Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006568.1

Orthogroup ID

OG0003227

Physical Location & Seq

Genomic Coordinates Reverse (-)

36304 .. 54022

Gene Structure 17719 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006568.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3996 bp

atgccgcctccgcacaggattctgttcgctctctctctcactcttcctccatcttcttcttcagccttcgtttccggaaccttcctcttccgtaggtcatctccttcctacataactccaccccgctctttctcctcctcctcctcctccatttctctctcgcattcaaccatgccgtacagccagcgaaagggtgggcaaacgtggagagagaaaacaaagactgacagctccgtcgataacagacttggtgaatggagtgctagtggaagcagtgggcaaactcaagcatcagttcagcccatacagtttgggaaggtacaagtaaatccggttccagtacaaggtcaaaaaggaatatggaagcctaaatcttatggaactgtcagtgggtctacggcagtagaagctgaagtacctgttgataaaagttcggttggattagagcaaaatggagttggactagcaactcctcagaaaagtagttctggtgcaagtaagttgttcaagggcaatctattggaaaattttactgtggacaactcaacatatgctcaggtgcaaatacgagctactttctatcctaaatttgaaaatgagaagtcagatcaggagattaggacaaggatgattgagatggtatctcagggcttggctaccttggaggtttcacttaaacactcggggtcactttttatgtacgctggtaatgagggtggtgcttgtgccaaaaacagctttgccttcgtttccggaaccttcctcttccgtaggtcatctccttcctacataactccaccccgctctttctcctcctcctcctcctccatttctctctcgcattcaaccatgccgtacagccagcgaaagggtgggcaaacgtggagagagaaaacaaagactgacagctccgtcgataacagacttggtgaatggagtgctagtggaagcagtgggcaaactcaagcatcagttcagcccatacagtttgggaaggtacaagtaaatccggttccagtacaaggtcaaaaaggaatatggaagcctaaatcttatggaactgtcagtgggtctacggcagtagaagctgaagtacctgttgataaaagttcggttggattagagcaaaatggagttggactagcaactcctcagaaaagtagttctggtgcaagtaagttgttcaagggcaatctattggaaaattttactgtggacaactcaacatatgctcaggtgcaaatacgagctactttctatcctaaatttgaaaatgagaagtcagatcaggaggtttcacttaaacactcggggtcactttttatgtacgctggtaatgagggtggtgcttatgccaaaaacagctttgttgtggtgacagcagtcacagagctgggcaatgggaagccaaagttctactcaacccctgaggttattgctttctgtcggaaatggcgccttccgacaaatcatgtatggctgttctcaacaaggaaagcagtgacatcgttttttgctgcctttgatgccttgtgtgaagaaggaactgcaacaactgtgtgcagagctcttgatgaagttgcagatatatctataccaggttcaaaagatcatatcaaggagcagggtgaaatcttagagggtattgttgctcgtattgtaagccatgagagctcaaagcatatggtggaagtcttaaaaaatttccctcctcccccaatggaaggagctggtcatgatttgggaccaagcctaagggagatttgtgctgcaaataggtcggatgaaacacagcaaataaaagctcttctcaagggtgttggctcctctttttgccccgaccattcagactggcttgggggagctggtgatgcccaatctagaaatgcagataaagcagtggtttcaaaatttttacaatctcaccctgctgatttttctaccaccaaattgcaggaagtgattcgtttgatgagagaaaagcgttttcctgctgcctttaaatgctaccataactaccacaaacaggattccatgtccaatgacaaccttttctacaaaatggttattcatgtccatagtgactctgcatttcggcgttatcagaaagagatgaggtcgaagccaggactttggcctttatatcgaggttttttcgttgacattaatttgttcaaggcaagcaatgagagagctgctgagattgcaaaaaacaaaagtactgttgtggacgatgatggtggcactggtatgtccggaaaacatggattggctgatgaagacgcaaacttaatgatcaaattgaaatttcttacctataagttgcgtacctttttgatccgcaatggtttgtcaattctttttaaagaaggtccggctgcttataaagcctattacttgaggcaaatgaaaatatggggcacttcagcaggaaagcagagggagctcagcaaaatgcttgatgaatgggctgtgtacatacgacggaaatgtggaaacaaacagctgtcgtcatcagtgtacctcagtgaggctgagcctttccttgaacaatatgctaaacggagcccacagaatcaggctcttataggatctgctggaaacttagtaagggctgaagacttcttggccatagttgagggaggaagagatgaagggggtgatcttgagaaggagtttgtaccatcaagcccaagtgcctcaaccggggacatcattccaaaggctgagggtctgattgtattctttcctggactacctggttctgctaagtcagcactgtgcaaggaactactcaaagcccctggaggatttggggatgataggccagttcacactcttatgggtgacctttttaaaggaagatattggcagaaggtcgctgatgagcggaagaaaaaaccgtattctataatgcttgcagacaagaatgcaccaaatgaagaagtgtggagacagattgaagacatgtgccacagaaccagggccaatgcagttccagttgttcctgattctgaaggcactgattcaaatccgttttctcttgacgcattagcggttttcgtgtatcgtgtgcttcaacgttctaatcatccgggaaacctcgacaagaattctccaaatgctggctatgtgctgttaatgttctatcacctttatgagggcaaaagtcgtagcgagtttgatggtgaattagttgagcgttttggttcgcttgtcaagataccactgctgaaatctgataggaatccattacctgatcctgtgaaatcaactcttgaggagggaataaatttatacaagcttcacactaagaaacatggaagaatggagtctaccaagggaacctatgcaaatgagtgggctaaatgggagaaacagttgcgagatgttttatttggcaattcagagtatcttaattctgttcaggttccttttgagtctgctgttaaggaagtatcagaagagctaagtaagattgcaaaaggtgagtatgagactccagagtacagaactccagattctgggaagaggaagatcggggccattgtttttgctgccattagcctgcctattaccgaaatcaaaggtttgcttgataatttggctgggaaagatagtaaagccgcagctttcctcaaagacaagaatttggagaaccagattaataaggcccatgttactcttgcacacaagagaagtcatggtgttactgcggtggctaattacggcatcttcctacacaaacaggtccctgtggatataactgcactgctcttcacggataaaatggctgcgtttgaagcatgccctggctctgttgaaggtgaaagagtcgtctccaaaaacgagtggccacatgttaccttatggactgcggagggtgttgcagctaaggaggccaacttgttacataatttgcatttagaagggaaggctactcgtattgcaattgacccacctgccaccattcaggggccgctggagttttactga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000278 GO:0000281 GO:0000394 GO:0000910 GO:0003006 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003824 GO:0003972 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006388 GO:0006396 GO:0006399 GO:0006725 GO:0006807 GO:0007049 GO:0007275 GO:0008033 GO:0008150 GO:0008152 GO:0008356 GO:0008380 GO:0008452 GO:0009790 GO:0009791 GO:0009793 GO:0009966 GO:0009987 GO:0010069 GO:0010070 GO:0010154 GO:0010467 GO:0010646 GO:0010928 GO:0016070 GO:0016874 GO:0016886 GO:0022402 GO:0022414 GO:0023051 GO:0032501 GO:0032502 GO:0034470 GO:0034641 GO:0034660 GO:0042245 GO:0043170 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0048316 GO:0048583 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0051301 GO:0061458 GO:0061640 GO:0065007 GO:0071704 GO:0090304 GO:0097159 GO:0140098 GO:1901360 GO:1901363 GO:1903047

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

tRNA_lig_CPD

Protein Analysis

1331

Amino Acids

146.35

Weight (kDa)

9.05

Isoelectric Point (pI)

38.48

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003227)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G07910 AT1G07910
fragaria_vesca	FvH4_3g33360 FvH4_3g33360 FvH4_3g33360 FvH4_3g33360 FvH4_3g33360 FvH4_3g33360 FvH4_3g33360 FvH4_3g33360 FvH4_4g02320
malus_domestica	MD03G1112400.v1.1 MD11G1129800.v1.1
prunus_persica	Prupe.6G094700_v2.0.a1
pyrus_communis	pycom11g10750 pycom11g10760
rosa_chinensis	RchiOBHm_Chr4g0389641 RchiOBHm_Chr5g0060751
rosa_laevigata	RLG00000009964 RLG00000035390
rosa_multiflora	Rmu_co8520825.1_g000001 Rmu_sc0006568.1_g000004 Rmu_sc0007419.1_g000006
rosa_roxburghii	Rroxscaffold_1G00019960 Rroxscaffold_5G00335630
rosa_rugosa	Rorug03G0324600 Rorug05G0333400
rosa_samantha	Rh4AG029200 Rh4BG022400 Rh4CG031200 Rh4DG022900 Rh5AG396400 Rh5BG408600 Rh5CG433200 Rh5DG423800
rosa_wichuraiana	Rw4G002180 Rw5G037370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	2385
AarI	CACCTGC	1 cut(s)	3970
AasI	GACNNNNNNGTC	2 cut(s)	233, 911
Acc36I	ACCTGC	1 cut(s)	3970
AccB1I	GGYRCC	1 cut(s)	1455
AccB7I	CCANNNNNTGG	2 cut(s)	3125, 3524
AccBSI	CCGCTC	3 cut(s)	126, 804, 2890
AccI	GTMKAC	3 cut(s)	395, 1073, 3335
AccIII	TCCGGA	3 cut(s)	74, 752, 2255
AclI	AACGTT	1 cut(s)	3082
AclWI	GGATC	3 cut(s)	2332, 2599, 3254
AcoI	YGGCCR	2 cut(s)	2628, 3854
AcuI	CTGAAG	6 cut(s)	45, 432, 1110, 2409, 2637, 3036
AcyI	GRCGYC	1 cut(s)	1456
AflIII	ACRYGT	2 cut(s)	2967, 3859
AjnI	CCWGG	7 cut(s)	1597, 2125, 2749, 2758, 2803, 2981, 3811
Alw21I	GWGCWC	3 cut(s)	1570, 1676, 2448
Alw26I	GTCTC	3 cut(s)	2947, 3491, 3844
AlwI	GGATC	3 cut(s)	2332, 2599, 3254
AlwNI	CAGNNNCTG	1 cut(s)	3524
Ama87I	CYCGRG	2 cut(s)	682, 1309
Aor13HI	TCCGGA	3 cut(s)	74, 752, 2255
AoxI	GGCC	9 cut(s)	2135, 2628, 2825, 2985, 3543, 3672, 3854, 3900, 3977
ApeKI	GCWGC	9 cut(s)	1517, 1769, 1994, 2195, 2378, 3557, 3629, 3794, 3890
AseI	ATTAAT	2 cut(s)	2166, 3666
Asp700I	GAANNNNTTC	1 cut(s)	1962
AspLEI	GCGC	1 cut(s)	1458
AspS9I	GGNCC	7 cut(s)	1745, 2372, 2985, 3543, 3673, 3751, 3977
AsuC2I	CCSGG	2 cut(s)	2707, 3096
AvaI	CYCGRG	2 cut(s)	682, 1309
AvaII	GGWCC	3 cut(s)	1745, 2372, 3751
AxyI	CCTNAGG	2 cut(s)	1428, 1754
BaeGI	GKGCMC	1 cut(s)	2423
BalI	TGGCCA	2 cut(s)	2630, 3856
BanI	GGYRCC	1 cut(s)	1455
BanII	GRGCYC	4 cut(s)	1570, 1676, 2448, 2570
BarI	GAAGNNNNNNTAC	4 cut(s)	399, 431, 1077, 1109
BbsI	GAAGAC	3 cut(s)	2286, 2625, 2970
Bbv12I	GWGCWC	3 cut(s)	1570, 1676, 2448
BbvCI	CCTCAGC	1 cut(s)	2727
BbvI	GCAGC	9 cut(s)	1504, 1756, 1981, 2182, 2365, 3544, 3641, 3781, 3902
BccI	CCATC	5 cut(s)	58, 631, 2231, 2692, 3179
BceAI	ACGGC	5 cut(s)	160, 414, 838, 1092, 3745
BcgI	CGANNNNNNTGC	4 cut(s)	1488, 1522, 1761, 1795
BciT130I	CCWGG	7 cut(s)	1599, 2127, 2751, 2760, 2805, 2983, 3813
BclI	TGATCA	1 cut(s)	2295
BcnI	CCSGG	2 cut(s)	2707, 3096
BcoDI	GTCTC	3 cut(s)	2947, 3491, 3844
BfaI	CTAG	5 cut(s)	264, 464, 942, 1142, 1881
BfoI	RGCGCY	1 cut(s)	1459
BfuAI	ACCTGC	1 cut(s)	3970
BlpI	GCTNAGC	2 cut(s)	2447, 2535
BmcAI	AGTACT	1 cut(s)	2221
Bme1390I	CCNGG	9 cut(s)	1599, 2127, 2707, 2751, 2760, 2805, 2983, 3096, 3813
Bme18I	GGWCC	3 cut(s)	1745, 2372, 3751
BmeT110I	CYCGRG	2 cut(s)	682, 1309
BmgT120I	GGNCC	7 cut(s)	1745, 2372, 2985, 3543, 3673, 3751, 3977
BmrFI	CCNGG	9 cut(s)	1599, 2127, 2707, 2751, 2760, 2805, 2983, 3096, 3813
BmsI	GCATC	5 cut(s)	299, 977, 1516, 1861, 3741
BoxI	GACNNNNGTC	1 cut(s)	1382
BpiI	GAAGAC	3 cut(s)	2286, 2625, 2970
BpmI	CTGGAG	3 cut(s)	2826, 3486, 3501
Bpu10I	CCTNAGC	4 cut(s)	555, 1233, 2727, 3894
Bpu1102I	GCTNAGC	2 cut(s)	2447, 2535
BpuEI	CTTGAG	6 cut(s)	270, 948, 1796, 2419, 2687, 3299
BpuMI	CCSGG	2 cut(s)	2707, 3096
BsaBI	GATNNNNATC	2 cut(s)	3030, 3246
BsaHI	GRCGYC	1 cut(s)	1456
BsaJI	CCNNGG	6 cut(s)	660, 2706, 2803, 2982, 3339, 3811
BsaWI	WCCGGW	5 cut(s)	74, 331, 752, 1009, 2255
BsaXI	ACNNNNNCTCC	8 cut(s)	31, 61, 250, 280, 928, 958, 3365, 3395
Bse1I	ACTGG	6 cut(s)	338, 1016, 1856, 2251, 2828, 2999
Bse21I	CCTNAGG	2 cut(s)	1428, 1754
Bse3DI	GCAATG	3 cut(s)	1405, 2191, 2350
Bse8I	GATNNNNATC	2 cut(s)	3030, 3246
BseAI	TCCGGA	3 cut(s)	74, 752, 2255
BseBI	CCWGG	7 cut(s)	1599, 2127, 2751, 2760, 2805, 2983, 3813
BseDI	CCNNGG	6 cut(s)	660, 2706, 2803, 2982, 3339, 3811
BseGI	GGATG	4 cut(s)	633, 1789, 2824, 3091
BseJI	GATNNNNATC	2 cut(s)	3030, 3246
BseMI	GCAATG	3 cut(s)	1405, 2191, 2350
BseNI	ACTGG	6 cut(s)	338, 1016, 1856, 2251, 2828, 2999
BseSI	GKGCMC	1 cut(s)	2423
BseXI	GCAGC	9 cut(s)	1504, 1756, 1981, 2182, 2365, 3544, 3641, 3781, 3902
BseYI	CCCAGC	2 cut(s)	1393, 3608
BsgI	GTGCAG	2 cut(s)	1582, 3753
BshFI	GGCC	9 cut(s)	2137, 2630, 2827, 2987, 3545, 3674, 3856, 3902, 3979
BshNI	GGYRCC	1 cut(s)	1455
BsiHKAI	GWGCWC	3 cut(s)	1570, 1676, 2448
BsiHKCI	CYCGRG	2 cut(s)	682, 1309
BsiSI	CCGG	8 cut(s)	75, 332, 753, 1010, 2256, 2375, 2706, 3095
BslFI	GGGAC	3 cut(s)	1758, 2723, 3737
BsmAI	GTCTC	3 cut(s)	2947, 3491, 3844
BsmBI	CGTCTC	1 cut(s)	3844
BsmFI	GGGAC	3 cut(s)	1758, 2723, 3737
BsmI	GAATGC	3 cut(s)	163, 841, 2935
BsnI	GGCC	9 cut(s)	2137, 2630, 2827, 2987, 3545, 3674, 3856, 3902, 3979
BsoBI	CYCGRG	2 cut(s)	682, 1309
Bsp1286I	GDGCHC	5 cut(s)	1570, 1676, 2423, 2448, 2570
Bsp13I	TCCGGA	3 cut(s)	74, 752, 2255
Bsp1407I	TGTACA	1 cut(s)	2475
Bsp143I	GATC	9 cut(s)	607, 1285, 1609, 2295, 2337, 2591, 2662, 3259, 3537
Bsp1720I	GCTNAGC	2 cut(s)	2447, 2535
BspANI	GGCC	9 cut(s)	2137, 2630, 2827, 2987, 3545, 3674, 3856, 3902, 3979
BspEI	TCCGGA	3 cut(s)	74, 752, 2255
BspHI	TCATGA	1 cut(s)	1735
BspMI	ACCTGC	1 cut(s)	3970
BspPI	GGATC	3 cut(s)	2332, 2599, 3254
BspQI	GCTCTTC	3 cut(s)	1812, 3459, 3782
BspT107I	GGYRCC	1 cut(s)	1455
BsrBI	CCGCTC	3 cut(s)	126, 804, 2890
BsrDI	GCAATG	3 cut(s)	1405, 2191, 2350
BsrGI	TGTACA	1 cut(s)	2475
BsrI	ACTGG	6 cut(s)	338, 1016, 1856, 2251, 2828, 2999
BssECI	CCNNGG	6 cut(s)	660, 2706, 2803, 2982, 3339, 3811
BssMI	GATC	9 cut(s)	607, 1285, 1609, 2295, 2337, 2591, 2662, 3259, 3537
BssNI	GRCGYC	1 cut(s)	1456
BssT1I	CCWWGG	2 cut(s)	660, 3339
Bst2UI	CCWGG	7 cut(s)	1599, 2127, 2751, 2760, 2805, 2983, 3813
Bst6I	CTCTTC	8 cut(s)	48, 92, 770, 1812, 2641, 3459, 3524, 3782
BstACI	GRCGYC	1 cut(s)	1456
BstAUI	TGTACA	1 cut(s)	2475
BstC8I	GCNNGC	7 cut(s)	185, 863, 2182, 2919, 3127, 3569, 3808
BstEII	GGTNACC	1 cut(s)	2846
BstENI	CCTNNNNNAGG	2 cut(s)	2528, 3158
BstF5I	GGATG	4 cut(s)	633, 1789, 2824, 3091
BstH2I	RGCGCY	1 cut(s)	1459
BstHHI	GCGC	1 cut(s)	1458
BstKTI	GATC	9 cut(s)	610, 1288, 1612, 2298, 2340, 2594, 2665, 3262, 3540
BstMAI	GTCTC	3 cut(s)	2947, 3491, 3844
BstMBI	GATC	9 cut(s)	607, 1285, 1609, 2295, 2337, 2591, 2662, 3259, 3537
BstNI	CCWGG	7 cut(s)	1599, 2127, 2751, 2760, 2805, 2983, 3813
BstNSI	RCATGY	3 cut(s)	2971, 3810, 3863
BstPAI	GACNNNNGTC	1 cut(s)	1382
BstPI	GGTNACC	1 cut(s)	2846
BstSCI	CCNGG	9 cut(s)	1597, 2125, 2705, 2749, 2758, 2803, 2981, 3094, 3811
BstSLI	GKGCMC	1 cut(s)	2423
BstV1I	GCAGC	9 cut(s)	1504, 1756, 1981, 2182, 2365, 3544, 3641, 3781, 3902
BstV2I	GAAGAC	3 cut(s)	2286, 2625, 2970
BstX2I	RGATCY	1 cut(s)	2591
BstXI	CCANNNNNNTGG	1 cut(s)	2133
BstYI	RGATCY	1 cut(s)	2591
Bsu36I	CCTNAGG	2 cut(s)	1428, 1754
BsuRI	GGCC	9 cut(s)	2137, 2630, 2827, 2987, 3545, 3674, 3856, 3902, 3979
BtsCI	GGATG	4 cut(s)	633, 1789, 2824, 3091
BtsI	GCAGTG	6 cut(s)	280, 958, 1506, 1905, 3227, 3770
BveI	ACCTGC	1 cut(s)	3970
Cac8I	GCNNGC	7 cut(s)	185, 863, 2182, 2919, 3127, 3569, 3808
CaiI	CAGNNNCTG	1 cut(s)	3524
CciI	TCATGA	1 cut(s)	1735
CfoI	GCGC	1 cut(s)	1458
Cfr13I	GGNCC	7 cut(s)	1745, 2372, 2985, 3543, 3673, 3751, 3977
CseI	GACGC	2 cut(s)	2291, 3056
CsiI	ACCWGGT	2 cut(s)	1597, 2758
DinI	GGCGCC	1 cut(s)	1457
DpnI	GATC	9 cut(s)	609, 1287, 1611, 2297, 2339, 2593, 2664, 3261, 3539
DpnII	GATC	9 cut(s)	607, 1285, 1609, 2295, 2337, 2591, 2662, 3259, 3537
DraI	TTTAAA	3 cut(s)	2002, 2365, 2857
DrdI	GACNNNNNNGTC	2 cut(s)	233, 911
DseDI	GACNNNNNNGTC	2 cut(s)	233, 911
EaeI	YGGCCR	2 cut(s)	2628, 3854
Eam1104I	CTCTTC	8 cut(s)	48, 92, 770, 1812, 2641, 3459, 3524, 3782
EarI	CTCTTC	8 cut(s)	48, 92, 770, 1812, 2641, 3459, 3524, 3782
Ecl136II	GAGCTC	3 cut(s)	1568, 1674, 2446
Eco130I	CCWWGG	2 cut(s)	660, 3339
Eco24I	GRGCYC	4 cut(s)	1570, 1676, 2448, 2570
Eco47I	GGWCC	3 cut(s)	1745, 2372, 3751
Eco53kI	GAGCTC	3 cut(s)	1568, 1674, 2446
Eco57I	CTGAAG	6 cut(s)	45, 432, 1110, 2409, 2637, 3036
Eco81I	CCTNAGG	2 cut(s)	1428, 1754
Eco88I	CYCGRG	2 cut(s)	682, 1309
Eco91I	GGTNACC	1 cut(s)	2846
EcoICRI	GAGCTC	3 cut(s)	1568, 1674, 2446
EcoNI	CCTNNNNNAGG	2 cut(s)	2528, 3158
EcoO109I	RGGNCCY	1 cut(s)	3751
EcoO65I	GGTNACC	1 cut(s)	2846
EcoRI	GAATTC	1 cut(s)	3112
EcoRII	CCWGG	7 cut(s)	1597, 2125, 2749, 2758, 2803, 2981, 3811
EcoT14I	CCWWGG	2 cut(s)	660, 3339
EcoT38I	GRGCYC	4 cut(s)	1570, 1676, 2448, 2570
EgeI	GGCGCC	1 cut(s)	1457
EheI	GGCGCC	1 cut(s)	1457
ErhI	CCWWGG	2 cut(s)	660, 3339
Esp3I	CGTCTC	1 cut(s)	3844
FalI	AAGNNNNNCTT	2 cut(s)	3579, 3611
FaqI	GGGAC	3 cut(s)	1758, 2723, 3737
FauI	CCCGC	2 cut(s)	131, 809
FauNDI	CATATG	3 cut(s)	550, 1228, 1683
FbaI	TGATCA	1 cut(s)	2295
FblI	GTMKAC	3 cut(s)	395, 1073, 3335
FokI	GGATG	4 cut(s)	640, 1796, 2831, 3078
FriOI	GRGCYC	4 cut(s)	1570, 1676, 2448, 2570
FspBI	CTAG	5 cut(s)	264, 464, 942, 1142, 1881
GlaI	GCGC	1 cut(s)	1457
GsaI	CCCAGC	2 cut(s)	1397, 3612
GsuI	CTGGAG	3 cut(s)	2826, 3486, 3501
HaeII	RGCGCY	1 cut(s)	1459
HaeIII	GGCC	9 cut(s)	2137, 2630, 2827, 2987, 3545, 3674, 3856, 3902, 3979
HapII	CCGG	8 cut(s)	75, 332, 753, 1010, 2256, 2375, 2706, 3095
HgaI	GACGC	2 cut(s)	2291, 3056
HhaI	GCGC	1 cut(s)	1458
Hin1I	GRCGYC	1 cut(s)	1456
Hin6I	GCGC	1 cut(s)	1456
HinP1I	GCGC	1 cut(s)	1456
HincII	GTYRAC	1 cut(s)	2161
HindII	GTYRAC	1 cut(s)	2161
HindIII	AAGCTT	1 cut(s)	3302
HpaII	CCGG	8 cut(s)	75, 332, 753, 1010, 2256, 2375, 2706, 3095
Hpy99I	CGWCG	3 cut(s)	239, 917, 2487
HpyCH4IV	ACGT	3 cut(s)	203, 881, 3082
HpySE526I	ACGT	3 cut(s)	203, 881, 3082
Hsp92I	GRCGYC	1 cut(s)	1456
HspAI	GCGC	1 cut(s)	1456
KasI	GGCGCC	1 cut(s)	1455
Kpn2I	TCCGGA	3 cut(s)	74, 752, 2255
Ksp22I	TGATCA	1 cut(s)	2295
Kzo9I	GATC	9 cut(s)	607, 1285, 1609, 2295, 2337, 2591, 2662, 3259, 3537
LguI	GCTCTTC	3 cut(s)	1812, 3459, 3782
LmnI	GCTCC	8 cut(s)	236, 914, 1621, 1727, 1829, 1862, 2443, 2565
Lsp1109I	GCAGC	9 cut(s)	1504, 1756, 1981, 2182, 2365, 3544, 3641, 3781, 3902
LweI	GCATC	5 cut(s)	299, 977, 1516, 1861, 3741
MabI	ACCWGGT	2 cut(s)	1597, 2758
MaeI	CTAG	5 cut(s)	264, 464, 942, 1142, 1881
MaeII	ACGT	3 cut(s)	203, 881, 3082
MalI	GATC	9 cut(s)	609, 1287, 1611, 2297, 2339, 2593, 2664, 3261, 3539
MbiI	CCGCTC	3 cut(s)	126, 804, 2890
MboI	GATC	9 cut(s)	607, 1285, 1609, 2295, 2337, 2591, 2662, 3259, 3537
MfeI	CAATTG	1 cut(s)	3951
MflI	RGATCY	1 cut(s)	2591
MhlI	GDGCHC	5 cut(s)	1570, 1676, 2423, 2448, 2570
MlsI	TGGCCA	2 cut(s)	2630, 3856
MluNI	TGGCCA	2 cut(s)	2630, 3856
Mly113I	GGCGCC	1 cut(s)	1456
MlyI	GAGTC	5 cut(s)	2078, 3341, 3449, 3493, 3843
MmeI	TCCRAC	7 cut(s)	418, 439, 1096, 1117, 1427, 1487, 1761
Mox20I	TGGCCA	2 cut(s)	2630, 3856
MroI	TCCGGA	3 cut(s)	74, 752, 2255
MroXI	GAANNNNTTC	1 cut(s)	1962
MscI	TGGCCA	2 cut(s)	2630, 3856
MslI	CAYNNNNRTG	3 cut(s)	2249, 2840, 3156
Msp20I	TGGCCA	2 cut(s)	2630, 3856
MspA1I	CMGCKG	2 cut(s)	2506, 3982
MspI	CCGG	8 cut(s)	75, 332, 753, 1010, 2256, 2375, 2706, 3095
MspR9I	CCNGG	9 cut(s)	1599, 2127, 2707, 2751, 2760, 2805, 2983, 3096, 3813
MunI	CAATTG	1 cut(s)	3951
Mva1269I	GAATGC	3 cut(s)	163, 841, 2935
MvaI	CCWGG	7 cut(s)	1599, 2127, 2751, 2760, 2805, 2983, 3813
NarI	GGCGCC	1 cut(s)	1456
NciI	CCSGG	2 cut(s)	2707, 3096
NdeI	CATATG	3 cut(s)	550, 1228, 1683
NdeII	GATC	9 cut(s)	607, 1285, 1609, 2295, 2337, 2591, 2662, 3259, 3537
NmuCI	GTSAC	7 cut(s)	687, 1314, 1375, 1384, 1501, 2081, 2846
NspI	RCATGY	3 cut(s)	2971, 3810, 3863
PaeI	GCATGC	1 cut(s)	3810
PagI	TCATGA	1 cut(s)	1735
PaqCI	CACCTGC	1 cut(s)	3970
PciI	ACATGT	2 cut(s)	2967, 3859
PciSI	GCTCTTC	3 cut(s)	1812, 3459, 3782
PctI	GAATGC	3 cut(s)	163, 841, 2935
PdmI	GAANNNNTTC	1 cut(s)	1962
PfeI	GAWTC	8 cut(s)	19, 1963, 2030, 2575, 3011, 3026, 3247, 3521
PflMI	CCANNNNNTGG	2 cut(s)	3125, 3524
PfoI	TCCNGGA	2 cut(s)	2749, 3094
PleI	GAGTC	5 cut(s)	2078, 3340, 3448, 3493, 3842
PluTI	GGCGCC	1 cut(s)	1459
PpsI	GAGTC	5 cut(s)	2078, 3340, 3448, 3493, 3842
PpuMI	RGGWCCY	1 cut(s)	3751
PscI	ACATGT	2 cut(s)	2967, 3859
PshAI	GACNNNNGTC	1 cut(s)	1382
PshBI	ATTAAT	2 cut(s)	2166, 3666
PsiI	TTATAA	1 cut(s)	2385
Psp124BI	GAGCTC	3 cut(s)	1570, 1676, 2448
Psp1406I	AACGTT	1 cut(s)	3082
Psp5II	RGGWCCY	1 cut(s)	3751
Psp6I	CCWGG	7 cut(s)	1597, 2125, 2749, 2758, 2803, 2981, 3811
PspEI	GGTNACC	1 cut(s)	2846
PspFI	CCCAGC	2 cut(s)	1393, 3608
PspGI	CCWGG	7 cut(s)	1597, 2125, 2749, 2758, 2803, 2981, 3811
PspPI	GGNCC	7 cut(s)	1745, 2372, 2985, 3543, 3673, 3751, 3977
PspPPI	RGGWCCY	1 cut(s)	3751
PsrI	GAACNNNNNNTAC	4 cut(s)	318, 350, 996, 1028
PstNI	CAGNNNCTG	1 cut(s)	3524
PsuI	RGATCY	1 cut(s)	2591
PvuII	CAGCTG	1 cut(s)	2506
RseI	CAYNNNNRTG	3 cut(s)	2249, 2840, 3156
SacI	GAGCTC	3 cut(s)	1570, 1676, 2448
SapI	GCTCTTC	3 cut(s)	1812, 3459, 3782
Sau3AI	GATC	9 cut(s)	607, 1285, 1609, 2295, 2337, 2591, 2662, 3259, 3537
Sau96I	GGNCC	7 cut(s)	1745, 2372, 2985, 3543, 3673, 3751, 3977
ScaI	AGTACT	1 cut(s)	2221
SchI	GAGTC	5 cut(s)	2078, 3341, 3449, 3493, 3843
ScrFI	CCNGG	9 cut(s)	1599, 2127, 2707, 2751, 2760, 2805, 2983, 3096, 3813
SduI	GDGCHC	5 cut(s)	1570, 1676, 2423, 2448, 2570
SexAI	ACCWGGT	2 cut(s)	1597, 2758
SfaNI	GCATC	5 cut(s)	299, 977, 1516, 1861, 3741
SfoI	GGCGCC	1 cut(s)	1457
SinI	GGWCC	3 cut(s)	1745, 2372, 3751
SmiMI	CAYNNNNRTG	3 cut(s)	2249, 2840, 3156
SmlI	CTYRAG	6 cut(s)	285, 963, 1811, 2398, 2666, 3278
SmoI	CTYRAG	6 cut(s)	285, 963, 1811, 2398, 2666, 3278
SphI	GCATGC	1 cut(s)	3810
SspDI	GGCGCC	1 cut(s)	1455
SspMI	CTAG	5 cut(s)	264, 464, 942, 1142, 1881
SstI	GAGCTC	3 cut(s)	1570, 1676, 2448
StyD4I	CCNGG	9 cut(s)	1597, 2125, 2705, 2749, 2758, 2803, 2981, 3094, 3811
StyI	CCWWGG	2 cut(s)	660, 3339
TaiI	ACGT	3 cut(s)	206, 884, 3085
TaqI	TCGA	5 cut(s)	237, 915, 2120, 2146, 3105
TatI	WGTACW	5 cut(s)	340, 1018, 2219, 2475, 3507
TauI	GCSGC	3 cut(s)	7, 3629, 3982
TfiI	GAWTC	8 cut(s)	19, 1963, 2030, 2575, 3011, 3026, 3247, 3521
TseFI	GTSAC	7 cut(s)	687, 1314, 1375, 1384, 1501, 2081, 2846
TseI	GCWGC	9 cut(s)	1517, 1769, 1994, 2195, 2378, 3557, 3629, 3794, 3890
Tsp45I	GTSAC	7 cut(s)	687, 1314, 1375, 1384, 1501, 2081, 2846
TspDTI	ATGAA	8 cut(s)	1590, 1800, 2060, 2292, 2423, 2478, 2667, 2955
TspGWI	ACGGA	8 cut(s)	80, 223, 758, 901, 2500, 2578, 3024, 3797
Van91I	CCANNNNNTGG	2 cut(s)	3125, 3524
VpaK11BI	GGWCC	3 cut(s)	1745, 2372, 3751
VspI	ATTAAT	2 cut(s)	2166, 3666
XagI	CCTNNNNNAGG	2 cut(s)	2528, 3158
XbaI	TCTAGA	1 cut(s)	1880
XceI	RCATGY	3 cut(s)	2971, 3810, 3863
XcmI	CCANNNNNNNNNTGG	2 cut(s)	191, 869
XmiI	GTMKAC	3 cut(s)	395, 1073, 3335
XmnI	GAANNNNTTC	1 cut(s)	1962
XspI	CTAG	5 cut(s)	264, 464, 942, 1142, 1881
ZrmI	AGTACT	1 cut(s)	2221

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.