	1 cut(s)	320
Bse1I	ACTGG	1 cut(s)	130
BseBI	CCWGG	2 cut(s)	182, 264
BseDI	CCNNGG	2 cut(s)	77, 262
BseLI	CCNNNNNNNGG	1 cut(s)	320
BseMII	CTCAG	1 cut(s)	420
BseNI	ACTGG	1 cut(s)	130
BseXI	GCAGC	3 cut(s)	37, 175, 451
BseYI	CCCAGC	1 cut(s)	296
BshFI	GGCC	3 cut(s)	144, 326, 528
BshNI	GGYRCC	1 cut(s)	571
BsiHKAI	GWGCWC	1 cut(s)	27
BsiHKCI	CYCGRG	1 cut(s)	138
BsiSI	CCGG	1 cut(s)	564
BsiWI	CGTACG	1 cut(s)	15
BslFI	GGGAC	1 cut(s)	252
BslI	CCNNNNNNNGG	1 cut(s)	320
BsmAI	GTCTC	1 cut(s)	502
BsmFI	GGGAC	1 cut(s)	252
BsnI	GGCC	3 cut(s)	144, 326, 528
BsoBI	CYCGRG	1 cut(s)	138
Bsp1286I	GDGCHC	1 cut(s)	27
Bsp143I	GATC	2 cut(s)	36, 599
BspACI	CCGC	3 cut(s)	48, 95, 100
BspANI	GGCC	3 cut(s)	144, 326, 528
BspCNI	CTCAG	1 cut(s)	419
BspLI	GGNNCC	4 cut(s)	43, 268, 325, 573
BspMI	ACCTGC	1 cut(s)	98
BspPI	GGATC	1 cut(s)	607
BspQI	GCTCTTC	1 cut(s)	32
BspT107I	GGYRCC	1 cut(s)	571
BsrI	ACTGG	1 cut(s)	130
BssECI	CCNNGG	2 cut(s)	77, 262
BssMI	GATC	2 cut(s)	36, 599
BssT1I	CCWWGG	1 cut(s)	77
Bst2UI	CCWGG	2 cut(s)	182, 264
Bst4CI	ACNGT	3 cut(s)	216, 332, 538
Bst6I	CTCTTC	2 cut(s)	32, 492
BstBAI	YACGTR	1 cut(s)	644
BstC8I	GCNNGC	3 cut(s)	23, 178, 210
BstDEI	CTNAG	2 cut(s)	348, 406
BstHHI	GCGC	1 cut(s)	208
BstKTI	GATC	2 cut(s)	39, 602
BstMAI	GTCTC	1 cut(s)	502
BstMBI	GATC	2 cut(s)	36, 599
BstMWI	GCNNNNNNNGC	6 cut(s)	50, 92, 452, 461, 638, 647
BstNI	CCWGG	2 cut(s)	182, 264
BstSCI	CCNGG	2 cut(s)	180, 262
BstV1I	GCAGC	3 cut(s)	37, 175, 451
BsuRI	GGCC	3 cut(s)	144, 326, 528
BtsI	GCAGTG	2 cut(s)	435, 627
BtsIMutI	CAGTG	3 cut(s)	435, 534, 627
BveI	ACCTGC	1 cut(s)	98
Cac8I	GCNNGC	3 cut(s)	23, 178, 210
CfoI	GCGC	1 cut(s)	208
Cfr13I	GGNCC	3 cut(s)	62, 266, 324
Csp6I	GTAC	4 cut(s)	16, 239, 561, 572
CviAII	CATG	1 cut(s)	271
CviQI	GTAC	4 cut(s)	16, 239, 561, 572
DdeI	CTNAG	2 cut(s)	348, 406
DpnI	GATC	2 cut(s)	38, 601
DpnII	GATC	2 cut(s)	36, 599
Eam1104I	CTCTTC	2 cut(s)	32, 492
EarI	CTCTTC	2 cut(s)	32, 492
Ecl136II	GAGCTC	1 cut(s)	25
Eco130I	CCWWGG	1 cut(s)	77
Eco24I	GRGCYC	1 cut(s)	27
Eco47I	GGWCC	2 cut(s)	62, 266
Eco53kI	GAGCTC	1 cut(s)	25
Eco57I	CTGAAG	1 cut(s)	382
Eco88I	CYCGRG	1 cut(s)	138
EcoICRI	GAGCTC	1 cut(s)	25
EcoRII	CCWGG	2 cut(s)	180, 262
EcoT14I	CCWWGG	1 cut(s)	77
EcoT38I	GRGCYC	1 cut(s)	27
ErhI	CCWWGG	1 cut(s)	77
FaeI	CATG	1 cut(s)	274
FaiI	YATR	8 cut(s)	126, 234, 257, 272, 318, 426, 442, 444
FalI	AAGNNNNNCTT	4 cut(s)	192, 224, 609, 641
FaqI	GGGAC	1 cut(s)	252
FatI	CATG	1 cut(s)	270
FauI	CCCGC	1 cut(s)	88
FauNDI	CATATG	1 cut(s)	442
Fnu4HI	GCNGC	3 cut(s)	51, 164, 465
FriOI	GRGCYC	1 cut(s)	27
Fsp4HI	GCNGC	3 cut(s)	51, 164, 465
FspBI	CTAG	3 cut(s)	78, 372, 477
GlaI	GCGC	1 cut(s)	207
GluI	GCNGC	3 cut(s)	51, 164, 465
GsaI	CCCAGC	1 cut(s)	300
HaeIII	GGCC	3 cut(s)	144, 326, 528
HapII	CCGG	1 cut(s)	564
HhaI	GCGC	1 cut(s)	208
Hin1II	CATG	1 cut(s)	274
Hin6I	GCGC	1 cut(s)	206
HinP1I	GCGC	1 cut(s)	206
HincII	GTYRAC	1 cut(s)	366
HindII	GTYRAC	1 cut(s)	366
HinfI	GANTC	7 cut(s)	221, 226, 274, 343, 410, 458, 510
HpaII	CCGG	1 cut(s)	564
Hpy166II	GTNNAC	2 cut(s)	366, 472
Hpy188I	TCNGA	5 cut(s)	41, 62, 401, 409, 604
Hpy188III	TCNNGA	3 cut(s)	34, 200, 484
Hpy8I	GTNNAC	2 cut(s)	366, 472
HpyAV	CCTTC	2 cut(s)	346, 590
HpyCH4III	ACNGT	3 cut(s)	216, 332, 538
HpyCH4IV	ACGT	1 cut(s)	643
HpyCH4V	TGCA	5 cut(s)	86, 163, 212, 424, 440
HpyF10VI	GCNNNNNNNGC	6 cut(s)	50, 92, 452, 461, 638, 647
HpyF3I	CTNAG	2 cut(s)	348, 406
HpySE526I	ACGT	1 cut(s)	643
Hsp92II	CATG	1 cut(s)	274
HspAI	GCGC	1 cut(s)	206
KpnI	GGTACC	1 cut(s)	575
Kzo9I	GATC	2 cut(s)	36, 599
LguI	GCTCTTC	1 cut(s)	32
LmnI	GCTCC	1 cut(s)	41
LpnPI	CCDG	9 cut(s)	93, 143, 167, 194, 249, 276, 282, 577, 653
Lsp1109I	GCAGC	3 cut(s)	37, 175, 451
LweI	GCATC	1 cut(s)	193
MaeI	CTAG	3 cut(s)	78, 372, 477
MaeII	ACGT	1 cut(s)	643
MaeIII	GTNAC	1 cut(s)	644
MalI	GATC	2 cut(s)	38, 601
MboI	GATC	2 cut(s)	36, 599
MboII	GAAGA	3 cut(s)	19, 509, 652
MfeI	CAATTG	1 cut(s)	336
MhlI	GDGCHC	1 cut(s)	27
MluCI	AATT	5 cut(s)	146, 336, 418, 449, 546
MlyI	GAGTC	2 cut(s)	268, 504
MmeI	TCCRAC	3 cut(s)	40, 198, 594
MnlI	CCTC	4 cut(s)	134, 319, 415, 628
MseI	TTAA	2 cut(s)	393, 417
MspA1I	CMGCKG	2 cut(s)	50, 554
MspI	CCGG	1 cut(s)	564
MspR9I	CCNGG	2 cut(s)	182, 264
MunI	CAATTG	1 cut(s)	336
MvaI	CCWGG	2 cut(s)	182, 264
MwoI	GCNNNNNNNGC	6 cut(s)	50, 92, 452, 461, 638, 647
NdeI	CATATG	1 cut(s)	442
NdeII	GATC	2 cut(s)	36, 599
NlaIII	CATG	1 cut(s)	274
NlaIV	GGNNCC	4 cut(s)	43, 268, 325, 573
PaeR7I	CTCGAG	1 cut(s)	138
PciSI	GCTCTTC	1 cut(s)	32
PfeI	GAWTC	5 cut(s)	221, 226, 343, 410, 458
Pfl23II	CGTACG	1 cut(s)	15
PflMI	CCANNNNNTGG	1 cut(s)	320
PkrI	GCNGC	3 cut(s)	52, 165, 466
PleI	GAGTC	2 cut(s)	268, 504
PpsI	GAGTC	2 cut(s)	268, 504
Ppu21I	YACGTR	1 cut(s)	644
PsiI	TTATAA	1 cut(s)	257
Psp124BI	GAGCTC	1 cut(s)	27
Psp6I	CCWGG	2 cut(s)	180, 262
PspFI	CCCAGC	1 cut(s)	296
PspGI	CCWGG	2 cut(s)	180, 262
PspLI	CGTACG	1 cut(s)	15
PspN4I	GGNNCC	4 cut(s)	43, 268, 325, 573
PspPI	GGNCC	3 cut(s)	62, 266, 324
PspXI	VCTCGAGB	1 cut(s)	138
PvuII	CAGCTG	1 cut(s)	554
RsaI	GTAC	4 cut(s)	17, 240, 562, 573
RsaNI	GTAC	4 cut(s)	16, 239, 561, 572
SacI	GAGCTC	1 cut(s)	27
SapI	GCTCTTC	1 cut(s)	32
SaqAI	TTAA	2 cut(s)	393, 417
SatI	GCNGC	3 cut(s)	51, 164, 465
Sau3AI	GATC	2 cut(s)	36, 599
Sau96I	GGNCC	3 cut(s)	62, 266, 324
SchI	GAGTC	2 cut(s)	268, 504
ScrFI	CCNGG	2 cut(s)	182, 264
SduI	GDGCHC	1 cut(s)	27
SfaNI	GCATC	1 cut(s)	193
Sfr274I	CTCGAG	1 cut(s)	138
SinI	GGWCC	2 cut(s)	62, 266
SlaI	CTCGAG	1 cut(s)	138
SmlI	CTYRAG	2 cut(s)	138, 171
SmoI	CTYRAG	2 cut(s)	138, 171
SpeI	ACTAGT	1 cut(s)	371
Sse9I	AATT	5 cut(s)	146, 336, 418, 449, 546
SsiI	CCGC	3 cut(s)	48, 95, 100
SspI	AATATT	1 cut(s)	391
SspMI	CTAG	3 cut(s)	78, 372, 477
SstI	GAGCTC	1 cut(s)	27
StyD4I	CCNGG	2 cut(s)	180, 262
StyI	CCWWGG	1 cut(s)	77
TaaI	ACNGT	3 cut(s)	216, 332, 538
TaiI	ACGT	1 cut(s)	646
TaqI	TCGA	4 cut(s)	139, 150, 224, 277
TaqII	GACCGA	1 cut(s)	102
TasI	AATT	5 cut(s)	146, 336, 418, 449, 546
TfiI	GAWTC	5 cut(s)	221, 226, 343, 410, 458
Tru1I	TTAA	2 cut(s)	393, 417
Tru9I	TTAA	2 cut(s)	393, 417
TscAI	CASTG	3 cut(s)	442, 541, 627
TseI	GCWGC	3 cut(s)	50, 163, 464
TspDTI	ATGAA	3 cut(s)	19, 249, 534
TspRI	CASTG	3 cut(s)	442, 541, 627
Van91I	CCANNNNNTGG	1 cut(s)	320
VpaK11BI	GGWCC	2 cut(s)	62, 266
XhoI	CTCGAG	1 cut(s)	138
XmaJI	CCTAGG	1 cut(s)	77
XspI	CTAG	3 cut(s)	78, 372, 477

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.