Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0004134

Physical Location & Seq

Genomic Coordinates Forward (+)

61871548 .. 61873355

Gene Structure 1808 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG427400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 651 bp

ATGTTTGGTATTTCGTACGGTGAGCTCTTCCTCTTGATCGGAGCCACCGCTGCTTTAGTCGGACCAAAAGATTTGCCTAGGATTGCAAGAATGGCGGGGCGGTTAGCAGGTCGGTCAATCGGGTATGTCCAGTTAGCTCGAGGCCAATTCGACAATGTAATGCAGCAATCTCAAGCTCGCCAGGTTCAAAAGGAACTTCAAGATGCGCTTGCACAGTTGGATTCGATTCCCATGACTCGAAAGCTGATGGAAAATGCTGTGGAACTTGCCTCTCCACATAATGGGGCCAACAGTTCAATTGAGAATCCTAAGAAGGAAGTGAAGTTGACGACTAGTGTGATAAAGGATAATATTAACTTCAGAACCTCAGAATCACTTAATTTGCATACACAAGCCACTGCATATGCTAAATTGGCTGAATCTGCTGCTGTGAACACTAGCTTCTTGAAAAGTAGTGAAGAGAAAGAGAGACTTATTGATGAAAATGGCCTTTTCACTGTTCTTCCAATTTCAGCTGAAAGCACCGGAATGGTACCAAAACGCAAGGAAAACGTTGAAGGATCAGACATTGTGTTGGAAGCAGTGCTTGAAGCAGAGGTAGCACGTAACACCAAAGATTTCTTCTCACAGGCTGAAAATCAAATACAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

216

Amino Acids

23.64

Weight (kDa)

5.57

Isoelectric Point (pI)

30.43

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004134)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G43680 AT5G43680
fragaria_vesca	FvH4_4g02310
malus_domestica	MD04G1026200.v1.1
prunus_persica	Prupe.1G027700_v2.0.a1 Prupe.1G027700_v2.0.a1 Prupe.1G027700_v2.0.a1 Prupe.1G027700_v2.0.a1 Prupe.1G175900_v2.0.a1 Prupe.1G175900_v2.0.a1 Prupe.1G175900_v2.0.a1 Prupe.1G175900_v2.0.a1 Prupe.1G175900_v2.0.a1 Prupe.2G050700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0389631
rosa_laevigata	RLG00000009965 RLG00000019817
rosa_multiflora	Rmu_sc0007419.1_g000005 Rmu_sc0034173.1_g000001
rosa_roxburghii	Rroxscaffold_5G00335620
rosa_rugosa	Rorug02G0358300 Rorug03G0324300 Rorug03G0324400 Rorug03G0324500 Rorug03G0324600
rosa_samantha	Rh2AG407700 Rh2CG393700 Rh2DG427400 Rh4AG029100 Rh4BG022300 Rh4CG031100 Rh4DG022800
rosa_wichuraiana	Rw4G002170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	98
Acc65I	GGTACC	1 cut(s)	532
AccB1I	GGYRCC	1 cut(s)	532
AccB7I	CCANNNNNTGG	1 cut(s)	281
AciI	CCGC	3 cut(s)	48, 95, 100
AclI	AACGTT	1 cut(s)	552
AclWI	GGATC	1 cut(s)	568
AcuI	CTGAAG	1 cut(s)	343
AfaI	GTAC	2 cut(s)	17, 534
AfiI	CCNNNNNNNGG	1 cut(s)	281
AgsI	TTSAA	6 cut(s)	188, 200, 297, 448, 557, 590
AhlI	ACTAGT	1 cut(s)	332
AjnI	CCWGG	1 cut(s)	180
AjuI	GAANNNNNNNTTGG	2 cut(s)	605, 637
AluBI	AGCT	6 cut(s)	25, 137, 176, 244, 441, 515
AluI	AGCT	6 cut(s)	25, 137, 176, 244, 441, 515
Alw21I	GWGCWC	1 cut(s)	27
Alw26I	GTCTC	1 cut(s)	463
AlwI	GGATC	1 cut(s)	568
Ama87I	CYCGRG	1 cut(s)	138
AoxI	GGCC	3 cut(s)	142, 285, 487
ApeKI	GCWGC	3 cut(s)	50, 163, 425
Asp718I	GGTACC	1 cut(s)	532
AspA2I	CCTAGG	1 cut(s)	77
AspLEI	GCGC	1 cut(s)	208
AspS9I	GGNCC	2 cut(s)	62, 285
AsuHPI	GGTGA	1 cut(s)	32
AvaI	CYCGRG	1 cut(s)	138
AvaII	GGWCC	1 cut(s)	62
AvrII	CCTAGG	1 cut(s)	77
BanI	GGYRCC	1 cut(s)	532
BanII	GRGCYC	1 cut(s)	27
Bbv12I	GWGCWC	1 cut(s)	27
BbvI	GCAGC	3 cut(s)	37, 175, 412
BccI	CCATC	1 cut(s)	241
BciT130I	CCWGG	1 cut(s)	182
BcoDI	GTCTC	1 cut(s)	463
BcuI	ACTAGT	1 cut(s)	332
BfaI	CTAG	3 cut(s)	78, 333, 438
BfuAI	ACCTGC	1 cut(s)	98
BisI	GCNGC	3 cut(s)	51, 164, 426
BlnI	CCTAGG	1 cut(s)	77
BlsI	GCNGC	3 cut(s)	52, 165, 427
Bme1390I	CCNGG	1 cut(s)	182
Bme18I	GGWCC	1 cut(s)	62
BmeT110I	CYCGRG	1 cut(s)	138
BmgT120I	GGNCC	2 cut(s)	62, 285
BmiI	GGNNCC	3 cut(s)	43, 286, 534
BmrFI	CCNGG	1 cut(s)	182
BmsI	GCATC	1 cut(s)	193
BpuEI	CTTGAG	1 cut(s)	156
BsaAI	YACGTR	1 cut(s)	605
BsaJI	CCNNGG	1 cut(s)	77
BsaWI	WCCGGW	1 cut(s)	524
Bsc4I	CCNNNNNNNGG	1 cut(s)	281
Bse1I	ACTGG	1 cut(s)	130
BseBI	CCWGG	1 cut(s)	182
BseDI	CCNNGG	1 cut(s)	77
BseLI	CCNNNNNNNGG	1 cut(s)	281
BseMII	CTCAG	1 cut(s)	381
BseNI	ACTGG	1 cut(s)	130
BseXI	GCAGC	3 cut(s)	37, 175, 412
BshFI	GGCC	3 cut(s)	144, 287, 489
BshNI	GGYRCC	1 cut(s)	532
BsiHKAI	GWGCWC	1 cut(s)	27
BsiHKCI	CYCGRG	1 cut(s)	138
BsiSI	CCGG	1 cut(s)	525
BsiWI	CGTACG	1 cut(s)	15
BslI	CCNNNNNNNGG	1 cut(s)	281
BsmAI	GTCTC	1 cut(s)	463
BsnI	GGCC	3 cut(s)	144, 287, 489
BsoBI	CYCGRG	1 cut(s)	138
Bsp1286I	GDGCHC	1 cut(s)	27
Bsp143I	GATC	2 cut(s)	36, 560
BspACI	CCGC	3 cut(s)	48, 95, 100
BspANI	GGCC	3 cut(s)	144, 287, 489
BspCNI	CTCAG	1 cut(s)	380
BspLI	GGNNCC	3 cut(s)	43, 286, 534
BspMI	ACCTGC	1 cut(s)	98
BspPI	GGATC	1 cut(s)	568
BspQI	GCTCTTC	1 cut(s)	32
BspT107I	GGYRCC	1 cut(s)	532
BsrI	ACTGG	1 cut(s)	130
BssECI	CCNNGG	1 cut(s)	77
BssMI	GATC	2 cut(s)	36, 560
BssT1I	CCWWGG	1 cut(s)	77
Bst2UI	CCWGG	1 cut(s)	182
Bst4CI	ACNGT	4 cut(s)	20, 216, 293, 499
Bst6I	CTCTTC	2 cut(s)	32, 453
BstBAI	YACGTR	1 cut(s)	605
BstC8I	GCNNGC	2 cut(s)	178, 210
BstDEI	CTNAG	2 cut(s)	309, 367
BstHHI	GCGC	1 cut(s)	208
BstKTI	GATC	2 cut(s)	39, 563
BstMAI	GTCTC	1 cut(s)	463
BstMBI	GATC	2 cut(s)	36, 560
BstMWI	GCNNNNNNNGC	5 cut(s)	50, 92, 413, 422, 599
BstNI	CCWGG	1 cut(s)	182
BstSCI	CCNGG	1 cut(s)	180
BstV1I	GCAGC	3 cut(s)	37, 175, 412
BsuRI	GGCC	3 cut(s)	144, 287, 489
BtsI	GCAGTG	2 cut(s)	396, 588
BtsIMutI	CAGTG	3 cut(s)	396, 495, 588
BveI	ACCTGC	1 cut(s)	98
Cac8I	GCNNGC	2 cut(s)	178, 210
CfoI	GCGC	1 cut(s)	208
Cfr13I	GGNCC	2 cut(s)	62, 285
Csp6I	GTAC	2 cut(s)	16, 533
CviAII	CATG	1 cut(s)	232
CviQI	GTAC	2 cut(s)	16, 533
DdeI	CTNAG	2 cut(s)	309, 367
DpnI	GATC	2 cut(s)	38, 562
DpnII	GATC	2 cut(s)	36, 560
Eam1104I	CTCTTC	2 cut(s)	32, 453
EarI	CTCTTC	2 cut(s)	32, 453
Ecl136II	GAGCTC	1 cut(s)	25
Eco130I	CCWWGG	1 cut(s)	77
Eco24I	GRGCYC	1 cut(s)	27
Eco47I	GGWCC	1 cut(s)	62
Eco53kI	GAGCTC	1 cut(s)	25
Eco57I	CTGAAG	1 cut(s)	343
Eco88I	CYCGRG	1 cut(s)	138
EcoICRI	GAGCTC	1 cut(s)	25
EcoRII	CCWGG	1 cut(s)	180
EcoT14I	CCWWGG	1 cut(s)	77
EcoT38I	GRGCYC	1 cut(s)	27
ErhI	CCWWGG	1 cut(s)	77
FaeI	CATG	1 cut(s)	235
FaiI	YATR	6 cut(s)	126, 233, 279, 387, 403, 405
FalI	AAGNNNNNCTT	6 cut(s)	192, 224, 456, 488, 570, 602
FatI	CATG	1 cut(s)	231
FauI	CCCGC	1 cut(s)	88
FauNDI	CATATG	1 cut(s)	403
Fnu4HI	GCNGC	3 cut(s)	51, 164, 426
FriOI	GRGCYC	1 cut(s)	27
Fsp4HI	GCNGC	3 cut(s)	51, 164, 426
FspBI	CTAG	3 cut(s)	78, 333, 438
GlaI	GCGC	1 cut(s)	207
GluI	GCNGC	3 cut(s)	51, 164, 426
HaeIII	GGCC	3 cut(s)	144, 287, 489
HapII	CCGG	1 cut(s)	525
HhaI	GCGC	1 cut(s)	208
Hin1II	CATG	1 cut(s)	235
Hin6I	GCGC	1 cut(s)	206
HinP1I	GCGC	1 cut(s)	206
HincII	GTYRAC	1 cut(s)	327
HindII	GTYRAC	1 cut(s)	327
HinfI	GANTC	6 cut(s)	221, 226, 235, 304, 371, 419
HpaII	CCGG	1 cut(s)	525
HphI	GGTGA	1 cut(s)	32
Hpy166II	GTNNAC	2 cut(s)	327, 433
Hpy188I	TCNGA	5 cut(s)	41, 62, 362, 370, 565
Hpy188III	TCNNGA	3 cut(s)	34, 200, 445
Hpy8I	GTNNAC	2 cut(s)	327, 433
HpyAV	CCTTC	2 cut(s)	307, 551
HpyCH4III	ACNGT	4 cut(s)	20, 216, 293, 499
HpyCH4IV	ACGT	2 cut(s)	552, 604
HpyCH4V	TGCA	5 cut(s)	86, 163, 212, 385, 401
HpyF10VI	GCNNNNNNNGC	5 cut(s)	50, 92, 413, 422, 599
HpyF3I	CTNAG	2 cut(s)	309, 367
HpySE526I	ACGT	2 cut(s)	552, 604
Hsp92II	CATG	1 cut(s)	235
HspAI	GCGC	1 cut(s)	206
KpnI	GGTACC	1 cut(s)	536
Kzo9I	GATC	2 cut(s)	36, 560
LguI	GCTCTTC	1 cut(s)	32
LmnI	GCTCC	1 cut(s)	41
LpnPI	CCDG	6 cut(s)	93, 143, 167, 194, 538, 614
Lsp1109I	GCAGC	3 cut(s)	37, 175, 412
LweI	GCATC	1 cut(s)	193
MaeI	CTAG	3 cut(s)	78, 333, 438
MaeII	ACGT	2 cut(s)	552, 604
MaeIII	GTNAC	1 cut(s)	605
MalI	GATC	2 cut(s)	38, 562
MboI	GATC	2 cut(s)	36, 560
MboII	GAAGA	4 cut(s)	19, 470, 494, 613
MfeI	CAATTG	1 cut(s)	297
MhlI	GDGCHC	1 cut(s)	27
MluCI	AATT	5 cut(s)	146, 297, 379, 410, 507
MlyI	GAGTC	1 cut(s)	229
MmeI	TCCRAC	3 cut(s)	40, 198, 555
MnlI	CCTC	5 cut(s)	41, 134, 280, 376, 589
MseI	TTAA	2 cut(s)	354, 378
MslI	CAYNNNNRTG	1 cut(s)	527
MspA1I	CMGCKG	2 cut(s)	50, 515
MspI	CCGG	1 cut(s)	525
MspR9I	CCNGG	1 cut(s)	182
MunI	CAATTG	1 cut(s)	297
MvaI	CCWGG	1 cut(s)	182
MwoI	GCNNNNNNNGC	5 cut(s)	50, 92, 413, 422, 599
NdeI	CATATG	1 cut(s)	403
NdeII	GATC	2 cut(s)	36, 560
NlaIII	CATG	1 cut(s)	235
NlaIV	GGNNCC	3 cut(s)	43, 286, 534
PaeR7I	CTCGAG	1 cut(s)	138
PciSI	GCTCTTC	1 cut(s)	32
PfeI	GAWTC	5 cut(s)	221, 226, 304, 371, 419
Pfl23II	CGTACG	1 cut(s)	15
PflMI	CCANNNNNTGG	1 cut(s)	281
PkrI	GCNGC	3 cut(s)	52, 165, 427
PleI	GAGTC	1 cut(s)	229
PpsI	GAGTC	1 cut(s)	229
Ppu21I	YACGTR	1 cut(s)	605
Psp124BI	GAGCTC	1 cut(s)	27
Psp1406I	AACGTT	1 cut(s)	552
Psp6I	CCWGG	1 cut(s)	180
PspGI	CCWGG	1 cut(s)	180
PspLI	CGTACG	1 cut(s)	15
PspN4I	GGNNCC	3 cut(s)	43, 286, 534
PspPI	GGNCC	2 cut(s)	62, 285
PspXI	VCTCGAGB	1 cut(s)	138
PvuII	CAGCTG	1 cut(s)	515
RsaI	GTAC	2 cut(s)	17, 534
RsaNI	GTAC	2 cut(s)	16, 533
RseI	CAYNNNNRTG	1 cut(s)	527
SacI	GAGCTC	1 cut(s)	27
SapI	GCTCTTC	1 cut(s)	32
SaqAI	TTAA	2 cut(s)	354, 378
SatI	GCNGC	3 cut(s)	51, 164, 426
Sau3AI	GATC	2 cut(s)	36, 560
Sau96I	GGNCC	2 cut(s)	62, 285
SchI	GAGTC	1 cut(s)	229
ScrFI	CCNGG	1 cut(s)	182
SduI	GDGCHC	1 cut(s)	27
SfaNI	GCATC	1 cut(s)	193
Sfr274I	CTCGAG	1 cut(s)	138
SinI	GGWCC	1 cut(s)	62
SlaI	CTCGAG	1 cut(s)	138
SmiMI	CAYNNNNRTG	1 cut(s)	527
SmlI	CTYRAG	2 cut(s)	138, 171
SmoI	CTYRAG	2 cut(s)	138, 171
SpeI	ACTAGT	1 cut(s)	332
Sse9I	AATT	5 cut(s)	146, 297, 379, 410, 507
SsiI	CCGC	3 cut(s)	48, 95, 100
SspI	AATATT	1 cut(s)	352
SspMI	CTAG	3 cut(s)	78, 333, 438
SstI	GAGCTC	1 cut(s)	27
StyD4I	CCNGG	1 cut(s)	180
StyI	CCWWGG	1 cut(s)	77
TaaI	ACNGT	4 cut(s)	20, 216, 293, 499
TaiI	ACGT	2 cut(s)	555, 607
TaqI	TCGA	4 cut(s)	139, 150, 224, 238
TaqII	GACCGA	1 cut(s)	102
TasI	AATT	5 cut(s)	146, 297, 379, 410, 507
TfiI	GAWTC	5 cut(s)	221, 226, 304, 371, 419
Tru1I	TTAA	2 cut(s)	354, 378
Tru9I	TTAA	2 cut(s)	354, 378
TscAI	CASTG	3 cut(s)	403, 502, 588
TseI	GCWGC	3 cut(s)	50, 163, 425
TspDTI	ATGAA	1 cut(s)	495
TspRI	CASTG	3 cut(s)	403, 502, 588
Van91I	CCANNNNNTGG	1 cut(s)	281
VpaK11BI	GGWCC	1 cut(s)	62
XhoI	CTCGAG	1 cut(s)	138
XmaJI	CCTAGG	1 cut(s)	77
XspI	CTAG	3 cut(s)	78, 333, 438

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.