Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0004134

Physical Location & Seq

Genomic Coordinates Forward (+)

5863087 .. 5865069

Gene Structure 1983 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G050700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 621 bp

ATGTTTGGTATTTCATATGGAAAGCTCTTCCTCTTGATTGGAGCCACAGCTGCTGTAGTCGCAGGGAGGTTAGCGGGTCGGTCAATCGGGTATGTTCAGTTAGCTAGAGGCCAATTCGATAATGTCATGCAGCAGTCTCAAGCCCACCAGGTTCATAAAGAACTTCAAGATGCATTCGCTCAACTAGAGTCGATTCGTTATGAAGTCCGGAGTATATCACTTATGAATCCTGGTCCTATGGCTCGAAGGCTGATGGATAATCCTCAAGACCCGGCTTCTCTGAGTGGTTGTAGTATCCTTAGTAGCCATACATTGCTGGATGATACTTTCAGAACCTCAGACTCACCTAATTTGCATAGCCAAGCAACTGCGTATGCAAAGTTGGCTGAATCTGATGTTGTGAAGACTGGCTCTTTGAAGAGCAGTGCAGAGCAAGAAAACCTTAAAGATGAAAGTGGTCTTTTCATTGTCCTCCCAATTTCAGCTGAAAGCACTGGGATGCTACCAAATCGCAAAGAGAATGTTAAGGGAACAGACATTGTGTTGGAAGCATTAGTTGAAGCAGAGGTAGCACGTAATGCCAAAGATTTCTTTTCACAGCCTGAAAATCAAATACAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

207

Amino Acids

22.41

Weight (kDa)

5.39

Isoelectric Point (pI)

36.43

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004134)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G43680 AT5G43680
fragaria_vesca	FvH4_4g02310
malus_domestica	MD04G1026200.v1.1
prunus_persica	Prupe.1G027700_v2.0.a1 Prupe.1G027700_v2.0.a1 Prupe.1G027700_v2.0.a1 Prupe.1G027700_v2.0.a1 Prupe.1G175900_v2.0.a1 Prupe.1G175900_v2.0.a1 Prupe.1G175900_v2.0.a1 Prupe.1G175900_v2.0.a1 Prupe.1G175900_v2.0.a1 Prupe.2G050700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0389631
rosa_laevigata	RLG00000009965 RLG00000019817
rosa_multiflora	Rmu_sc0007419.1_g000005 Rmu_sc0034173.1_g000001
rosa_roxburghii	Rroxscaffold_5G00335620
rosa_rugosa	Rorug02G0358300 Rorug03G0324300 Rorug03G0324400 Rorug03G0324500 Rorug03G0324600
rosa_samantha	Rh2AG407700 Rh2CG393700 Rh2DG427400 Rh4AG029100 Rh4BG022300 Rh4CG031100 Rh4DG022800
rosa_wichuraiana	Rw4G002170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	207
AciI	CCGC	1 cut(s)	74
AgsI	TTSAA	3 cut(s)	167, 418, 560
AjnI	CCWGG	2 cut(s)	147, 229
AluBI	AGCT	4 cut(s)	25, 50, 104, 485
AluI	AGCT	4 cut(s)	25, 50, 104, 485
Alw26I	GTCTC	1 cut(s)	141
AlwNI	CAGNNNCTG	1 cut(s)	53
Aor13HI	TCCGGA	1 cut(s)	207
AoxI	GGCC	1 cut(s)	109
ApeKI	GCWGC	2 cut(s)	50, 130
ArsI	GACNNNNNNTTYG	2 cut(s)	397, 429
AspS9I	GGNCC	1 cut(s)	233
AsuC2I	CCSGG	1 cut(s)	272
AsuHPI	GGTGA	1 cut(s)	336
AvaII	GGWCC	1 cut(s)	233
BbsI	GAAGAC	1 cut(s)	410
BbvI	GCAGC	2 cut(s)	37, 142
BccI	CCATC	1 cut(s)	247
BciT130I	CCWGG	2 cut(s)	149, 231
BciVI	GTATCC	1 cut(s)	305
BcnI	CCSGG	1 cut(s)	272
BcoDI	GTCTC	1 cut(s)	141
BfaI	CTAG	2 cut(s)	105, 185
BfmI	CTRYAG	1 cut(s)	54
BfuI	GTATCC	1 cut(s)	305
BisI	GCNGC	2 cut(s)	51, 131
BlsI	GCNGC	2 cut(s)	52, 132
Bme1390I	CCNGG	3 cut(s)	149, 231, 272
Bme18I	GGWCC	1 cut(s)	233
BmgT120I	GGNCC	1 cut(s)	233
BmiI	GGNNCC	1 cut(s)	43
BmrFI	CCNGG	3 cut(s)	149, 231, 272
BmrI	ACTGGG	1 cut(s)	504
BmsI	GCATC	2 cut(s)	160, 489
BmuI	ACTGGG	1 cut(s)	504
BpiI	GAAGAC	1 cut(s)	410
BpuEI	CTTGAG	2 cut(s)	123, 249
BpuMI	CCSGG	1 cut(s)	272
BsaAI	YACGTR	1 cut(s)	575
BsaWI	WCCGGW	1 cut(s)	207
Bse1I	ACTGG	2 cut(s)	412, 499
Bse3DI	GCAATG	1 cut(s)	311
BseAI	TCCGGA	1 cut(s)	207
BseBI	CCWGG	2 cut(s)	149, 231
BseGI	GGATG	2 cut(s)	325, 504
BseMI	GCAATG	1 cut(s)	311
BseMII	CTCAG	2 cut(s)	272, 351
BseNI	ACTGG	2 cut(s)	412, 499
BseXI	GCAGC	2 cut(s)	37, 142
BsgI	GTGCAG	1 cut(s)	447
BshFI	GGCC	1 cut(s)	111
BsiSI	CCGG	2 cut(s)	208, 272
BsmAI	GTCTC	1 cut(s)	141
BsmI	GAATGC	1 cut(s)	173
BsnI	GGCC	1 cut(s)	111
Bsp13I	TCCGGA	1 cut(s)	207
BspACI	CCGC	1 cut(s)	74
BspANI	GGCC	1 cut(s)	111
BspCNI	CTCAG	2 cut(s)	273, 350
BspEI	TCCGGA	1 cut(s)	207
BspLI	GGNNCC	1 cut(s)	43
BspQI	GCTCTTC	2 cut(s)	32, 413
BsrDI	GCAATG	1 cut(s)	311
BsrI	ACTGG	2 cut(s)	412, 499
Bst2UI	CCWGG	2 cut(s)	149, 231
Bst4CI	ACNGT	1 cut(s)	618
Bst6I	CTCTTC	2 cut(s)	32, 413
BstAPI	GCANNNNNTGC	1 cut(s)	578
BstBAI	YACGTR	1 cut(s)	575
BstDEI	CTNAG	3 cut(s)	281, 299, 337
BstF5I	GGATG	2 cut(s)	325, 504
BstMAI	GTCTC	1 cut(s)	141
BstMWI	GCNNNNNNNGC	5 cut(s)	50, 59, 383, 569, 578
BstNI	CCWGG	2 cut(s)	149, 231
BstSCI	CCNGG	3 cut(s)	147, 229, 270
BstSFI	CTRYAG	1 cut(s)	54
BstV1I	GCAGC	2 cut(s)	37, 142
BstV2I	GAAGAC	1 cut(s)	410
BsuI	GTATCC	1 cut(s)	305
BsuRI	GGCC	1 cut(s)	111
BtsCI	GGATG	2 cut(s)	325, 504
BtsI	GCAGTG	1 cut(s)	430
BtsIMutI	CAGTG	2 cut(s)	430, 492
CaiI	CAGNNNCTG	1 cut(s)	53
Cfr13I	GGNCC	1 cut(s)	233
CsiI	ACCWGGT	1 cut(s)	147
CviAII	CATG	1 cut(s)	127
DdeI	CTNAG	3 cut(s)	281, 299, 337
Eam1104I	CTCTTC	2 cut(s)	32, 413
EarI	CTCTTC	2 cut(s)	32, 413
Eco47I	GGWCC	1 cut(s)	233
EcoRII	CCWGG	2 cut(s)	147, 229
EcoT22I	ATGCAT	1 cut(s)	175
FaeI	CATG	1 cut(s)	130
FalI	AAGNNNNNCTT	2 cut(s)	426, 458
FatI	CATG	1 cut(s)	126
FauI	CCCGC	1 cut(s)	67
FauNDI	CATATG	1 cut(s)	16
Fnu4HI	GCNGC	2 cut(s)	51, 131
FokI	GGATG	2 cut(s)	332, 511
Fsp4HI	GCNGC	2 cut(s)	51, 131
FspBI	CTAG	2 cut(s)	105, 185
GluI	GCNGC	2 cut(s)	51, 131
HaeIII	GGCC	1 cut(s)	111
HapII	CCGG	2 cut(s)	208, 272
Hin1II	CATG	1 cut(s)	130
HinfI	GANTC	5 cut(s)	188, 193, 226, 341, 389
HpaII	CCGG	2 cut(s)	208, 272
HphI	GGTGA	1 cut(s)	336
Hpy188I	TCNGA	4 cut(s)	282, 332, 340, 394
Hpy188III	TCNNGA	4 cut(s)	34, 167, 208, 266
HpyAV	CCTTC	1 cut(s)	240
HpyCH4III	ACNGT	1 cut(s)	618
HpyCH4IV	ACGT	1 cut(s)	574
HpyCH4V	TGCA	5 cut(s)	130, 173, 355, 377, 428
HpyF10VI	GCNNNNNNNGC	5 cut(s)	50, 59, 383, 569, 578
HpyF3I	CTNAG	3 cut(s)	281, 299, 337
HpySE526I	ACGT	1 cut(s)	574
Hsp92II	CATG	1 cut(s)	130
Kpn2I	TCCGGA	1 cut(s)	207
LguI	GCTCTTC	2 cut(s)	32, 413
LmnI	GCTCC	1 cut(s)	41
Lsp1109I	GCAGC	2 cut(s)	37, 142
LweI	GCATC	2 cut(s)	160, 489
MabI	ACCWGGT	1 cut(s)	147
MaeI	CTAG	2 cut(s)	105, 185
MaeII	ACGT	1 cut(s)	574
MboII	GAAGA	3 cut(s)	19, 415, 430
MluCI	AATT	3 cut(s)	113, 349, 477
MlyI	GAGTC	2 cut(s)	197, 335
MmeI	TCCRAC	1 cut(s)	525
MnlI	CCTC	7 cut(s)	41, 60, 101, 273, 346, 482, 559
Mph1103I	ATGCAT	1 cut(s)	175
MroI	TCCGGA	1 cut(s)	207
MseI	TTAA	2 cut(s)	444, 525
MslI	CAYNNNNRTG	1 cut(s)	497
MspA1I	CMGCKG	2 cut(s)	50, 485
MspI	CCGG	2 cut(s)	208, 272
MspR9I	CCNGG	3 cut(s)	149, 231, 272
Mva1269I	GAATGC	1 cut(s)	173
MvaI	CCWGG	2 cut(s)	149, 231
MwoI	GCNNNNNNNGC	5 cut(s)	50, 59, 383, 569, 578
NciI	CCSGG	1 cut(s)	272
NdeI	CATATG	1 cut(s)	16
NlaIII	CATG	1 cut(s)	130
NlaIV	GGNNCC	1 cut(s)	43
NsiI	ATGCAT	1 cut(s)	175
PciSI	GCTCTTC	2 cut(s)	32, 413
PctI	GAATGC	1 cut(s)	173
PfeI	GAWTC	3 cut(s)	193, 226, 389
PkrI	GCNGC	2 cut(s)	52, 132
PleI	GAGTC	2 cut(s)	196, 335
PpsI	GAGTC	2 cut(s)	196, 335
Ppu21I	YACGTR	1 cut(s)	575
Psp6I	CCWGG	2 cut(s)	147, 229
PspGI	CCWGG	2 cut(s)	147, 229
PspN4I	GGNNCC	1 cut(s)	43
PspPI	GGNCC	1 cut(s)	233
PstNI	CAGNNNCTG	1 cut(s)	53
PvuII	CAGCTG	2 cut(s)	50, 485
RseI	CAYNNNNRTG	1 cut(s)	497
SapI	GCTCTTC	2 cut(s)	32, 413
SaqAI	TTAA	2 cut(s)	444, 525
SatI	GCNGC	2 cut(s)	51, 131
Sau96I	GGNCC	1 cut(s)	233
SchI	GAGTC	2 cut(s)	197, 335
ScrFI	CCNGG	3 cut(s)	149, 231, 272
SexAI	ACCWGGT	1 cut(s)	147
SfaNI	GCATC	2 cut(s)	160, 489
SfcI	CTRYAG	1 cut(s)	54
SinI	GGWCC	1 cut(s)	233
SmiMI	CAYNNNNRTG	1 cut(s)	497
SmlI	CTYRAG	2 cut(s)	138, 264
SmoI	CTYRAG	2 cut(s)	138, 264
Sse9I	AATT	3 cut(s)	113, 349, 477
SsiI	CCGC	1 cut(s)	74
SspMI	CTAG	2 cut(s)	105, 185
StyD4I	CCNGG	3 cut(s)	147, 229, 270
TaaI	ACNGT	1 cut(s)	618
TaiI	ACGT	1 cut(s)	577
TaqI	TCGA	3 cut(s)	117, 191, 244
TaqII	GACCGA	1 cut(s)	69
TasI	AATT	3 cut(s)	113, 349, 477
TfiI	GAWTC	3 cut(s)	193, 226, 389
Tru1I	TTAA	2 cut(s)	444, 525
Tru9I	TTAA	2 cut(s)	444, 525
TscAI	CASTG	2 cut(s)	430, 499
TseI	GCWGC	2 cut(s)	50, 130
TspDTI	ATGAA	5 cut(s)	143, 216, 239, 454, 465
TspRI	CASTG	2 cut(s)	430, 499
VpaK11BI	GGWCC	1 cut(s)	233
XspI	CTAG	2 cut(s)	105, 185
Zsp2I	ATGCAT	1 cut(s)	175

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.