Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0003227

Physical Location & Seq

Genomic Coordinates Reverse (-)

59974510 .. 59990171

Gene Structure 15662 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG433200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2859 bp

ATGTACGCTGGTAATGAGGGTGGTGCTTATGCCAAAAACAGCTTTGGTAATATATATACAGCTGTTGGTGTATTTGTTCTTGGACGGATGTTACGTGAAGCATGGGGATCTGAAGCAGCAAAAAAGCAAGCAGAGTTCAATGATTTCCTAGAGAGGAACCATATGTGCATATCAATGGAGCTCGTAACTGCAGTCCTAGGAGACCATGGACAGCGTCCAAATGAAGATTTTGTTGTGGTGACAGCAGTCACAGAGCTGGGCAATGGGAAGCCAAAGTTCTACTCAACCCCTGAGGTTATTGCTTTCTGTCGGAAATGGCGCCTTCCGACAAATCATGTATGGCTGTTCTCAACAAGGAAAGCAGTGACATCGTTTTTTGCTGCCTTTGATGCCTTGTGTGAAGAAGGAACTGCAACAACTGTGTGCAGAGCTCTTGATGAAGTTGCAGATATATCTATACCAGGTTCAAAAGATCATATCAAGGAGCAGGGTGAAATCTTAGAGGGTATTGTTGCTCGTATTGTAAGCCATGAGAGCTCAAAGCATATGGTGGAAGTCTTAAAAAATTTCCCTCCTCCCCCAATGGAAGGAGCTGGTCATGATTTGGGACCAAGCCTAAGGGAGATTTGTGCTGCAAATAGGTCGGATGAAACACAGCAAATAAAAGCTCTTCTCAAGGGTGTTGGCTCCTCTTTTTGCCCCGACCATTCAGACTGGCTTGGGGGAGCTGGTGATGCCCAATCTAGAAATGCAGATAAAGCAGTGGTTTCAAAATTTTTACAATCTCACCCTGCTGATTTTTCTACCACCAAATTGCAGGAAGTGATTCGTTTGATGAGAGAAAAGCGTTTTCCTGCTGCCTTTAAATGCTACCATAACTACCACAAACAGGATTCCATGTCCAATGACAACCTTTTCTACAAAATGGTTATTCATGTCCATAGTGACTCTGCATTTCGGCGTTATCAGAAAGAGATGAGGTCGAAGCCAGGACTTTGGCCTTTATATCGAGGTTTTTTCGTTGACATTAATTTGTTCAAGGCAAGCAATGAGAGAGCTGCTGAGATTGCAAAAAACAAAAGTACTGTTGTGGACGATGATGGTGGCACTGGTATGTCCGGAAAACATGGATTGGCTGGTGAAGACGCAAACTTAATGATCAAATTGAAATTTCTTACCTATAAGTTGCGTACCTTTTTGATCCGCAATGGTTTGTCAATTCTTTTTAAAGAAGGTCCGGCTGCTTATAAAGCCTATTACTTGAGGCAAATGAAAATATGGGGCACTTCAGCAGGAAAGCAGAGGGAGCTCAGCAAAATGCTTGATGAATGGGCTGTGTACATACGACGGAAATGTGGAAACAAACAGCTGTCGTCATCAGTGTACCTCAGTGAGGCTGAGCCTTTCCTTGAACAATATGCTAAACGGAGCCCACAGAATCAGGCTCTTATAGGATCTGCTGGAAACTTAGTAAGGGCTGAAGACTTCTTGGCCATAGTTGAGGGAGGAAGAGATGAAGAGGGTGATCTTGAGAAGGAGTTTGTACCATCAAGCCCAAGTGCCTCAACCGGGGACATCATTCCAAAGGCTGAGGGTCTGATTGTATTCTTTCCTGGACTACCTGGTTCTGCTAAGTCAGCACTGTGCAAGGAACTACTCAAAGCCCCTGGAGGATTTGGGGATGATAGGCCAGTTCACACTCTTATGGGTGACCTTTTTAAAGGAAGATATTGGCAGAAGGTCGCTGATGAGCGGAAGAAAAAACCGTATTCTATAATGCTTGCAGACAAGAATGCACCAAATGAAGAAGTGTGGAGACAGATTGAAGACATGTGCCACAGAACCAGGGCCAATGCAGTTCCAGTTGTTCCTGATTCTGAAGGCACTGATTCAAATCCGTTTTCTCTTGACGCATTAGCGGTTTTCGTGTATCGTGTGCTTCAACGTTCTAATCATCCGGGAAACCTCGACAAGAATTCTCCAAATGCTGGCTATGTGCTGTTAATGTTCTATCACCTTTATGAGGGCAAAAGTCGTAGCGAGTTTGATGGTGAATTAGTTGAGCGTTTTGGTTCGCTTGTCAAGATACCACTGCTGAAATCTGATAGGAATCCATTACCTGATCCTGTGAAATCAACTCTTGAGGAGGGAATAAATTTATACAAGCTTCACACTAAGAAACATGGAAGAATGGAGTCTACCAAGGGAACCTATGCAAATGAGTGGGCTAAATGGGAGAAACAGTTGCGAGATGTTTTATTTGGCAATTCAGAGTATCTTAATTCTGTTCAGGTTCCTTTTGAGTCTGCTGTTAAGGAAGTATCAGAAGAGCTAAGTAAGATTGCAAAAGGTGAGTATGAGACTCCAGAGTACAGAACTCCAGATTCTGGGAAGAGGAAGATCGGGGCCATTGTTTTTGCTGCCATTAGCCTGCCTATTACCGAAATCAAAGGTTTGCTTGATAATTTGGCTGGGACAGATAGTAAAGCCGCAGCTTTCCTCAAAGACAAGAATTTGGAGAACCAGATTAATGAGGCCCATGTTACTCTTGCACACAAGAGAAGTCACGGTGTTACTGCAGTGGCTAATTACGGCATCTTCCTACACAAACAGGTCCCTGTGGATATAACTGCACTGCTCTTCACGGATAAAATTGCTGCGTTTGAAGCATGCCCTGGCTCTGTTGAAGGTGAAAGAGTCGTCTCCAAAAACGAGTGGCCACATGTTACCTTATGGACTGCAGAGGGTGTTGCAGCTAAGGAGGCCAACATGTTACATAATTTGCATTTAGAAGGGAAGGCTACTCGTATTGCAATTGACCCACCTGCCACCATTCAGGGGCCGCTGGAGTTTTACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000278 GO:0000281 GO:0000394 GO:0000910 GO:0003006 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003824 GO:0003972 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006388 GO:0006396 GO:0006399 GO:0006725 GO:0006807 GO:0007049 GO:0007275 GO:0008033 GO:0008150 GO:0008152 GO:0008356 GO:0008380 GO:0008452 GO:0009790 GO:0009791 GO:0009793 GO:0009966 GO:0009987 GO:0010069 GO:0010070 GO:0010154 GO:0010467 GO:0010646 GO:0010928 GO:0016070 GO:0016874 GO:0016886 GO:0022402 GO:0022414 GO:0023051 GO:0032501 GO:0032502 GO:0034470 GO:0034641 GO:0034660 GO:0042245 GO:0043170 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0048316 GO:0048583 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0051301 GO:0061458 GO:0061640 GO:0065007 GO:0071704 GO:0090304 GO:0097159 GO:0140098 GO:1901360 GO:1901363 GO:1903047

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

tRNA_lig_CPD

Protein Analysis

952

Amino Acids

105.86

Weight (kDa)

7.36

Isoelectric Point (pI)

35.8

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
tRNA_lig_CPD	PF08302	782 - 933	9.9e-06	Fungal tRNA ligase phosphodiesterase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003227)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G07910 AT1G07910
fragaria_vesca	FvH4_3g33360 FvH4_3g33360 FvH4_3g33360 FvH4_3g33360 FvH4_3g33360 FvH4_3g33360 FvH4_3g33360 FvH4_3g33360 FvH4_4g02320
malus_domestica	MD03G1112400.v1.1 MD11G1129800.v1.1
prunus_persica	Prupe.6G094700_v2.0.a1
pyrus_communis	pycom11g10750 pycom11g10760
rosa_chinensis	RchiOBHm_Chr4g0389641 RchiOBHm_Chr5g0060751
rosa_laevigata	RLG00000009964 RLG00000035390
rosa_multiflora	Rmu_co8520825.1_g000001 Rmu_sc0006568.1_g000004 Rmu_sc0007419.1_g000006
rosa_roxburghii	Rroxscaffold_1G00019960 Rroxscaffold_5G00335630
rosa_rugosa	Rorug03G0324600 Rorug05G0333400
rosa_samantha	Rh4AG029200 Rh4BG022400 Rh4CG031200 Rh4DG022900 Rh5AG396400 Rh5BG408600 Rh5CG433200 Rh5DG423800
rosa_wichuraiana	Rw4G002180 Rw5G037370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1248
AarI	CACCTGC	1 cut(s)	2833
Acc36I	ACCTGC	1 cut(s)	2833
AccB1I	GGYRCC	1 cut(s)	318
AccB7I	CCANNNNNTGG	2 cut(s)	1988, 2387
AccBSI	CCGCTC	1 cut(s)	1753
AccI	GTMKAC	1 cut(s)	2198
AccIII	TCCGGA	1 cut(s)	1118
AciI	CCGC	5 cut(s)	1204, 1753, 1919, 2490, 2843
AclI	AACGTT	1 cut(s)	1945
AclWI	GGATC	4 cut(s)	115, 1195, 1462, 2117
AcoI	YGGCCR	2 cut(s)	1491, 2717
AcsI	RAATTY	6 cut(s)	565, 773, 1169, 1975, 2155, 2512
AcuI	CTGAAG	4 cut(s)	132, 1272, 1500, 1899
AcyI	GRCGYC	1 cut(s)	319
AfaI	GTAC	7 cut(s)	5, 1084, 1192, 1340, 1385, 1545, 2372
AfiI	CCNNNNNNNGG	8 cut(s)	587, 889, 1393, 1569, 1988, 2023, 2387, 2838
AflIII	ACRYGT	3 cut(s)	1830, 2722, 2769
AjnI	CCWGG	7 cut(s)	460, 988, 1612, 1621, 1666, 1844, 2674
Alw21I	GWGCWC	4 cut(s)	183, 433, 539, 1311
Alw26I	GTCTC	4 cut(s)	195, 1810, 2354, 2707
AlwI	GGATC	4 cut(s)	115, 1195, 1462, 2117
AlwNI	CAGNNNCTG	1 cut(s)	2387
Aor13HI	TCCGGA	1 cut(s)	1118
AoxI	GGCC	9 cut(s)	998, 1491, 1688, 1848, 2406, 2535, 2717, 2763, 2840
ApoI	RAATTY	6 cut(s)	565, 773, 1169, 1975, 2155, 2512
AseI	ATTAAT	2 cut(s)	1029, 2529
Asp700I	GAANNNNTTC	1 cut(s)	825
AspA2I	CCTAGG	1 cut(s)	196
AspLEI	GCGC	1 cut(s)	321
AspS9I	GGNCC	7 cut(s)	608, 1235, 1848, 2406, 2536, 2614, 2840
AsuC2I	CCSGG	2 cut(s)	1570, 1959
AvaII	GGWCC	3 cut(s)	608, 1235, 2614
AvrII	CCTAGG	1 cut(s)	196
AxyI	CCTNAGG	2 cut(s)	291, 617
BaeGI	GKGCMC	1 cut(s)	1286
BalI	TGGCCA	2 cut(s)	1493, 2719
BanI	GGYRCC	1 cut(s)	318
BanII	GRGCYC	5 cut(s)	183, 433, 539, 1311, 1433
BbsI	GAAGAC	3 cut(s)	1149, 1488, 1833
Bbv12I	GWGCWC	4 cut(s)	183, 433, 539, 1311
BbvCI	CCTCAGC	1 cut(s)	1590
BccI	CCATC	3 cut(s)	1094, 1555, 2042
BceAI	ACGGC	1 cut(s)	2608
BcgI	CGANNNNNNTGC	4 cut(s)	351, 385, 624, 658
BciT130I	CCWGG	7 cut(s)	462, 990, 1614, 1623, 1668, 1846, 2676
BclI	TGATCA	1 cut(s)	1158
BcnI	CCSGG	2 cut(s)	1570, 1959
BcoDI	GTCTC	4 cut(s)	195, 1810, 2354, 2707
BfaI	CTAG	3 cut(s)	149, 197, 744
BfmI	CTRYAG	3 cut(s)	189, 2577, 2739
BfoI	RGCGCY	1 cut(s)	322
BfuAI	ACCTGC	1 cut(s)	2833
BlnI	CCTAGG	1 cut(s)	196
BlpI	GCTNAGC	2 cut(s)	1310, 1398
BmcAI	AGTACT	1 cut(s)	1084
Bme1390I	CCNGG	9 cut(s)	462, 990, 1570, 1614, 1623, 1668, 1846, 1959, 2676
Bme18I	GGWCC	3 cut(s)	608, 1235, 2614
BmgT120I	GGNCC	7 cut(s)	608, 1235, 1848, 2406, 2536, 2614, 2840
BmrFI	CCNGG	9 cut(s)	462, 990, 1570, 1614, 1623, 1668, 1846, 1959, 2676
BmsI	GCATC	3 cut(s)	379, 724, 2604
BoxI	GACNNNNGTC	1 cut(s)	245
BpiI	GAAGAC	3 cut(s)	1149, 1488, 1833
BpmI	CTGGAG	3 cut(s)	1689, 2349, 2364
Bpu10I	CCTNAGC	2 cut(s)	1590, 2757
Bpu1102I	GCTNAGC	2 cut(s)	1310, 1398
BpuEI	CTTGAG	4 cut(s)	659, 1282, 1550, 2162
BpuMI	CCSGG	2 cut(s)	1570, 1959
BsaAI	YACGTR	1 cut(s)	95
BsaBI	GATNNNNATC	2 cut(s)	1893, 2109
BsaHI	GRCGYC	1 cut(s)	319
BsaI	GGTCTC	1 cut(s)	195
BsaJI	CCNNGG	7 cut(s)	196, 205, 1569, 1666, 1845, 2202, 2674
BsaWI	WCCGGW	1 cut(s)	1118
BsaXI	ACNNNNNCTCC	2 cut(s)	2228, 2258
Bsc4I	CCNNNNNNNGG	8 cut(s)	587, 889, 1393, 1569, 1988, 2023, 2387, 2838
Bse1I	ACTGG	4 cut(s)	719, 1114, 1691, 1862
Bse21I	CCTNAGG	2 cut(s)	291, 617
Bse3DI	GCAATG	3 cut(s)	268, 1054, 1213
Bse8I	GATNNNNATC	2 cut(s)	1893, 2109
BseAI	TCCGGA	1 cut(s)	1118
BseBI	CCWGG	7 cut(s)	462, 990, 1614, 1623, 1668, 1846, 2676
BseDI	CCNNGG	7 cut(s)	196, 205, 1569, 1666, 1845, 2202, 2674
BseGI	GGATG	4 cut(s)	93, 652, 1687, 1954
BseJI	GATNNNNATC	2 cut(s)	1893, 2109
BseLI	CCNNNNNNNGG	8 cut(s)	587, 889, 1393, 1569, 1988, 2023, 2387, 2838
BseMI	GCAATG	3 cut(s)	268, 1054, 1213
BseMII	CTCAG	6 cut(s)	282, 1053, 1324, 1389, 1402, 1581
BseNI	ACTGG	4 cut(s)	719, 1114, 1691, 1862
BseRI	GAGGAG	3 cut(s)	564, 679, 2159
BseSI	GKGCMC	1 cut(s)	1286
BseYI	CCCAGC	2 cut(s)	256, 2471
BsgI	GTGCAG	2 cut(s)	445, 2616
BshFI	GGCC	9 cut(s)	1000, 1493, 1690, 1850, 2408, 2537, 2719, 2765, 2842
BshNI	GGYRCC	1 cut(s)	318
BsiHKAI	GWGCWC	4 cut(s)	183, 433, 539, 1311
BsiSI	CCGG	4 cut(s)	1119, 1238, 1569, 1958
BslFI	GGGAC	4 cut(s)	621, 1586, 2488, 2600
BslI	CCNNNNNNNGG	8 cut(s)	587, 889, 1393, 1569, 1988, 2023, 2387, 2838
BsmAI	GTCTC	4 cut(s)	195, 1810, 2354, 2707
BsmBI	CGTCTC	1 cut(s)	2707
BsmFI	GGGAC	4 cut(s)	621, 1586, 2488, 2600
BsmI	GAATGC	1 cut(s)	1798
BsnI	GGCC	9 cut(s)	1000, 1493, 1690, 1850, 2408, 2537, 2719, 2765, 2842
Bso31I	GGTCTC	1 cut(s)	195
Bsp1286I	GDGCHC	6 cut(s)	183, 433, 539, 1286, 1311, 1433
Bsp13I	TCCGGA	1 cut(s)	1118
Bsp1407I	TGTACA	1 cut(s)	1338
Bsp143I	GATC	8 cut(s)	107, 472, 1158, 1200, 1454, 1525, 2122, 2400
Bsp1720I	GCTNAGC	2 cut(s)	1310, 1398
Bsp19I	CCATGG	1 cut(s)	205
BspACI	CCGC	5 cut(s)	1204, 1753, 1919, 2490, 2843
BspANI	GGCC	9 cut(s)	1000, 1493, 1690, 1850, 2408, 2537, 2719, 2765, 2842
BspCNI	CTCAG	6 cut(s)	283, 1054, 1323, 1390, 1401, 1582
BspEI	TCCGGA	1 cut(s)	1118
BspHI	TCATGA	1 cut(s)	598
BspMAI	CTGCAG	3 cut(s)	193, 2581, 2743
BspMI	ACCTGC	1 cut(s)	2833
BspPI	GGATC	4 cut(s)	115, 1195, 1462, 2117
BspQI	GCTCTTC	3 cut(s)	675, 2322, 2645
BspT107I	GGYRCC	1 cut(s)	318
BspTNI	GGTCTC	1 cut(s)	195
BsrBI	CCGCTC	1 cut(s)	1753
BsrDI	GCAATG	3 cut(s)	268, 1054, 1213
BsrGI	TGTACA	1 cut(s)	1338
BsrI	ACTGG	4 cut(s)	719, 1114, 1691, 1862
BssECI	CCNNGG	7 cut(s)	196, 205, 1569, 1666, 1845, 2202, 2674
BssMI	GATC	8 cut(s)	107, 472, 1158, 1200, 1454, 1525, 2122, 2400
BssNI	GRCGYC	1 cut(s)	319
BssT1I	CCWWGG	3 cut(s)	196, 205, 2202
Bst2UI	CCWGG	7 cut(s)	462, 990, 1614, 1623, 1668, 1846, 2676
Bst4CI	ACNGT	6 cut(s)	421, 1087, 1644, 1767, 2244, 2570
Bst6I	CTCTTC	6 cut(s)	675, 1504, 1512, 2322, 2387, 2645
BstACI	GRCGYC	1 cut(s)	319
BstAUI	TGTACA	1 cut(s)	1338
BstBAI	YACGTR	1 cut(s)	95
BstC8I	GCNNGC	6 cut(s)	129, 1045, 1782, 1990, 2432, 2671
BstDSI	CCRYGG	1 cut(s)	205
BstEII	GGTNACC	1 cut(s)	1709
BstENI	CCTNNNNNAGG	2 cut(s)	1391, 2021
BstF5I	GGATG	4 cut(s)	93, 652, 1687, 1954
BstH2I	RGCGCY	1 cut(s)	322
BstHHI	GCGC	1 cut(s)	321
BstKTI	GATC	8 cut(s)	110, 475, 1161, 1203, 1457, 1528, 2125, 2403
BstMAI	GTCTC	4 cut(s)	195, 1810, 2354, 2707
BstMBI	GATC	8 cut(s)	107, 472, 1158, 1200, 1454, 1525, 2122, 2400
BstNI	CCWGG	7 cut(s)	462, 990, 1614, 1623, 1668, 1846, 2676
BstNSI	RCATGY	4 cut(s)	1834, 2673, 2726, 2773
BstPAI	GACNNNNGTC	1 cut(s)	245
BstPI	GGTNACC	1 cut(s)	1709
BstSCI	CCNGG	9 cut(s)	460, 988, 1568, 1612, 1621, 1666, 1844, 1957, 2674
BstSFI	CTRYAG	3 cut(s)	189, 2577, 2739
BstSLI	GKGCMC	1 cut(s)	1286
BstV2I	GAAGAC	3 cut(s)	1149, 1488, 1833
BstX2I	RGATCY	2 cut(s)	107, 1454
BstXI	CCANNNNNNTGG	1 cut(s)	996
BstYI	RGATCY	2 cut(s)	107, 1454
Bsu36I	CCTNAGG	2 cut(s)	291, 617
BsuRI	GGCC	9 cut(s)	1000, 1493, 1690, 1850, 2408, 2537, 2719, 2765, 2842
BtgI	CCRYGG	1 cut(s)	205
BtsCI	GGATG	4 cut(s)	93, 652, 1687, 1954
BtsI	GCAGTG	5 cut(s)	369, 768, 2090, 2586, 2633
BveI	ACCTGC	1 cut(s)	2833
Cac8I	GCNNGC	6 cut(s)	129, 1045, 1782, 1990, 2432, 2671
CaiI	CAGNNNCTG	1 cut(s)	2387
CciI	TCATGA	1 cut(s)	598
CfoI	GCGC	1 cut(s)	321
Cfr13I	GGNCC	7 cut(s)	608, 1235, 1848, 2406, 2536, 2614, 2840
CseI	GACGC	3 cut(s)	203, 1154, 1919
CsiI	ACCWGGT	2 cut(s)	460, 1621
Csp6I	GTAC	7 cut(s)	4, 1083, 1191, 1339, 1384, 1544, 2371
CviQI	GTAC	7 cut(s)	4, 1083, 1191, 1339, 1384, 1544, 2371
DinI	GGCGCC	1 cut(s)	320
DpnI	GATC	8 cut(s)	109, 474, 1160, 1202, 1456, 1527, 2124, 2402
DpnII	GATC	8 cut(s)	107, 472, 1158, 1200, 1454, 1525, 2122, 2400
DraI	TTTAAA	3 cut(s)	865, 1228, 1720
EaeI	YGGCCR	2 cut(s)	1491, 2717
Eam1104I	CTCTTC	6 cut(s)	675, 1504, 1512, 2322, 2387, 2645
EarI	CTCTTC	6 cut(s)	675, 1504, 1512, 2322, 2387, 2645
Ecl136II	GAGCTC	4 cut(s)	181, 431, 537, 1309
Eco130I	CCWWGG	3 cut(s)	196, 205, 2202
Eco24I	GRGCYC	5 cut(s)	183, 433, 539, 1311, 1433
Eco31I	GGTCTC	1 cut(s)	195
Eco47I	GGWCC	3 cut(s)	608, 1235, 2614
Eco53kI	GAGCTC	4 cut(s)	181, 431, 537, 1309
Eco57I	CTGAAG	4 cut(s)	132, 1272, 1500, 1899
Eco81I	CCTNAGG	2 cut(s)	291, 617
Eco91I	GGTNACC	1 cut(s)	1709
EcoICRI	GAGCTC	4 cut(s)	181, 431, 537, 1309
EcoNI	CCTNNNNNAGG	2 cut(s)	1391, 2021
EcoO109I	RGGNCCY	1 cut(s)	2614
EcoO65I	GGTNACC	1 cut(s)	1709
EcoRI	GAATTC	1 cut(s)	1975
EcoRII	CCWGG	7 cut(s)	460, 988, 1612, 1621, 1666, 1844, 2674
EcoT14I	CCWWGG	3 cut(s)	196, 205, 2202
EcoT38I	GRGCYC	5 cut(s)	183, 433, 539, 1311, 1433
EgeI	GGCGCC	1 cut(s)	320
EheI	GGCGCC	1 cut(s)	320
ErhI	CCWWGG	3 cut(s)	196, 205, 2202
Esp3I	CGTCTC	1 cut(s)	2707
FalI	AAGNNNNNCTT	2 cut(s)	2442, 2474
FaqI	GGGAC	4 cut(s)	621, 1586, 2488, 2600
FauNDI	CATATG	2 cut(s)	162, 546
FbaI	TGATCA	1 cut(s)	1158
FblI	GTMKAC	1 cut(s)	2198
FokI	GGATG	4 cut(s)	100, 659, 1694, 1941
FriOI	GRGCYC	5 cut(s)	183, 433, 539, 1311, 1433
FspBI	CTAG	3 cut(s)	149, 197, 744
GlaI	GCGC	1 cut(s)	320
GsaI	CCCAGC	2 cut(s)	260, 2475
GsuI	CTGGAG	3 cut(s)	1689, 2349, 2364
HaeII	RGCGCY	1 cut(s)	322
HaeIII	GGCC	9 cut(s)	1000, 1493, 1690, 1850, 2408, 2537, 2719, 2765, 2842
HapII	CCGG	4 cut(s)	1119, 1238, 1569, 1958
HgaI	GACGC	3 cut(s)	203, 1154, 1919
HhaI	GCGC	1 cut(s)	321
Hin1I	GRCGYC	1 cut(s)	319
Hin6I	GCGC	1 cut(s)	319
HinP1I	GCGC	1 cut(s)	319
HincII	GTYRAC	1 cut(s)	1024
HindII	GTYRAC	1 cut(s)	1024
HindIII	AAGCTT	1 cut(s)	2165
HpaII	CCGG	4 cut(s)	1119, 1238, 1569, 1958
Hpy166II	GTNNAC	6 cut(s)	1024, 1093, 1339, 1384, 1696, 2199
Hpy8I	GTNNAC	6 cut(s)	1024, 1093, 1339, 1384, 1696, 2199
Hpy99I	CGWCG	1 cut(s)	1350
HpyCH4III	ACNGT	6 cut(s)	421, 1087, 1644, 1767, 2244, 2570
HpyCH4IV	ACGT	2 cut(s)	94, 1945
HpySE526I	ACGT	2 cut(s)	94, 1945
Hsp92I	GRCGYC	1 cut(s)	319
HspAI	GCGC	1 cut(s)	319
KasI	GGCGCC	1 cut(s)	318
Kpn2I	TCCGGA	1 cut(s)	1118
Ksp22I	TGATCA	1 cut(s)	1158
Kzo9I	GATC	8 cut(s)	107, 472, 1158, 1200, 1454, 1525, 2122, 2400
LguI	GCTCTTC	3 cut(s)	675, 2322, 2645
LmnI	GCTCC	7 cut(s)	178, 484, 590, 692, 725, 1306, 1428
LweI	GCATC	3 cut(s)	379, 724, 2604
MabI	ACCWGGT	2 cut(s)	460, 1621
MaeI	CTAG	3 cut(s)	149, 197, 744
MaeII	ACGT	2 cut(s)	94, 1945
MalI	GATC	8 cut(s)	109, 474, 1160, 1202, 1456, 1527, 2124, 2402
MbiI	CCGCTC	1 cut(s)	1753
MboI	GATC	8 cut(s)	107, 472, 1158, 1200, 1454, 1525, 2122, 2400
MfeI	CAATTG	1 cut(s)	2814
MflI	RGATCY	2 cut(s)	107, 1454
MhlI	GDGCHC	6 cut(s)	183, 433, 539, 1286, 1311, 1433
MlsI	TGGCCA	2 cut(s)	1493, 2719
MluNI	TGGCCA	2 cut(s)	1493, 2719
Mly113I	GGCGCC	1 cut(s)	319
MlyI	GAGTC	5 cut(s)	941, 2204, 2312, 2356, 2706
MmeI	TCCRAC	3 cut(s)	290, 350, 624
Mox20I	TGGCCA	2 cut(s)	1493, 2719
MroI	TCCGGA	1 cut(s)	1118
MroXI	GAANNNNTTC	1 cut(s)	825
MscI	TGGCCA	2 cut(s)	1493, 2719
MslI	CAYNNNNRTG	4 cut(s)	173, 1112, 1703, 2019
Msp20I	TGGCCA	2 cut(s)	1493, 2719
MspA1I	CMGCKG	3 cut(s)	62, 1369, 2845
MspI	CCGG	4 cut(s)	1119, 1238, 1569, 1958
MspR9I	CCNGG	9 cut(s)	462, 990, 1570, 1614, 1623, 1668, 1846, 1959, 2676
MunI	CAATTG	1 cut(s)	2814
Mva1269I	GAATGC	1 cut(s)	1798
MvaI	CCWGG	7 cut(s)	462, 990, 1614, 1623, 1668, 1846, 2676
NarI	GGCGCC	1 cut(s)	319
NciI	CCSGG	2 cut(s)	1570, 1959
NcoI	CCATGG	1 cut(s)	205
NdeI	CATATG	2 cut(s)	162, 546
NdeII	GATC	8 cut(s)	107, 472, 1158, 1200, 1454, 1525, 2122, 2400
NmuCI	GTSAC	6 cut(s)	238, 247, 364, 944, 1709, 2564
NspI	RCATGY	4 cut(s)	1834, 2673, 2726, 2773
PaeI	GCATGC	1 cut(s)	2673
PagI	TCATGA	1 cut(s)	598
PaqCI	CACCTGC	1 cut(s)	2833
PciI	ACATGT	3 cut(s)	1830, 2722, 2769
PciSI	GCTCTTC	3 cut(s)	675, 2322, 2645
PcsI	WCGNNNNNNNCGW	1 cut(s)	91
PctI	GAATGC	1 cut(s)	1798
PdmI	GAANNNNTTC	1 cut(s)	825
PfeI	GAWTC	7 cut(s)	826, 893, 1438, 1874, 1889, 2110, 2384
PflFI	GACNNNGTC	1 cut(s)	213
PflMI	CCANNNNNTGG	2 cut(s)	1988, 2387
PfoI	TCCNGGA	2 cut(s)	1612, 1957
PleI	GAGTC	5 cut(s)	941, 2203, 2311, 2356, 2705
PluTI	GGCGCC	1 cut(s)	322
PpsI	GAGTC	5 cut(s)	941, 2203, 2311, 2356, 2705
Ppu21I	YACGTR	1 cut(s)	95
PpuMI	RGGWCCY	1 cut(s)	2614
PscI	ACATGT	3 cut(s)	1830, 2722, 2769
PshAI	GACNNNNGTC	1 cut(s)	245
PshBI	ATTAAT	2 cut(s)	1029, 2529
PsiI	TTATAA	1 cut(s)	1248
Psp124BI	GAGCTC	4 cut(s)	183, 433, 539, 1311
Psp1406I	AACGTT	1 cut(s)	1945
Psp5II	RGGWCCY	1 cut(s)	2614
Psp6I	CCWGG	7 cut(s)	460, 988, 1612, 1621, 1666, 1844, 2674
PspEI	GGTNACC	1 cut(s)	1709
PspFI	CCCAGC	2 cut(s)	256, 2471
PspGI	CCWGG	7 cut(s)	460, 988, 1612, 1621, 1666, 1844, 2674
PspPI	GGNCC	7 cut(s)	608, 1235, 1848, 2406, 2536, 2614, 2840
PspPPI	RGGWCCY	1 cut(s)	2614
PstI	CTGCAG	3 cut(s)	193, 2581, 2743
PstNI	CAGNNNCTG	1 cut(s)	2387
PsuI	RGATCY	2 cut(s)	107, 1454
PsyI	GACNNNGTC	1 cut(s)	213
PvuII	CAGCTG	2 cut(s)	62, 1369
RsaI	GTAC	7 cut(s)	5, 1084, 1192, 1340, 1385, 1545, 2372
RsaNI	GTAC	7 cut(s)	4, 1083, 1191, 1339, 1384, 1544, 2371
RseI	CAYNNNNRTG	4 cut(s)	173, 1112, 1703, 2019
SacI	GAGCTC	4 cut(s)	183, 433, 539, 1311
SapI	GCTCTTC	3 cut(s)	675, 2322, 2645
Sau3AI	GATC	8 cut(s)	107, 472, 1158, 1200, 1454, 1525, 2122, 2400
Sau96I	GGNCC	7 cut(s)	608, 1235, 1848, 2406, 2536, 2614, 2840
ScaI	AGTACT	1 cut(s)	1084
SchI	GAGTC	5 cut(s)	941, 2204, 2312, 2356, 2706
ScrFI	CCNGG	9 cut(s)	462, 990, 1570, 1614, 1623, 1668, 1846, 1959, 2676
SduI	GDGCHC	6 cut(s)	183, 433, 539, 1286, 1311, 1433
SexAI	ACCWGGT	2 cut(s)	460, 1621
SfaNI	GCATC	3 cut(s)	379, 724, 2604
SfcI	CTRYAG	3 cut(s)	189, 2577, 2739
SfoI	GGCGCC	1 cut(s)	320
SinI	GGWCC	3 cut(s)	608, 1235, 2614
SmiMI	CAYNNNNRTG	4 cut(s)	173, 1112, 1703, 2019
SmlI	CTYRAG	4 cut(s)	674, 1261, 1529, 2141
SmoI	CTYRAG	4 cut(s)	674, 1261, 1529, 2141
SphI	GCATGC	1 cut(s)	2673
SsiI	CCGC	5 cut(s)	1204, 1753, 1919, 2490, 2843
SspDI	GGCGCC	1 cut(s)	318
SspMI	CTAG	3 cut(s)	149, 197, 744
SstI	GAGCTC	4 cut(s)	183, 433, 539, 1311
StyD4I	CCNGG	9 cut(s)	460, 988, 1568, 1612, 1621, 1666, 1844, 1957, 2674
StyI	CCWWGG	3 cut(s)	196, 205, 2202
TaaI	ACNGT	6 cut(s)	421, 1087, 1644, 1767, 2244, 2570
TaiI	ACGT	2 cut(s)	97, 1948
TaqI	TCGA	3 cut(s)	983, 1009, 1968
TatI	WGTACW	3 cut(s)	1082, 1338, 2370
TauI	GCSGC	2 cut(s)	2492, 2845
TfiI	GAWTC	7 cut(s)	826, 893, 1438, 1874, 1889, 2110, 2384
TseFI	GTSAC	6 cut(s)	238, 247, 364, 944, 1709, 2564
Tsp45I	GTSAC	6 cut(s)	238, 247, 364, 944, 1709, 2564
TspDTI	ATGAA	8 cut(s)	237, 453, 663, 923, 1286, 1341, 1530, 1818
TspGWI	ACGGA	5 cut(s)	100, 1363, 1441, 1887, 2660
Tth111I	GACNNNGTC	1 cut(s)	213
Van91I	CCANNNNNTGG	2 cut(s)	1988, 2387
VpaK11BI	GGWCC	3 cut(s)	608, 1235, 2614
VspI	ATTAAT	2 cut(s)	1029, 2529
XagI	CCTNNNNNAGG	2 cut(s)	1391, 2021
XapI	RAATTY	6 cut(s)	565, 773, 1169, 1975, 2155, 2512
XbaI	TCTAGA	1 cut(s)	743
XceI	RCATGY	4 cut(s)	1834, 2673, 2726, 2773
XmaJI	CCTAGG	1 cut(s)	196
XmiI	GTMKAC	1 cut(s)	2198
XmnI	GAANNNNTTC	1 cut(s)	825
XspI	CTAG	3 cut(s)	149, 197, 744
ZrmI	AGTACT	1 cut(s)	1084

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.