Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0004134

Physical Location & Seq

Genomic Coordinates Reverse (-)

1939756 .. 1941980

Gene Structure 2225 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G027700.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 672 bp

ATGTTGGGTATTTCGTACGGAGAGCTCTTCCTCTTGATCGGAGCCACAGCCGCTCTTGTCGGACCAAAGGATTTGCCTAGAATTGCTAGAACAGCAGGGCGGCTAGCGGGTCGGGCAATCGGTTATGTTCAGTTAGCTCGTGGCCAATTCGAAAATGTTATGCAGCAATCTCAAGCTCGCCAGGTTCATAAAGAACTTCAAGATGCACTGGCACAATTAGAGTCGATTCGATATGAAGTTCGAAGCATATCACTTATGAATCCTGGTCCTCTGACTAGGAAGCTGATGGACAATCCTCAAGACCTGGCTCCTACAGGGGCCAATGGGTCACTTGAGAAGCCCAAGGAAGAGCTGATGTCAACAAGTACTGTGCTGAAGGATAGAACCCCCGAGTCAGTTAATTTGCATAGCCAAGCAACTGCTTATGAAAGATTGGCTGAATCTGATGCCGTGAAGTCTGACTCTTTGAAGAGAAGTGCAGAGAAAGAGAACCTTAGTGATGAAGGTGGTCTTTTTGCTGTTCTCCCAGTTTCAGCTGAAAGCACTGGGATGCTACCAAATCGCAAGGAGAATGTTGAAGGATCGGACATTGTGTTGGAAGCGATACTTGAAGCAGAGGTAGCACGCAATGCCAAAGATTTCTTTTCACAGCCTGCAAATCAAATACAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

224

Amino Acids

24.23

Weight (kDa)

5.25

Isoelectric Point (pI)

33.24

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004134)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G43680 AT5G43680
fragaria_vesca	FvH4_4g02310
malus_domestica	MD04G1026200.v1.1
prunus_persica	Prupe.1G027700_v2.0.a1 Prupe.1G027700_v2.0.a1 Prupe.1G027700_v2.0.a1 Prupe.1G027700_v2.0.a1 Prupe.1G175900_v2.0.a1 Prupe.1G175900_v2.0.a1 Prupe.1G175900_v2.0.a1 Prupe.1G175900_v2.0.a1 Prupe.1G175900_v2.0.a1 Prupe.2G050700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0389631
rosa_laevigata	RLG00000009965 RLG00000019817
rosa_multiflora	Rmu_sc0007419.1_g000005 Rmu_sc0034173.1_g000001
rosa_roxburghii	Rroxscaffold_5G00335620
rosa_rugosa	Rorug02G0358300 Rorug03G0324300 Rorug03G0324400 Rorug03G0324500 Rorug03G0324600
rosa_samantha	Rh2AG407700 Rh2CG393700 Rh2DG427400 Rh4AG029100 Rh4BG022300 Rh4CG031100 Rh4DG022800
rosa_wichuraiana	Rw4G002170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	53
AciI	CCGC	3 cut(s)	51, 100, 107
AclWI	GGATC	1 cut(s)	589
AcoI	YGGCCR	1 cut(s)	142
AcuI	CTGAAG	1 cut(s)	395
AfaI	GTAC	2 cut(s)	17, 367
AgsI	TTSAA	4 cut(s)	200, 469, 578, 611
AjnI	CCWGG	3 cut(s)	180, 262, 303
AluBI	AGCT	6 cut(s)	25, 137, 176, 283, 352, 536
AluI	AGCT	6 cut(s)	25, 137, 176, 283, 352, 536
Alw21I	GWGCWC	1 cut(s)	27
AlwI	GGATC	1 cut(s)	589
Ama87I	CYCGRG	1 cut(s)	389
AoxI	GGCC	2 cut(s)	142, 318
ApeKI	GCWGC	1 cut(s)	163
AspS9I	GGNCC	3 cut(s)	62, 266, 318
AsuII	TTCGAA	2 cut(s)	150, 241
AsuNHI	GCTAGC	1 cut(s)	103
AvaI	CYCGRG	1 cut(s)	389
AvaII	GGWCC	2 cut(s)	62, 266
BalI	TGGCCA	1 cut(s)	144
BanII	GRGCYC	1 cut(s)	27
BauI	CACGAG	1 cut(s)	138
Bbv12I	GWGCWC	1 cut(s)	27
BbvI	GCAGC	1 cut(s)	175
BccI	CCATC	1 cut(s)	280
BceAI	ACGGC	1 cut(s)	434
BciT130I	CCWGG	3 cut(s)	182, 264, 305
BfaI	CTAG	4 cut(s)	78, 87, 104, 276
BfmI	CTRYAG	1 cut(s)	312
BisI	GCNGC	3 cut(s)	51, 101, 164
BlsI	GCNGC	3 cut(s)	52, 102, 165
BmcAI	AGTACT	1 cut(s)	367
Bme1390I	CCNGG	3 cut(s)	182, 264, 305
Bme18I	GGWCC	2 cut(s)	62, 266
BmeT110I	CYCGRG	1 cut(s)	389
BmgT120I	GGNCC	3 cut(s)	62, 266, 318
BmiI	GGNNCC	3 cut(s)	43, 309, 319
BmrFI	CCNGG	3 cut(s)	182, 264, 305
BmrI	ACTGGG	2 cut(s)	521, 555
BmsI	GCATC	3 cut(s)	193, 436, 540
BmtI	GCTAGC	1 cut(s)	107
BmuI	ACTGGG	2 cut(s)	521, 555
Bpu14I	TTCGAA	2 cut(s)	150, 241
BpuEI	CTTGAG	3 cut(s)	156, 282, 353
BsaJI	CCNNGG	1 cut(s)	342
Bse1I	ACTGG	3 cut(s)	213, 527, 550
Bse3DI	GCAATG	1 cut(s)	634
BseBI	CCWGG	3 cut(s)	182, 264, 305
BseDI	CCNNGG	1 cut(s)	342
BseGI	GGATG	1 cut(s)	555
BseMI	GCAATG	1 cut(s)	634
BseNI	ACTGG	3 cut(s)	213, 527, 550
BseXI	GCAGC	1 cut(s)	175
BsgI	GTGCAG	1 cut(s)	498
BshFI	GGCC	2 cut(s)	144, 320
BsiHKAI	GWGCWC	1 cut(s)	27
BsiHKCI	CYCGRG	1 cut(s)	389
BsiWI	CGTACG	1 cut(s)	15
BsnI	GGCC	2 cut(s)	144, 320
BsoBI	CYCGRG	1 cut(s)	389
Bsp119I	TTCGAA	2 cut(s)	150, 241
Bsp1286I	GDGCHC	1 cut(s)	27
Bsp143I	GATC	2 cut(s)	36, 581
BspACI	CCGC	3 cut(s)	51, 100, 107
BspANI	GGCC	2 cut(s)	144, 320
BspLI	GGNNCC	3 cut(s)	43, 309, 319
BspOI	GCTAGC	1 cut(s)	107
BspPI	GGATC	1 cut(s)	589
BspQI	GCTCTTC	2 cut(s)	32, 342
BspT104I	TTCGAA	2 cut(s)	150, 241
BsrBI	CCGCTC	1 cut(s)	53
BsrDI	GCAATG	1 cut(s)	634
BsrI	ACTGG	3 cut(s)	213, 527, 550
BssECI	CCNNGG	1 cut(s)	342
BssMI	GATC	2 cut(s)	36, 581
BssSI	CACGAG	1 cut(s)	138
BssT1I	CCWWGG	1 cut(s)	342
Bst2BI	CACGAG	1 cut(s)	138
Bst2UI	CCWGG	3 cut(s)	182, 264, 305
Bst4CI	ACNGT	2 cut(s)	370, 669
Bst6I	CTCTTC	3 cut(s)	32, 342, 464
BstAPI	GCANNNNNTGC	1 cut(s)	629
BstBI	TTCGAA	2 cut(s)	150, 241
BstC8I	GCNNGC	4 cut(s)	105, 178, 625, 654
BstDEI	CTNAG	1 cut(s)	494
BstF5I	GGATG	1 cut(s)	555
BstKTI	GATC	2 cut(s)	39, 584
BstMBI	GATC	2 cut(s)	36, 581
BstMWI	GCNNNNNNNGC	5 cut(s)	50, 92, 113, 620, 629
BstNI	CCWGG	3 cut(s)	182, 264, 305
BstSCI	CCNGG	3 cut(s)	180, 262, 303
BstSFI	CTRYAG	1 cut(s)	312
BstV1I	GCAGC	1 cut(s)	175
BsuRI	GGCC	2 cut(s)	144, 320
BtsCI	GGATG	1 cut(s)	555
BtsIMutI	CAGTG	2 cut(s)	206, 543
Cac8I	GCNNGC	4 cut(s)	105, 178, 625, 654
Cfr13I	GGNCC	3 cut(s)	62, 266, 318
Csp6I	GTAC	2 cut(s)	16, 366
CviQI	GTAC	2 cut(s)	16, 366
DdeI	CTNAG	1 cut(s)	494
DpnI	GATC	2 cut(s)	38, 583
DpnII	GATC	2 cut(s)	36, 581
EaeI	YGGCCR	1 cut(s)	142
Eam1104I	CTCTTC	3 cut(s)	32, 342, 464
EarI	CTCTTC	3 cut(s)	32, 342, 464
Ecl136II	GAGCTC	1 cut(s)	25
Eco130I	CCWWGG	1 cut(s)	342
Eco24I	GRGCYC	1 cut(s)	27
Eco47I	GGWCC	2 cut(s)	62, 266
Eco53kI	GAGCTC	1 cut(s)	25
Eco57I	CTGAAG	1 cut(s)	395
Eco88I	CYCGRG	1 cut(s)	389
EcoICRI	GAGCTC	1 cut(s)	25
EcoRII	CCWGG	3 cut(s)	180, 262, 303
EcoT14I	CCWWGG	1 cut(s)	342
EcoT38I	GRGCYC	1 cut(s)	27
ErhI	CCWWGG	1 cut(s)	342
FaiI	YATR	8 cut(s)	126, 161, 189, 234, 248, 257, 408, 426
FalI	AAGNNNNNCTT	6 cut(s)	477, 509, 495, 527, 591, 623
FauI	CCCGC	1 cut(s)	100
Fnu4HI	GCNGC	3 cut(s)	51, 101, 164
FokI	GGATG	1 cut(s)	562
FriOI	GRGCYC	1 cut(s)	27
Fsp4HI	GCNGC	3 cut(s)	51, 101, 164
FspBI	CTAG	4 cut(s)	78, 87, 104, 276
GluI	GCNGC	3 cut(s)	51, 101, 164
HaeIII	GGCC	2 cut(s)	144, 320
HincII	GTYRAC	1 cut(s)	360
HindII	GTYRAC	1 cut(s)	360
HinfI	GANTC	6 cut(s)	221, 226, 259, 392, 440, 461
Hpy166II	GTNNAC	1 cut(s)	360
Hpy188I	TCNGA	6 cut(s)	41, 62, 273, 445, 460, 586
Hpy188III	TCNNGA	3 cut(s)	34, 200, 299
Hpy8I	GTNNAC	1 cut(s)	360
HpyAV	CCTTC	3 cut(s)	370, 497, 572
HpyCH4III	ACNGT	2 cut(s)	370, 669
HpyCH4V	TGCA	5 cut(s)	163, 206, 406, 479, 656
HpyF10VI	GCNNNNNNNGC	5 cut(s)	50, 92, 113, 620, 629
HpyF3I	CTNAG	1 cut(s)	494
Kzo9I	GATC	2 cut(s)	36, 581
LguI	GCTCTTC	2 cut(s)	32, 342
LmnI	GCTCC	2 cut(s)	41, 313
Lsp1109I	GCAGC	1 cut(s)	175
LweI	GCATC	3 cut(s)	193, 436, 540
MaeI	CTAG	4 cut(s)	78, 87, 104, 276
MaeIII	GTNAC	1 cut(s)	327
MalI	GATC	2 cut(s)	38, 583
MbiI	CCGCTC	1 cut(s)	53
MboI	GATC	2 cut(s)	36, 581
MboII	GAAGA	3 cut(s)	19, 359, 481
MhlI	GDGCHC	1 cut(s)	27
MlsI	TGGCCA	1 cut(s)	144
MluCI	AATT	4 cut(s)	81, 146, 215, 400
MluNI	TGGCCA	1 cut(s)	144
MlyI	GAGTC	3 cut(s)	230, 401, 455
MmeI	TCCRAC	2 cut(s)	40, 576
MnlI	CCTC	4 cut(s)	41, 279, 306, 610
Mox20I	TGGCCA	1 cut(s)	144
MscI	TGGCCA	1 cut(s)	144
MseI	TTAA	1 cut(s)	399
MslI	CAYNNNNRTG	1 cut(s)	548
Msp20I	TGGCCA	1 cut(s)	144
MspA1I	CMGCKG	1 cut(s)	536
MspR9I	CCNGG	3 cut(s)	182, 264, 305
MvaI	CCWGG	3 cut(s)	182, 264, 305
MwoI	GCNNNNNNNGC	5 cut(s)	50, 92, 113, 620, 629
NdeII	GATC	2 cut(s)	36, 581
NheI	GCTAGC	1 cut(s)	103
NlaIV	GGNNCC	3 cut(s)	43, 309, 319
NmuCI	GTSAC	1 cut(s)	327
NspV	TTCGAA	2 cut(s)	150, 241
PciSI	GCTCTTC	2 cut(s)	32, 342
PfeI	GAWTC	3 cut(s)	226, 259, 440
Pfl23II	CGTACG	1 cut(s)	15
PkrI	GCNGC	3 cut(s)	52, 102, 165
PleI	GAGTC	3 cut(s)	229, 400, 455
PpsI	GAGTC	3 cut(s)	229, 400, 455
Psp124BI	GAGCTC	1 cut(s)	27
Psp6I	CCWGG	3 cut(s)	180, 262, 303
PspGI	CCWGG	3 cut(s)	180, 262, 303
PspLI	CGTACG	1 cut(s)	15
PspN4I	GGNNCC	3 cut(s)	43, 309, 319
PspPI	GGNCC	3 cut(s)	62, 266, 318
PvuII	CAGCTG	1 cut(s)	536
RsaI	GTAC	2 cut(s)	17, 367
RsaNI	GTAC	2 cut(s)	16, 366
RseI	CAYNNNNRTG	1 cut(s)	548
SacI	GAGCTC	1 cut(s)	27
SapI	GCTCTTC	2 cut(s)	32, 342
SaqAI	TTAA	1 cut(s)	399
SatI	GCNGC	3 cut(s)	51, 101, 164
Sau3AI	GATC	2 cut(s)	36, 581
Sau96I	GGNCC	3 cut(s)	62, 266, 318
ScaI	AGTACT	1 cut(s)	367
SchI	GAGTC	3 cut(s)	230, 401, 455
ScrFI	CCNGG	3 cut(s)	182, 264, 305
SduI	GDGCHC	1 cut(s)	27
SfaNI	GCATC	3 cut(s)	193, 436, 540
SfcI	CTRYAG	1 cut(s)	312
SfuI	TTCGAA	2 cut(s)	150, 241
SinI	GGWCC	2 cut(s)	62, 266
SmiMI	CAYNNNNRTG	1 cut(s)	548
SmlI	CTYRAG	3 cut(s)	171, 297, 332
SmoI	CTYRAG	3 cut(s)	171, 297, 332
Sse9I	AATT	4 cut(s)	81, 146, 215, 400
SsiI	CCGC	3 cut(s)	51, 100, 107
SspMI	CTAG	4 cut(s)	78, 87, 104, 276
SstI	GAGCTC	1 cut(s)	27
StyD4I	CCNGG	3 cut(s)	180, 262, 303
StyI	CCWWGG	1 cut(s)	342
TaaI	ACNGT	2 cut(s)	370, 669
TaqI	TCGA	4 cut(s)	150, 224, 229, 241
TasI	AATT	4 cut(s)	81, 146, 215, 400
TatI	WGTACW	1 cut(s)	365
TauI	GCSGC	2 cut(s)	53, 103
TfiI	GAWTC	3 cut(s)	226, 259, 440
Tru1I	TTAA	1 cut(s)	399
Tru9I	TTAA	1 cut(s)	399
TscAI	CASTG	2 cut(s)	213, 550
TseFI	GTSAC	1 cut(s)	327
TseI	GCWGC	1 cut(s)	163
Tsp45I	GTSAC	1 cut(s)	327
TspDTI	ATGAA	5 cut(s)	176, 249, 272, 441, 516
TspGWI	ACGGA	1 cut(s)	33
TspRI	CASTG	2 cut(s)	213, 550
VpaK11BI	GGWCC	2 cut(s)	62, 266
XspI	CTAG	4 cut(s)	78, 87, 104, 276
ZrmI	AGTACT	1 cut(s)	367

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.