Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0003227

Physical Location & Seq

Genomic Coordinates Forward (+)

35592124 .. 35599671

Gene Structure 7548 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0324600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 870 bp

ATGACTACTACTTTGGATATGTCACTTGATGATATGATTAAGAGCAAAAGGGGTAATCGTGATAGAAACAGAGAACGTGGCAGGGCTCCTCGCGGTGGTCGTGGCCGTGGCGGCGGCGGCGGCCGTGGGTCCCGTGGGTCTTTTATGGGTGGAAGAATGACAGGGGCAGTTCGGAGAGGTCCTCCCCCCGCAATAAATACTCGACCATCTGCCCACACCATTGCCAAGTCCTTCCGCAGAACCAAGCGTTTTCCGTGGCAGCCAGATTTGTTTGAAGAAAGCCTTAGAGCTGCAGGGATTTCAGGGATTGAAATCGGCACAAAATTATATGTGTCGAACTTGCACTATGGAGTGACAAATGAGGATATAAGGGAACTCTTCTCTGAGATCGGAGAGCTGAAGCGATATGCAGTTCATTTTGATAAAAATGGACGACCAAGTGGCTCAGCTGAAGTGGTTTATACCAGAAGAAGTGACGCATTTGCAGCATTGAAACGCTATAATAATGTCCTATTGGATGGGAAGCCTATGAAGATCGAGATTGTTGGTGCCAATGAGGGAATGCCAATTTCTGCACGTGTCAGTGTGACAGGAGTACAAGGAAGAAAGAAGAGGACAGTTGTAATGACGCCCAGACCTGGTCGTGCTGGTGGCTATGCTTTGCCTGCGGTTAATCGTGGTCCTGGCCCTTCTAGGAGCACTCGTGGAGGGATCAGGAATGGCCGTGGAATTCCACGTGGTCGTGGCCGTGGTCGTGGGCGTGGGCGTGGGCATGGACAAGGACCTGAGAGGAAGAAACCTGTTGACAAGTCAGTTGATGAACTTGACAAGGAACTTGATAGCTATCATGCAGAAGCCATGCAAACTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

289

Amino Acids

31.53

Weight (kDa)

11.31

Isoelectric Point (pI)

36.66

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	109 - 177	4.1e-14	RNA recognition motif
FoP_duplication	PF13865	230 - 284	1.7e-09	C-terminal duplication domain of Friend of PRMT1

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003227)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G07910 AT1G07910
fragaria_vesca	FvH4_3g33360 FvH4_3g33360 FvH4_3g33360 FvH4_3g33360 FvH4_3g33360 FvH4_3g33360 FvH4_3g33360 FvH4_3g33360 FvH4_4g02320
malus_domestica	MD03G1112400.v1.1 MD11G1129800.v1.1
prunus_persica	Prupe.6G094700_v2.0.a1
pyrus_communis	pycom11g10750 pycom11g10760
rosa_chinensis	RchiOBHm_Chr4g0389641 RchiOBHm_Chr5g0060751
rosa_laevigata	RLG00000009964 RLG00000035390
rosa_multiflora	Rmu_co8520825.1_g000001 Rmu_sc0006568.1_g000004 Rmu_sc0007419.1_g000006
rosa_roxburghii	Rroxscaffold_1G00019960 Rroxscaffold_5G00335630
rosa_rugosa	Rorug03G0324600 Rorug05G0333400
rosa_samantha	Rh4AG029200 Rh4BG022400 Rh4CG031200 Rh4DG022900 Rh5AG396400 Rh5BG408600 Rh5CG433200 Rh5DG423800
rosa_wichuraiana	Rw4G002180 Rw5G037370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	548
AccII	CGCG	1 cut(s)	93
AciI	CCGC	8 cut(s)	93, 111, 114, 117, 120, 189, 235, 668
AclWI	GGATC	1 cut(s)	719
AcoI	YGGCCR	4 cut(s)	103, 121, 721, 745
AcsI	RAATTY	1 cut(s)	729
AcuI	CTGAAG	2 cut(s)	419, 471
AcvI	CACGTG	2 cut(s)	578, 737
AcyI	GRCGYC	1 cut(s)	629
AfaI	GTAC	1 cut(s)	597
AfiI	CCNNNNNNNGG	2 cut(s)	95, 638
AflIII	ACRYGT	1 cut(s)	577
AgsI	TTSAA	3 cut(s)	275, 311, 493
AjnI	CCWGG	2 cut(s)	637, 682
AluBI	AGCT	4 cut(s)	290, 397, 449, 843
AluI	AGCT	4 cut(s)	290, 397, 449, 843
Alw21I	GWGCWC	1 cut(s)	701
AlwI	GGATC	1 cut(s)	719
AoxI	GGCC	5 cut(s)	103, 121, 685, 721, 745
ApeKI	GCWGC	3 cut(s)	259, 290, 485
ApoI	RAATTY	1 cut(s)	729
ArsI	GACNNNNNNTTYG	1 cut(s)	27
AspS9I	GGNCC	5 cut(s)	129, 179, 680, 686, 782
AvaII	GGWCC	4 cut(s)	129, 179, 680, 782
BanI	GGYRCC	1 cut(s)	548
BanII	GRGCYC	1 cut(s)	88
BauI	CACGAG	1 cut(s)	702
BbrPI	CACGTG	2 cut(s)	578, 737
Bbv12I	GWGCWC	1 cut(s)	701
BbvI	GCAGC	3 cut(s)	271, 277, 497
BccI	CCATC	2 cut(s)	214, 512
BceAI	ACGGC	4 cut(s)	90, 108, 708, 732
BciT130I	CCWGG	2 cut(s)	639, 684
BfaI	CTAG	1 cut(s)	693
BfmI	CTRYAG	1 cut(s)	291
BglI	GCCNNNNNGGC	1 cut(s)	111
BisI	GCNGC	7 cut(s)	112, 115, 118, 121, 260, 291, 486
BlpI	GCTNAGC	1 cut(s)	445
BlsI	GCNGC	7 cut(s)	113, 116, 119, 122, 261, 292, 487
Bme1390I	CCNGG	2 cut(s)	639, 684
Bme18I	GGWCC	4 cut(s)	129, 179, 680, 782
BmgT120I	GGNCC	5 cut(s)	129, 179, 680, 686, 782
BmiI	GGNNCC	4 cut(s)	87, 130, 131, 550
BmrFI	CCNGG	2 cut(s)	639, 684
BplI	GAGNNNNNCTC	2 cut(s)	166, 198
Bpu1102I	GCTNAGC	1 cut(s)	445
BsaAI	YACGTR	2 cut(s)	578, 737
BsaBI	GATNNNNATC	2 cut(s)	311, 843
BsaHI	GRCGYC	1 cut(s)	629
BsaJI	CCNNGG	6 cut(s)	106, 124, 133, 254, 724, 748
BsaXI	ACNNNNNCTCC	2 cut(s)	688, 718
Bsc4I	CCNNNNNNNGG	2 cut(s)	95, 638
Bse3DI	GCAATG	1 cut(s)	219
Bse8I	GATNNNNATC	2 cut(s)	311, 843
BseBI	CCWGG	2 cut(s)	639, 684
BseDI	CCNNGG	6 cut(s)	106, 124, 133, 254, 724, 748
BseGI	GGATG	1 cut(s)	523
BseJI	GATNNNNATC	2 cut(s)	311, 843
BseLI	CCNNNNNNNGG	2 cut(s)	95, 638
BseMI	GCAATG	1 cut(s)	219
BseMII	CTCAG	3 cut(s)	375, 459, 777
BseRI	GAGGAG	1 cut(s)	78
BseX3I	CGGCCG	1 cut(s)	121
BseXI	GCAGC	3 cut(s)	271, 277, 497
BsgI	GTGCAG	1 cut(s)	558
Bsh1236I	CGCG	1 cut(s)	93
Bsh1285I	CGRYCG	1 cut(s)	124
BshFI	GGCC	5 cut(s)	105, 123, 687, 723, 747
BshNI	GGYRCC	1 cut(s)	548
BsiEI	CGRYCG	1 cut(s)	124
BsiHKAI	GWGCWC	1 cut(s)	701
BslFI	GGGAC	1 cut(s)	115
BslI	CCNNNNNNNGG	2 cut(s)	95, 638
BsmFI	GGGAC	1 cut(s)	115
BsmI	GAATGC	1 cut(s)	567
BsnI	GGCC	5 cut(s)	105, 123, 687, 723, 747
Bsp1286I	GDGCHC	2 cut(s)	88, 701
Bsp143I	GATC	3 cut(s)	387, 534, 711
Bsp1720I	GCTNAGC	1 cut(s)	445
BspACI	CCGC	8 cut(s)	93, 111, 114, 117, 120, 189, 235, 668
BspANI	GGCC	5 cut(s)	105, 123, 687, 723, 747
BspCNI	CTCAG	3 cut(s)	376, 458, 778
BspFNI	CGCG	1 cut(s)	93
BspLI	GGNNCC	4 cut(s)	87, 130, 131, 550
BspMAI	CTGCAG	1 cut(s)	295
BspPI	GGATC	1 cut(s)	719
BspT107I	GGYRCC	1 cut(s)	548
BsrDI	GCAATG	1 cut(s)	219
BssECI	CCNNGG	6 cut(s)	106, 124, 133, 254, 724, 748
BssMI	GATC	3 cut(s)	387, 534, 711
BssNI	GRCGYC	1 cut(s)	629
BssSI	CACGAG	1 cut(s)	702
Bst2BI	CACGAG	1 cut(s)	702
Bst2UI	CCWGG	2 cut(s)	639, 684
Bst4CI	ACNGT	1 cut(s)	619
Bst6I	CTCTTC	2 cut(s)	383, 605
BstACI	GRCGYC	1 cut(s)	629
BstBAI	YACGTR	2 cut(s)	578, 737
BstC8I	GCNNGC	1 cut(s)	666
BstDEI	CTNAG	5 cut(s)	284, 384, 445, 786, 867
BstDSI	CCRYGG	6 cut(s)	106, 124, 133, 254, 724, 748
BstF5I	GGATG	1 cut(s)	523
BstFNI	CGCG	1 cut(s)	93
BstKTI	GATC	3 cut(s)	390, 537, 714
BstMBI	GATC	3 cut(s)	387, 534, 711
BstMCI	CGRYCG	1 cut(s)	124
BstMWI	GCNNNNNNNGC	5 cut(s)	111, 117, 120, 485, 665
BstNI	CCWGG	2 cut(s)	639, 684
BstSCI	CCNGG	2 cut(s)	637, 682
BstSFI	CTRYAG	1 cut(s)	291
BstUI	CGCG	1 cut(s)	93
BstV1I	GCAGC	3 cut(s)	271, 277, 497
BstZI	CGGCCG	1 cut(s)	121
BsuRI	GGCC	5 cut(s)	105, 123, 687, 723, 747
BtgI	CCRYGG	6 cut(s)	106, 124, 133, 254, 724, 748
BtsCI	GGATG	1 cut(s)	523
BtsIMutI	CAGTG	1 cut(s)	589
Cac8I	GCNNGC	1 cut(s)	666
Cfr13I	GGNCC	5 cut(s)	129, 179, 680, 686, 782
CseI	GACGC	2 cut(s)	485, 637
CsiI	ACCWGGT	1 cut(s)	637
Csp6I	GTAC	1 cut(s)	596
CviAII	CATG	3 cut(s)	773, 848, 859
CviQI	GTAC	1 cut(s)	596
DdeI	CTNAG	5 cut(s)	284, 384, 445, 786, 867
DpnI	GATC	3 cut(s)	389, 536, 713
DpnII	GATC	3 cut(s)	387, 534, 711
EaeI	YGGCCR	4 cut(s)	103, 121, 721, 745
EagI	CGGCCG	1 cut(s)	121
Eam1104I	CTCTTC	2 cut(s)	383, 605
EarI	CTCTTC	2 cut(s)	383, 605
EclXI	CGGCCG	1 cut(s)	121
Eco24I	GRGCYC	1 cut(s)	88
Eco47I	GGWCC	4 cut(s)	129, 179, 680, 782
Eco52I	CGGCCG	1 cut(s)	121
Eco57I	CTGAAG	2 cut(s)	419, 471
Eco72I	CACGTG	2 cut(s)	578, 737
EcoO109I	RGGNCCY	3 cut(s)	129, 179, 782
EcoRI	GAATTC	1 cut(s)	729
EcoRII	CCWGG	2 cut(s)	637, 682
EcoT38I	GRGCYC	1 cut(s)	88
FaeI	CATG	3 cut(s)	776, 851, 862
FalI	AAGNNNNNCTT	2 cut(s)	267, 299
FaqI	GGGAC	1 cut(s)	115
FatI	CATG	3 cut(s)	772, 847, 858
FauI	CCCGC	1 cut(s)	196
Fnu4HI	GCNGC	7 cut(s)	112, 115, 118, 121, 260, 291, 486
FokI	GGATG	1 cut(s)	530
FriOI	GRGCYC	1 cut(s)	88
Fsp4HI	GCNGC	7 cut(s)	112, 115, 118, 121, 260, 291, 486
FspBI	CTAG	1 cut(s)	693
GluI	GCNGC	7 cut(s)	112, 115, 118, 121, 260, 291, 486
HaeIII	GGCC	5 cut(s)	105, 123, 687, 723, 747
HgaI	GACGC	2 cut(s)	485, 637
Hin1I	GRCGYC	1 cut(s)	629
Hin1II	CATG	3 cut(s)	776, 851, 862
HincII	GTYRAC	1 cut(s)	805
HindII	GTYRAC	1 cut(s)	805
Hpy166II	GTNNAC	1 cut(s)	805
Hpy188I	TCNGA	3 cut(s)	174, 385, 392
Hpy188III	TCNNGA	3 cut(s)	59, 538, 715
Hpy8I	GTNNAC	1 cut(s)	805
HpyAV	CCTTC	2 cut(s)	241, 699
HpyCH4III	ACNGT	1 cut(s)	619
HpyCH4IV	ACGT	3 cut(s)	76, 577, 736
HpyCH4V	TGCA	7 cut(s)	293, 343, 410, 485, 575, 851, 862
HpyF10VI	GCNNNNNNNGC	5 cut(s)	111, 117, 120, 485, 665
HpyF3I	CTNAG	5 cut(s)	284, 384, 445, 786, 867
HpySE526I	ACGT	3 cut(s)	76, 577, 736
Hsp92I	GRCGYC	1 cut(s)	629
Hsp92II	CATG	3 cut(s)	776, 851, 862
KflI	GGGWCCC	1 cut(s)	129
Kzo9I	GATC	3 cut(s)	387, 534, 711
LmnI	GCTCC	2 cut(s)	91, 696
Lsp1109I	GCAGC	3 cut(s)	271, 277, 497
MabI	ACCWGGT	1 cut(s)	637
MaeI	CTAG	1 cut(s)	693
MaeII	ACGT	3 cut(s)	76, 577, 736
MaeIII	GTNAC	4 cut(s)	21, 352, 473, 586
MalI	GATC	3 cut(s)	389, 536, 713
MboI	GATC	3 cut(s)	387, 534, 711
MboII	GAAGA	8 cut(s)	165, 287, 370, 480, 544, 615, 622, 805
MhlI	GDGCHC	2 cut(s)	88, 701
MluCI	AATT	3 cut(s)	323, 567, 729
MnlI	CCTC	8 cut(s)	99, 170, 192, 355, 550, 606, 701, 783
MseI	TTAA	2 cut(s)	39, 672
MspA1I	CMGCKG	1 cut(s)	449
MspR9I	CCNGG	2 cut(s)	639, 684
Mva1269I	GAATGC	1 cut(s)	567
MvaI	CCWGG	2 cut(s)	639, 684
MvnI	CGCG	1 cut(s)	93
MwoI	GCNNNNNNNGC	5 cut(s)	111, 117, 120, 485, 665
NdeII	GATC	3 cut(s)	387, 534, 711
NlaIII	CATG	3 cut(s)	776, 851, 862
NlaIV	GGNNCC	4 cut(s)	87, 130, 131, 550
NmuCI	GTSAC	4 cut(s)	21, 352, 473, 586
PcsI	WCGNNNNNNNCGW	1 cut(s)	97
PctI	GAATGC	1 cut(s)	567
PflFI	GACNNNGTC	1 cut(s)	639
PkrI	GCNGC	7 cut(s)	113, 116, 119, 122, 261, 292, 487
PmaCI	CACGTG	2 cut(s)	578, 737
PmlI	CACGTG	2 cut(s)	578, 737
Ppu21I	YACGTR	2 cut(s)	578, 737
PpuMI	RGGWCCY	3 cut(s)	129, 179, 782
Psp5II	RGGWCCY	3 cut(s)	129, 179, 782
Psp6I	CCWGG	2 cut(s)	637, 682
PspCI	CACGTG	2 cut(s)	578, 737
PspGI	CCWGG	2 cut(s)	637, 682
PspN4I	GGNNCC	4 cut(s)	87, 130, 131, 550
PspPI	GGNCC	5 cut(s)	129, 179, 680, 686, 782
PspPPI	RGGWCCY	3 cut(s)	129, 179, 782
PstI	CTGCAG	1 cut(s)	295
PsyI	GACNNNGTC	1 cut(s)	639
PvuII	CAGCTG	1 cut(s)	449
RsaI	GTAC	1 cut(s)	597
RsaNI	GTAC	1 cut(s)	596
SaqAI	TTAA	2 cut(s)	39, 672
SatI	GCNGC	7 cut(s)	112, 115, 118, 121, 260, 291, 486
Sau3AI	GATC	3 cut(s)	387, 534, 711
Sau96I	GGNCC	5 cut(s)	129, 179, 680, 686, 782
ScrFI	CCNGG	2 cut(s)	639, 684
SduI	GDGCHC	2 cut(s)	88, 701
SexAI	ACCWGGT	1 cut(s)	637
SfcI	CTRYAG	1 cut(s)	291
SinI	GGWCC	4 cut(s)	129, 179, 680, 782
Sse9I	AATT	3 cut(s)	323, 567, 729
SsiI	CCGC	8 cut(s)	93, 111, 114, 117, 120, 189, 235, 668
SspMI	CTAG	1 cut(s)	693
StyD4I	CCNGG	2 cut(s)	637, 682
TaaI	ACNGT	1 cut(s)	619
TaiI	ACGT	3 cut(s)	79, 580, 739
TaqI	TCGA	3 cut(s)	202, 335, 537
TasI	AATT	3 cut(s)	323, 567, 729
TatI	WGTACW	1 cut(s)	595
TauI	GCSGC	4 cut(s)	114, 117, 120, 123
Tru1I	TTAA	2 cut(s)	39, 672
Tru9I	TTAA	2 cut(s)	39, 672
TscAI	CASTG	1 cut(s)	589
TseFI	GTSAC	4 cut(s)	21, 352, 473, 586
TseI	GCWGC	3 cut(s)	259, 290, 485
Tsp45I	GTSAC	4 cut(s)	21, 352, 473, 586
TspDTI	ATGAA	3 cut(s)	404, 545, 834
TspGWI	ACGGA	1 cut(s)	243
TspRI	CASTG	1 cut(s)	589
Tth111I	GACNNNGTC	1 cut(s)	639
VpaK11BI	GGWCC	4 cut(s)	129, 179, 680, 782
XapI	RAATTY	1 cut(s)	729
XspI	CTAG	1 cut(s)	693

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.