Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0004134

Physical Location & Seq

Genomic Coordinates Forward (+)

53651961 .. 53653408

Gene Structure 1448 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG393700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 531 bp

ATGCAGCAATCTCAAGCTCGCCAGGTTCAAAAGGAACTTCAAGATGCGCTTGCACAGTTGGATTCGATTCGTTATGAAGTACGAAGTCTGTCGCTTATAAACTCGGGTCCCATGACTCGAAAGCTGATGGAAAATGCTGTGGAACTTGCCTCTCCACATAATGGGGCCAACAGTTCAATTGAGAATCCTAAGAAGGAAGTGAAGTTGACGACTAGTGTGATAAAGGATAATATTAACTTCAGAACCTCAGAATCACTTAATTTGCATACACAAGCCACTGCATATGCTAAATTGGCTGAATCTGCTGCTGTGAACACTAGCTTCTTGAAAAGTAGTGAAGAGAAAGAGAGACTTATTGATGAAAATGGCCTTTTCACTGTTCTTCCAATTTCAGCTGAAAGCACCGGAATGGTACCAAAACGCAAGGAAAACGTTGAAGGATCAGACATTGTGTTGGAAGCAGTGCTTGAAGCAGAGGTAGCACGTAACGCCAAAGATTTCTTCTCACAGGCTGAAAATCAAATACAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

176

Amino Acids

19.45

Weight (kDa)

5.2

Isoelectric Point (pI)

36.54

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004134)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G43680 AT5G43680
fragaria_vesca	FvH4_4g02310
malus_domestica	MD04G1026200.v1.1
prunus_persica	Prupe.1G027700_v2.0.a1 Prupe.1G027700_v2.0.a1 Prupe.1G027700_v2.0.a1 Prupe.1G027700_v2.0.a1 Prupe.1G175900_v2.0.a1 Prupe.1G175900_v2.0.a1 Prupe.1G175900_v2.0.a1 Prupe.1G175900_v2.0.a1 Prupe.1G175900_v2.0.a1 Prupe.2G050700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0389631
rosa_laevigata	RLG00000009965 RLG00000019817
rosa_multiflora	Rmu_sc0007419.1_g000005 Rmu_sc0034173.1_g000001
rosa_roxburghii	Rroxscaffold_5G00335620
rosa_rugosa	Rorug02G0358300 Rorug03G0324300 Rorug03G0324400 Rorug03G0324500 Rorug03G0324600
rosa_samantha	Rh2AG407700 Rh2CG393700 Rh2DG427400 Rh4AG029100 Rh4BG022300 Rh4CG031100 Rh4DG022800
rosa_wichuraiana	Rw4G002170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	98
Acc65I	GGTACC	1 cut(s)	412
AccB1I	GGYRCC	1 cut(s)	412
AccB7I	CCANNNNNTGG	1 cut(s)	161
AclI	AACGTT	1 cut(s)	432
AclWI	GGATC	1 cut(s)	448
AcuI	CTGAAG	1 cut(s)	223
AfaI	GTAC	2 cut(s)	81, 414
AfiI	CCNNNNNNNGG	1 cut(s)	161
AgsI	TTSAA	6 cut(s)	29, 41, 177, 328, 437, 470
AhlI	ACTAGT	1 cut(s)	212
AjnI	CCWGG	1 cut(s)	21
AjuI	GAANNNNNNNTTGG	2 cut(s)	485, 517
AluBI	AGCT	4 cut(s)	17, 124, 321, 395
AluI	AGCT	4 cut(s)	17, 124, 321, 395
Alw26I	GTCTC	1 cut(s)	343
AlwI	GGATC	1 cut(s)	448
Ama87I	CYCGRG	1 cut(s)	103
AoxI	GGCC	2 cut(s)	165, 367
ApeKI	GCWGC	2 cut(s)	4, 305
Asp718I	GGTACC	1 cut(s)	412
AspLEI	GCGC	1 cut(s)	49
AspS9I	GGNCC	2 cut(s)	107, 165
AvaI	CYCGRG	1 cut(s)	103
AvaII	GGWCC	1 cut(s)	107
BanI	GGYRCC	1 cut(s)	412
BbvI	GCAGC	2 cut(s)	16, 292
BccI	CCATC	1 cut(s)	121
BciT130I	CCWGG	1 cut(s)	23
BcoDI	GTCTC	1 cut(s)	343
BcuI	ACTAGT	1 cut(s)	212
BfaI	CTAG	2 cut(s)	213, 318
BisI	GCNGC	2 cut(s)	5, 306
BlsI	GCNGC	2 cut(s)	6, 307
Bme1390I	CCNGG	1 cut(s)	23
Bme18I	GGWCC	1 cut(s)	107
BmeT110I	CYCGRG	1 cut(s)	103
BmgT120I	GGNCC	2 cut(s)	107, 165
BmiI	GGNNCC	4 cut(s)	108, 109, 166, 414
BmrFI	CCNGG	1 cut(s)	23
BmsI	GCATC	1 cut(s)	34
BsaAI	YACGTR	1 cut(s)	485
BsaWI	WCCGGW	1 cut(s)	404
Bsc4I	CCNNNNNNNGG	1 cut(s)	161
BseBI	CCWGG	1 cut(s)	23
BseLI	CCNNNNNNNGG	1 cut(s)	161
BseMII	CTCAG	1 cut(s)	261
BseXI	GCAGC	2 cut(s)	16, 292
BshFI	GGCC	2 cut(s)	167, 369
BshNI	GGYRCC	1 cut(s)	412
BsiHKCI	CYCGRG	1 cut(s)	103
BsiSI	CCGG	1 cut(s)	405
BslFI	GGGAC	1 cut(s)	93
BslI	CCNNNNNNNGG	1 cut(s)	161
BsmAI	GTCTC	1 cut(s)	343
BsmFI	GGGAC	1 cut(s)	93
BsnI	GGCC	2 cut(s)	167, 369
BsoBI	CYCGRG	1 cut(s)	103
Bsp143I	GATC	1 cut(s)	440
BspANI	GGCC	2 cut(s)	167, 369
BspCNI	CTCAG	1 cut(s)	260
BspLI	GGNNCC	4 cut(s)	108, 109, 166, 414
BspPI	GGATC	1 cut(s)	448
BspT107I	GGYRCC	1 cut(s)	412
BssMI	GATC	1 cut(s)	440
Bst2UI	CCWGG	1 cut(s)	23
Bst4CI	ACNGT	3 cut(s)	57, 173, 379
Bst6I	CTCTTC	1 cut(s)	333
BstBAI	YACGTR	1 cut(s)	485
BstC8I	GCNNGC	2 cut(s)	19, 51
BstDEI	CTNAG	2 cut(s)	189, 247
BstHHI	GCGC	1 cut(s)	49
BstKTI	GATC	1 cut(s)	443
BstMAI	GTCTC	1 cut(s)	343
BstMBI	GATC	1 cut(s)	440
BstMWI	GCNNNNNNNGC	4 cut(s)	293, 302, 479, 488
BstNI	CCWGG	1 cut(s)	23
BstSCI	CCNGG	1 cut(s)	21
BstV1I	GCAGC	2 cut(s)	16, 292
BsuRI	GGCC	2 cut(s)	167, 369
BtsI	GCAGTG	2 cut(s)	276, 468
BtsIMutI	CAGTG	3 cut(s)	276, 375, 468
Cac8I	GCNNGC	2 cut(s)	19, 51
CfoI	GCGC	1 cut(s)	49
Cfr13I	GGNCC	2 cut(s)	107, 165
Csp6I	GTAC	2 cut(s)	80, 413
CviAII	CATG	1 cut(s)	112
CviJI	RGCY	9 cut(s)	17, 124, 167, 275, 296, 321, 369, 395, 512
CviKI_1	RGCY	9 cut(s)	17, 124, 167, 275, 296, 321, 369, 395, 512
CviQI	GTAC	2 cut(s)	80, 413
DdeI	CTNAG	2 cut(s)	189, 247
DpnI	GATC	1 cut(s)	442
DpnII	GATC	1 cut(s)	440
Eam1104I	CTCTTC	1 cut(s)	333
EarI	CTCTTC	1 cut(s)	333
Eco47I	GGWCC	1 cut(s)	107
Eco57I	CTGAAG	1 cut(s)	223
Eco88I	CYCGRG	1 cut(s)	103
EcoO109I	RGGNCCY	1 cut(s)	107
EcoRII	CCWGG	1 cut(s)	21
FaeI	CATG	1 cut(s)	115
FaiI	YATR	7 cut(s)	75, 98, 113, 159, 267, 283, 285
FalI	AAGNNNNNCTT	6 cut(s)	33, 65, 336, 368, 450, 482
FaqI	GGGAC	1 cut(s)	93
FatI	CATG	1 cut(s)	111
FauNDI	CATATG	1 cut(s)	283
Fnu4HI	GCNGC	2 cut(s)	5, 306
Fsp4HI	GCNGC	2 cut(s)	5, 306
FspBI	CTAG	2 cut(s)	213, 318
GlaI	GCGC	1 cut(s)	48
GluI	GCNGC	2 cut(s)	5, 306
HaeIII	GGCC	2 cut(s)	167, 369
HapII	CCGG	1 cut(s)	405
HhaI	GCGC	1 cut(s)	49
Hin1II	CATG	1 cut(s)	115
Hin6I	GCGC	1 cut(s)	47
HinP1I	GCGC	1 cut(s)	47
HincII	GTYRAC	1 cut(s)	207
HindII	GTYRAC	1 cut(s)	207
HinfI	GANTC	6 cut(s)	62, 67, 115, 184, 251, 299
HpaII	CCGG	1 cut(s)	405
Hpy166II	GTNNAC	2 cut(s)	207, 313
Hpy188I	TCNGA	3 cut(s)	242, 250, 445
Hpy188III	TCNNGA	2 cut(s)	41, 325
Hpy8I	GTNNAC	2 cut(s)	207, 313
HpyAV	CCTTC	2 cut(s)	187, 431
HpyCH4III	ACNGT	3 cut(s)	57, 173, 379
HpyCH4IV	ACGT	2 cut(s)	432, 484
HpyCH4V	TGCA	4 cut(s)	4, 53, 265, 281
HpyF10VI	GCNNNNNNNGC	4 cut(s)	293, 302, 479, 488
HpyF3I	CTNAG	2 cut(s)	189, 247
HpySE526I	ACGT	2 cut(s)	432, 484
Hsp92II	CATG	1 cut(s)	115
HspAI	GCGC	1 cut(s)	47
KflI	GGGWCCC	1 cut(s)	107
KpnI	GGTACC	1 cut(s)	416
Kzo9I	GATC	1 cut(s)	440
LpnPI	CCDG	4 cut(s)	8, 35, 418, 494
Lsp1109I	GCAGC	2 cut(s)	16, 292
LweI	GCATC	1 cut(s)	34
MaeI	CTAG	2 cut(s)	213, 318
MaeII	ACGT	2 cut(s)	432, 484
MaeIII	GTNAC	1 cut(s)	485
MalI	GATC	1 cut(s)	442
MboI	GATC	1 cut(s)	440
MboII	GAAGA	3 cut(s)	350, 374, 493
MfeI	CAATTG	1 cut(s)	177
MluCI	AATT	4 cut(s)	177, 259, 290, 387
MlyI	GAGTC	1 cut(s)	109
MmeI	TCCRAC	2 cut(s)	39, 435
MnlI	CCTC	3 cut(s)	160, 256, 469
MseI	TTAA	2 cut(s)	234, 258
MslI	CAYNNNNRTG	1 cut(s)	407
MspA1I	CMGCKG	1 cut(s)	395
MspI	CCGG	1 cut(s)	405
MspR9I	CCNGG	1 cut(s)	23
MunI	CAATTG	1 cut(s)	177
MvaI	CCWGG	1 cut(s)	23
MwoI	GCNNNNNNNGC	4 cut(s)	293, 302, 479, 488
NdeI	CATATG	1 cut(s)	283
NdeII	GATC	1 cut(s)	440
NlaIII	CATG	1 cut(s)	115
NlaIV	GGNNCC	4 cut(s)	108, 109, 166, 414
PfeI	GAWTC	5 cut(s)	62, 67, 184, 251, 299
PflMI	CCANNNNNTGG	1 cut(s)	161
PkrI	GCNGC	2 cut(s)	6, 307
PleI	GAGTC	1 cut(s)	109
PpsI	GAGTC	1 cut(s)	109
Ppu21I	YACGTR	1 cut(s)	485
PpuMI	RGGWCCY	1 cut(s)	107
PsiI	TTATAA	1 cut(s)	98
Psp1406I	AACGTT	1 cut(s)	432
Psp5II	RGGWCCY	1 cut(s)	107
Psp6I	CCWGG	1 cut(s)	21
PspGI	CCWGG	1 cut(s)	21
PspN4I	GGNNCC	4 cut(s)	108, 109, 166, 414
PspPI	GGNCC	2 cut(s)	107, 165
PspPPI	RGGWCCY	1 cut(s)	107
PvuII	CAGCTG	1 cut(s)	395
RsaI	GTAC	2 cut(s)	81, 414
RsaNI	GTAC	2 cut(s)	80, 413
RseI	CAYNNNNRTG	1 cut(s)	407
SaqAI	TTAA	2 cut(s)	234, 258
SatI	GCNGC	2 cut(s)	5, 306
Sau3AI	GATC	1 cut(s)	440
Sau96I	GGNCC	2 cut(s)	107, 165
SchI	GAGTC	1 cut(s)	109
ScrFI	CCNGG	1 cut(s)	23
SetI	ASST	9 cut(s)	19, 27, 126, 248, 323, 397, 435, 480, 487
SfaNI	GCATC	1 cut(s)	34
SinI	GGWCC	1 cut(s)	107
SmiMI	CAYNNNNRTG	1 cut(s)	407
SmlI	CTYRAG	1 cut(s)	12
SmoI	CTYRAG	1 cut(s)	12
SpeI	ACTAGT	1 cut(s)	212
Sse9I	AATT	4 cut(s)	177, 259, 290, 387
SspI	AATATT	1 cut(s)	232
SspMI	CTAG	2 cut(s)	213, 318
StyD4I	CCNGG	1 cut(s)	21
TaaI	ACNGT	3 cut(s)	57, 173, 379
TaiI	ACGT	2 cut(s)	435, 487
TaqI	TCGA	2 cut(s)	65, 118
TasI	AATT	4 cut(s)	177, 259, 290, 387
TfiI	GAWTC	5 cut(s)	62, 67, 184, 251, 299
Tru1I	TTAA	2 cut(s)	234, 258
Tru9I	TTAA	2 cut(s)	234, 258
TscAI	CASTG	3 cut(s)	283, 382, 468
TseI	GCWGC	2 cut(s)	4, 305
TspDTI	ATGAA	2 cut(s)	90, 375
TspRI	CASTG	3 cut(s)	283, 382, 468
Van91I	CCANNNNNTGG	1 cut(s)	161
VpaK11BI	GGWCC	1 cut(s)	107
XspI	CTAG	2 cut(s)	213, 318

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.