Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0003227

Physical Location & Seq

Genomic Coordinates Reverse (-)

66268084 .. 66282998

Gene Structure 14915 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG408600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2589 bp

ATGCCGTACAGCCAGCGAAAGGGTGGGCAAACGTGGAGAGAGAAAACAAAGACTGACAGCTCCGTCGATAACAGACTTGGTGAATGGAGTGCTAGTGGAAGCAGTGGGCAAACTCAAGCATCAGTGCAAATACGAGCTACTTTCTATCCTAAATTTGAAAATGAGAAGTCAGATCAGGAGATTAGGACAAGGATGATTGAGATGGTATCTGAGGGCTTGGCTACCTTGGAGGTTTCACTTAAACACTCGGGGTCACTTTTTATGTACGCTGGTAATGAGGGTGGTGCTTATGCCAAAAACAGCTTTGGTAATATATATACAGCTGTTGGTGTATTTGTTCTTGGACGGATGTTACGTGAAGCATGGGGATCTGAAGCAGCAAAAAAGCAAGCAGAGTTCAATGATTTCCTAGAGAGGAACCATATGTGCATATCAATGGAGCTCGTAACTGCAGTCCTAGGAGACCATGGACAGCGTCCAAATGAAGATTTTGTTGTGGTGACAGCAGTCACAGAGCTGGGCAATGGGAAGCCAAAGTTCTACTCAACCCCTGAGGAAATCAAAGGTCAAAGCAATATCTATTGTTGTTCTCATTCCAATGATGCATTGTGGTATAAGCTGCTGGAGAAGGGTATAAAAGCAGAGCAAATAAAAGCTCTTCTCAAGGGTGTTGGCTCCTCTTTTTGCCCCGACCATTCAGACTGGCTTGGGGGAGCTGGTGATGCCCAATCTAGAAATGCAGATAAAGCAGTGGTTTCAAAATTTTTACAATCTCACCCTGCTGATTTTTCTACCACCAAATTGCAGGAAGTGATTCGTTTGATGAGAGAAAAGCGTTTTCCTGCTGCCTTTAAATGCTACCATAACTACCACAAACAGGATTCCATGTCCAATGACAACCTTTTCTACAAAATGTTGCGTACCTTTTTGATCCGCAATGGTTTGTCAATTCTTTTTAAAGAAGGTCCGGCTGCTTATAAAGCCTATTACTTGAGGCAAATGAAAATATGGGGCACTTCAGCAGGAAAGCAGAGGGAGCTCAGCAAAATGCTTGATGAATGGGCTGTGTACATACGACGGAAATGTGGAAACAAACAGCTGTCGTCATCAGTGTACCTCAGTGAGGCTGAGCCTTTCCTTGAACAATATGCTAAACGGAGCCCACAGAATCAGGCTCTTATAGGATCTGCTGGAAACTTAGTAAGGGCTGAAGACTTCTTGGCCATAGTTGAGGGAGGAAGAGATGAAGAGGGTGATCTTGAGAAGGAGTTTGTACCATCAAGCCCAAGTGCCTCAACCGGGGACATCATTCCAAAGGCTGAGGGTCTGATTGTATTCTTTCCTGGACTACCTGGTTCTGCTAAGTCAGCACTGTGCAAGGAACTACTCAAAGCCCCTGGAGGATTTGGGGATGATAGGCCAGTTCACACTCTTATGGGTGACCTTTTTAAAGGAAGATATTGGCAGAAGGTCGCTGATGAGCGGAAGAAAAAACCGTATTCTATAATGCTTGCAGACAAGAATGCACCAAATGAAGAAGTGTGGAGACAGATTGAAGACATGTGCCACAGAACCAGGGCCAATGCAGTTCCAGTTGTTCCTGATTCTGAAGGCACTGATTCAAATCCGTTTTCTCTTGACGCATTAGCGGTTTTCGTGTATCGTGTGCTTCAACGTTCTAATCATCCGGGAAACCTCGACAAGAATTCTCCAAATGCTGGCTATGTGCTGTTAATGTTCTATCACCTTTATGAGGGCAAAAGTCGTAGCGAGTTTGATGGTGAATTAGTTGAGCGTTTTGGTTCGCTTGTCAAGATACCACTGCTGAAATCTGATAGGAATCCATTACCTGATCCTGTGAAATCAACTCTTGAGGAGGGAATAAATTTATACAAGCTTCACACTAAGAAACATGGAAGAATGGAGTCTACCAAGGGAACCTATGCAAATGAGTGGGCTAAATGGGAGAAACAGTTGCGAGATGTTTTATTTGGCAATTCAGAGTATCTTAATTCTGTTCAGGTTCCTTTTGAGTCTGCTGTTAAGGAAGTATCAGAAGAGCTAAGTAAGATTGCAAAAGGTGAGTATGAGACTCCAGAGTACAGAACTCCAGATTCTGGGAAGAGGAAGATCGGGGCCATTGTTTTTGCTGCCATTAGCCTGCCTATTACCGAAATCAAAGGTTTGCTTGATAATTTGGCTGGGACAGATAGTAAAGCCGCAGCTTTCCTCAAAGACAAGAATTTGGAGAACCAGATTAATGAGGCCCATGTTACTCTTGCACACAAGAGAAGTCACGGTGTTACTGCAGTGGCTAATTACGGCATCTTCCTACACAAACAGGTCCCTGTGGATATAACTGCACTGCTCTTCACGGATAAAATTGCTGCGTTTGAAGCATGCCCTGGCTCTGTTGAAGGTGAAAGAGTCGTCTCCAAAAACGAGTGGCCACATGTTACCTTATGGACTGCAGAGGGTGTTGCAGCTAAGGAGGCCAACATGTTACATAATTTGCATTTAGAAGGGAAGGCTACTCGTATTGCAATTGACCCACCTGCCACCATTCAGGGGCCGCTGGAGTTTTACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000278 GO:0000281 GO:0000394 GO:0000910 GO:0003006 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003824 GO:0003972 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006388 GO:0006396 GO:0006399 GO:0006725 GO:0006807 GO:0007049 GO:0007275 GO:0008033 GO:0008150 GO:0008152 GO:0008356 GO:0008380 GO:0008452 GO:0009790 GO:0009791 GO:0009793 GO:0009966 GO:0009987 GO:0010069 GO:0010070 GO:0010154 GO:0010467 GO:0010646 GO:0010928 GO:0016070 GO:0016874 GO:0016886 GO:0022402 GO:0022414 GO:0023051 GO:0032501 GO:0032502 GO:0034470 GO:0034641 GO:0034660 GO:0042245 GO:0043170 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0048316 GO:0048583 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0051301 GO:0061458 GO:0061640 GO:0065007 GO:0071704 GO:0090304 GO:0097159 GO:0140098 GO:1901360 GO:1901363 GO:1903047

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

tRNA_lig_CPD

Protein Analysis

862

Amino Acids

96.09

Weight (kDa)

7.6

Isoelectric Point (pI)

38.03

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
tRNA_lig_CPD	PF08302	692 - 843	8.6e-06	Fungal tRNA ligase phosphodiesterase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0003227)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G07910 AT1G07910
fragaria_vesca	FvH4_3g33360 FvH4_3g33360 FvH4_3g33360 FvH4_3g33360 FvH4_3g33360 FvH4_3g33360 FvH4_3g33360 FvH4_3g33360 FvH4_4g02320
malus_domestica	MD03G1112400.v1.1 MD11G1129800.v1.1
prunus_persica	Prupe.6G094700_v2.0.a1
pyrus_communis	pycom11g10750 pycom11g10760
rosa_chinensis	RchiOBHm_Chr4g0389641 RchiOBHm_Chr5g0060751
rosa_laevigata	RLG00000009964 RLG00000035390
rosa_multiflora	Rmu_co8520825.1_g000001 Rmu_sc0006568.1_g000004 Rmu_sc0007419.1_g000006
rosa_roxburghii	Rroxscaffold_1G00019960 Rroxscaffold_5G00335630
rosa_rugosa	Rorug03G0324600 Rorug05G0333400
rosa_samantha	Rh4AG029200 Rh4BG022400 Rh4CG031200 Rh4DG022900 Rh5AG396400 Rh5BG408600 Rh5CG433200 Rh5DG423800
rosa_wichuraiana	Rw4G002180 Rw5G037370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	978
AarI	CACCTGC	1 cut(s)	2563
AasI	GACNNNNNNGTC	1 cut(s)	62
Acc36I	ACCTGC	1 cut(s)	2563
AccB7I	CCANNNNNTGG	2 cut(s)	1718, 2117
AccBSI	CCGCTC	1 cut(s)	1483
AccI	GTMKAC	1 cut(s)	1928
AciI	CCGC	5 cut(s)	934, 1483, 1649, 2220, 2573
AclI	AACGTT	1 cut(s)	1675
AclWI	GGATC	4 cut(s)	376, 925, 1192, 1847
AcoI	YGGCCR	2 cut(s)	1221, 2447
AcsI	RAATTY	5 cut(s)	152, 761, 1705, 1885, 2242
AcuI	CTGAAG	4 cut(s)	393, 1002, 1230, 1629
AfaI	GTAC	7 cut(s)	8, 266, 922, 1070, 1115, 1275, 2102
AfiI	CCNNNNNNNGG	8 cut(s)	19, 877, 1123, 1299, 1718, 1753, 2117, 2568
AflIII	ACRYGT	3 cut(s)	1560, 2452, 2499
AgsI	TTSAA	9 cut(s)	158, 400, 759, 1142, 1556, 1623, 1673, 2396, 2417
AjnI	CCWGG	5 cut(s)	1342, 1351, 1396, 1574, 2404
Alw21I	GWGCWC	2 cut(s)	444, 1041
Alw26I	GTCTC	4 cut(s)	456, 1540, 2084, 2437
AlwI	GGATC	4 cut(s)	376, 925, 1192, 1847
AlwNI	CAGNNNCTG	1 cut(s)	2117
Ama87I	CYCGRG	1 cut(s)	247
AoxI	GGCC	8 cut(s)	1221, 1418, 1578, 2136, 2265, 2447, 2493, 2570
ApeKI	GCWGC	8 cut(s)	377, 619, 845, 971, 2150, 2222, 2387, 2483
ApoI	RAATTY	5 cut(s)	152, 761, 1705, 1885, 2242
AseI	ATTAAT	1 cut(s)	2259
Asp700I	GAANNNNTTC	1 cut(s)	813
AspA2I	CCTAGG	1 cut(s)	457
AspS9I	GGNCC	6 cut(s)	965, 1578, 2136, 2266, 2344, 2570
AsuC2I	CCSGG	2 cut(s)	1300, 1689
AvaI	CYCGRG	1 cut(s)	247
AvaII	GGWCC	2 cut(s)	965, 2344
AvrII	CCTAGG	1 cut(s)	457
AxyI	CCTNAGG	1 cut(s)	552
BaeGI	GKGCMC	1 cut(s)	1016
BalI	TGGCCA	2 cut(s)	1223, 2449
BanII	GRGCYC	3 cut(s)	444, 1041, 1163
BbsI	GAAGAC	2 cut(s)	1218, 1563
Bbv12I	GWGCWC	2 cut(s)	444, 1041
BbvCI	CCTCAGC	1 cut(s)	1320
BbvI	GCAGC	8 cut(s)	389, 606, 832, 958, 2137, 2234, 2374, 2495
BccI	CCATC	3 cut(s)	196, 1285, 1772
BceAI	ACGGC	1 cut(s)	2338
BciT130I	CCWGG	5 cut(s)	1344, 1353, 1398, 1576, 2406
BcnI	CCSGG	2 cut(s)	1300, 1689
BcoDI	GTCTC	4 cut(s)	456, 1540, 2084, 2437
BfaI	CTAG	4 cut(s)	93, 410, 458, 732
BfmI	CTRYAG	3 cut(s)	450, 2307, 2469
BfuAI	ACCTGC	1 cut(s)	2563
BlnI	CCTAGG	1 cut(s)	457
BlpI	GCTNAGC	2 cut(s)	1040, 1128
Bme1390I	CCNGG	7 cut(s)	1300, 1344, 1353, 1398, 1576, 1689, 2406
Bme18I	GGWCC	2 cut(s)	965, 2344
BmeT110I	CYCGRG	1 cut(s)	247
BmgT120I	GGNCC	6 cut(s)	965, 1578, 2136, 2266, 2344, 2570
BmiI	GGNNCC	8 cut(s)	419, 676, 1160, 1939, 2025, 2137, 2346, 2571
BmrFI	CCNGG	7 cut(s)	1300, 1344, 1353, 1398, 1576, 1689, 2406
BmsI	GCATC	4 cut(s)	128, 592, 712, 2334
BoxI	GACNNNNGTC	1 cut(s)	506
BpiI	GAAGAC	2 cut(s)	1218, 1563
BpmI	CTGGAG	4 cut(s)	644, 1419, 2079, 2094
Bpu10I	CCTNAGC	2 cut(s)	1320, 2487
Bpu1102I	GCTNAGC	2 cut(s)	1040, 1128
BpuEI	CTTGAG	5 cut(s)	99, 647, 1012, 1280, 1892
BpuMI	CCSGG	2 cut(s)	1300, 1689
BsaAI	YACGTR	1 cut(s)	356
BsaBI	GATNNNNATC	2 cut(s)	1623, 1839
BsaI	GGTCTC	1 cut(s)	456
BsaJI	CCNNGG	8 cut(s)	225, 457, 466, 1299, 1396, 1575, 1932, 2404
BsaXI	ACNNNNNCTCC	4 cut(s)	79, 109, 1958, 1988
Bsc4I	CCNNNNNNNGG	8 cut(s)	19, 877, 1123, 1299, 1718, 1753, 2117, 2568
Bse1I	ACTGG	3 cut(s)	707, 1421, 1592
Bse21I	CCTNAGG	1 cut(s)	552
Bse3DI	GCAATG	2 cut(s)	529, 943
Bse8I	GATNNNNATC	2 cut(s)	1623, 1839
BseBI	CCWGG	5 cut(s)	1344, 1353, 1398, 1576, 2406
BseDI	CCNNGG	8 cut(s)	225, 457, 466, 1299, 1396, 1575, 1932, 2404
BseGI	GGATG	4 cut(s)	198, 354, 1417, 1684
BseJI	GATNNNNATC	2 cut(s)	1623, 1839
BseLI	CCNNNNNNNGG	8 cut(s)	19, 877, 1123, 1299, 1718, 1753, 2117, 2568
BseMI	GCAATG	2 cut(s)	529, 943
BseMII	CTCAG	6 cut(s)	201, 543, 1054, 1119, 1132, 1311
BseNI	ACTGG	3 cut(s)	707, 1421, 1592
BseRI	GAGGAG	2 cut(s)	667, 1889
BseSI	GKGCMC	1 cut(s)	1016
BseXI	GCAGC	8 cut(s)	389, 606, 832, 958, 2137, 2234, 2374, 2495
BseYI	CCCAGC	2 cut(s)	517, 2201
BsgI	GTGCAG	1 cut(s)	2346
BshFI	GGCC	8 cut(s)	1223, 1420, 1580, 2138, 2267, 2449, 2495, 2572
BsiHKAI	GWGCWC	2 cut(s)	444, 1041
BsiHKCI	CYCGRG	1 cut(s)	247
BsiSI	CCGG	3 cut(s)	968, 1299, 1688
BslFI	GGGAC	3 cut(s)	1316, 2218, 2330
BslI	CCNNNNNNNGG	8 cut(s)	19, 877, 1123, 1299, 1718, 1753, 2117, 2568
BsmAI	GTCTC	4 cut(s)	456, 1540, 2084, 2437
BsmBI	CGTCTC	1 cut(s)	2437
BsmFI	GGGAC	3 cut(s)	1316, 2218, 2330
BsmI	GAATGC	1 cut(s)	1528
BsnI	GGCC	8 cut(s)	1223, 1420, 1580, 2138, 2267, 2449, 2495, 2572
Bso31I	GGTCTC	1 cut(s)	456
BsoBI	CYCGRG	1 cut(s)	247
Bsp1286I	GDGCHC	4 cut(s)	444, 1016, 1041, 1163
Bsp1407I	TGTACA	1 cut(s)	1068
Bsp143I	GATC	7 cut(s)	172, 368, 930, 1184, 1255, 1852, 2130
Bsp1720I	GCTNAGC	2 cut(s)	1040, 1128
Bsp19I	CCATGG	1 cut(s)	466
BspACI	CCGC	5 cut(s)	934, 1483, 1649, 2220, 2573
BspANI	GGCC	8 cut(s)	1223, 1420, 1580, 2138, 2267, 2449, 2495, 2572
BspCNI	CTCAG	6 cut(s)	202, 544, 1053, 1120, 1131, 1312
BspLI	GGNNCC	8 cut(s)	419, 676, 1160, 1939, 2025, 2137, 2346, 2571
BspMAI	CTGCAG	3 cut(s)	454, 2311, 2473
BspMI	ACCTGC	1 cut(s)	2563
BspPI	GGATC	4 cut(s)	376, 925, 1192, 1847
BspQI	GCTCTTC	3 cut(s)	663, 2052, 2375
BspTNI	GGTCTC	1 cut(s)	456
BsrBI	CCGCTC	1 cut(s)	1483
BsrDI	GCAATG	2 cut(s)	529, 943
BsrGI	TGTACA	1 cut(s)	1068
BsrI	ACTGG	3 cut(s)	707, 1421, 1592
BssECI	CCNNGG	8 cut(s)	225, 457, 466, 1299, 1396, 1575, 1932, 2404
BssMI	GATC	7 cut(s)	172, 368, 930, 1184, 1255, 1852, 2130
BssT1I	CCWWGG	4 cut(s)	225, 457, 466, 1932
Bst2UI	CCWGG	5 cut(s)	1344, 1353, 1398, 1576, 2406
Bst4CI	ACNGT	4 cut(s)	1374, 1497, 1974, 2300
Bst6I	CTCTTC	6 cut(s)	663, 1234, 1242, 2052, 2117, 2375
BstAUI	TGTACA	1 cut(s)	1068
BstBAI	YACGTR	1 cut(s)	356
BstC8I	GCNNGC	6 cut(s)	14, 390, 1512, 1720, 2162, 2401
BstDSI	CCRYGG	1 cut(s)	466
BstEII	GGTNACC	1 cut(s)	1439
BstENI	CCTNNNNNAGG	2 cut(s)	1121, 1751
BstF5I	GGATG	4 cut(s)	198, 354, 1417, 1684
BstKTI	GATC	7 cut(s)	175, 371, 933, 1187, 1258, 1855, 2133
BstMAI	GTCTC	4 cut(s)	456, 1540, 2084, 2437
BstMBI	GATC	7 cut(s)	172, 368, 930, 1184, 1255, 1852, 2130
BstMWI	GCNNNNNNNGC	7 cut(s)	722, 746, 980, 1036, 1367, 2396, 2492
BstNI	CCWGG	5 cut(s)	1344, 1353, 1398, 1576, 2406
BstNSI	RCATGY	4 cut(s)	1564, 2403, 2456, 2503
BstPAI	GACNNNNGTC	1 cut(s)	506
BstPI	GGTNACC	1 cut(s)	1439
BstSCI	CCNGG	7 cut(s)	1298, 1342, 1351, 1396, 1574, 1687, 2404
BstSFI	CTRYAG	3 cut(s)	450, 2307, 2469
BstSLI	GKGCMC	1 cut(s)	1016
BstV1I	GCAGC	8 cut(s)	389, 606, 832, 958, 2137, 2234, 2374, 2495
BstV2I	GAAGAC	2 cut(s)	1218, 1563
BstX2I	RGATCY	2 cut(s)	368, 1184
BstYI	RGATCY	2 cut(s)	368, 1184
Bsu36I	CCTNAGG	1 cut(s)	552
BsuRI	GGCC	8 cut(s)	1223, 1420, 1580, 2138, 2267, 2449, 2495, 2572
BtgI	CCRYGG	1 cut(s)	466
BtsCI	GGATG	4 cut(s)	198, 354, 1417, 1684
BtsI	GCAGTG	5 cut(s)	109, 756, 1820, 2316, 2363
BveI	ACCTGC	1 cut(s)	2563
Cac8I	GCNNGC	6 cut(s)	14, 390, 1512, 1720, 2162, 2401
CaiI	CAGNNNCTG	1 cut(s)	2117
Cfr13I	GGNCC	6 cut(s)	965, 1578, 2136, 2266, 2344, 2570
CseI	GACGC	2 cut(s)	464, 1649
CsiI	ACCWGGT	1 cut(s)	1351
Csp6I	GTAC	7 cut(s)	7, 265, 921, 1069, 1114, 1274, 2101
CviAII	CATG	9 cut(s)	363, 467, 886, 1561, 1913, 2270, 2400, 2453, 2500
CviQI	GTAC	7 cut(s)	7, 265, 921, 1069, 1114, 1274, 2101
DpnI	GATC	7 cut(s)	174, 370, 932, 1186, 1257, 1854, 2132
DpnII	GATC	7 cut(s)	172, 368, 930, 1184, 1255, 1852, 2130
DraI	TTTAAA	3 cut(s)	853, 958, 1450
DrdI	GACNNNNNNGTC	1 cut(s)	62
DseDI	GACNNNNNNGTC	1 cut(s)	62
EaeI	YGGCCR	2 cut(s)	1221, 2447
Eam1104I	CTCTTC	6 cut(s)	663, 1234, 1242, 2052, 2117, 2375
EarI	CTCTTC	6 cut(s)	663, 1234, 1242, 2052, 2117, 2375
Ecl136II	GAGCTC	2 cut(s)	442, 1039
Eco130I	CCWWGG	4 cut(s)	225, 457, 466, 1932
Eco24I	GRGCYC	3 cut(s)	444, 1041, 1163
Eco31I	GGTCTC	1 cut(s)	456
Eco47I	GGWCC	2 cut(s)	965, 2344
Eco53kI	GAGCTC	2 cut(s)	442, 1039
Eco57I	CTGAAG	4 cut(s)	393, 1002, 1230, 1629
Eco81I	CCTNAGG	1 cut(s)	552
Eco88I	CYCGRG	1 cut(s)	247
Eco91I	GGTNACC	1 cut(s)	1439
EcoICRI	GAGCTC	2 cut(s)	442, 1039
EcoNI	CCTNNNNNAGG	2 cut(s)	1121, 1751
EcoO109I	RGGNCCY	1 cut(s)	2344
EcoO65I	GGTNACC	1 cut(s)	1439
EcoRI	GAATTC	1 cut(s)	1705
EcoRII	CCWGG	5 cut(s)	1342, 1351, 1396, 1574, 2404
EcoT14I	CCWWGG	4 cut(s)	225, 457, 466, 1932
EcoT22I	ATGCAT	1 cut(s)	607
EcoT38I	GRGCYC	3 cut(s)	444, 1041, 1163
ErhI	CCWWGG	4 cut(s)	225, 457, 466, 1932
Esp3I	CGTCTC	1 cut(s)	2437
FaeI	CATG	9 cut(s)	366, 470, 889, 1564, 1916, 2273, 2403, 2456, 2503
FalI	AAGNNNNNCTT	2 cut(s)	2172, 2204
FaqI	GGGAC	3 cut(s)	1316, 2218, 2330
FatI	CATG	9 cut(s)	362, 466, 885, 1560, 1912, 2269, 2399, 2452, 2499
FauNDI	CATATG	1 cut(s)	423
FblI	GTMKAC	1 cut(s)	1928
FokI	GGATG	4 cut(s)	205, 361, 1424, 1671
FriOI	GRGCYC	3 cut(s)	444, 1041, 1163
FspBI	CTAG	4 cut(s)	93, 410, 458, 732
GsaI	CCCAGC	2 cut(s)	521, 2205
GsuI	CTGGAG	4 cut(s)	644, 1419, 2079, 2094
HaeIII	GGCC	8 cut(s)	1223, 1420, 1580, 2138, 2267, 2449, 2495, 2572
HapII	CCGG	3 cut(s)	968, 1299, 1688
HgaI	GACGC	2 cut(s)	464, 1649
Hin1II	CATG	9 cut(s)	366, 470, 889, 1564, 1916, 2273, 2403, 2456, 2503
HindIII	AAGCTT	1 cut(s)	1895
HpaII	CCGG	3 cut(s)	968, 1299, 1688
Hpy166II	GTNNAC	4 cut(s)	1069, 1114, 1426, 1929
Hpy188I	TCNGA	9 cut(s)	172, 211, 373, 700, 1329, 1609, 1834, 2002, 2056
Hpy188III	TCNNGA	9 cut(s)	176, 732, 1259, 1601, 1637, 1813, 1871, 2096, 2111
Hpy8I	GTNNAC	4 cut(s)	1069, 1114, 1426, 1929
Hpy99I	CGWCG	2 cut(s)	68, 1080
HpyAV	CCTTC	8 cut(s)	622, 956, 1258, 1462, 1604, 2411, 2516, 2521
HpyCH4III	ACNGT	4 cut(s)	1374, 1497, 1974, 2300
HpyCH4IV	ACGT	3 cut(s)	32, 355, 1675
HpyF10VI	GCNNNNNNNGC	7 cut(s)	722, 746, 980, 1036, 1367, 2396, 2492
HpySE526I	ACGT	3 cut(s)	32, 355, 1675
Hsp92II	CATG	9 cut(s)	366, 470, 889, 1564, 1916, 2273, 2403, 2456, 2503
Kzo9I	GATC	7 cut(s)	172, 368, 930, 1184, 1255, 1852, 2130
LguI	GCTCTTC	3 cut(s)	663, 2052, 2375
LmnI	GCTCC	6 cut(s)	65, 439, 680, 713, 1036, 1158
Lsp1109I	GCAGC	8 cut(s)	389, 606, 832, 958, 2137, 2234, 2374, 2495
LweI	GCATC	4 cut(s)	128, 592, 712, 2334
MabI	ACCWGGT	1 cut(s)	1351
MaeI	CTAG	4 cut(s)	93, 410, 458, 732
MaeII	ACGT	3 cut(s)	32, 355, 1675
MalI	GATC	7 cut(s)	174, 370, 932, 1186, 1257, 1854, 2132
MbiI	CCGCTC	1 cut(s)	1483
MboI	GATC	7 cut(s)	172, 368, 930, 1184, 1255, 1852, 2130
MfeI	CAATTG	1 cut(s)	2544
MflI	RGATCY	2 cut(s)	368, 1184
MhlI	GDGCHC	4 cut(s)	444, 1016, 1041, 1163
MlsI	TGGCCA	2 cut(s)	1223, 2449
MluNI	TGGCCA	2 cut(s)	1223, 2449
MlyI	GAGTC	4 cut(s)	1934, 2042, 2086, 2436
Mox20I	TGGCCA	2 cut(s)	1223, 2449
Mph1103I	ATGCAT	1 cut(s)	607
MroXI	GAANNNNTTC	1 cut(s)	813
MscI	TGGCCA	2 cut(s)	1223, 2449
MseI	TTAA	8 cut(s)	240, 852, 957, 1449, 1733, 2010, 2043, 2259
MslI	CAYNNNNRTG	4 cut(s)	434, 597, 1433, 1749
Msp20I	TGGCCA	2 cut(s)	1223, 2449
MspA1I	CMGCKG	3 cut(s)	323, 1099, 2575
MspI	CCGG	3 cut(s)	968, 1299, 1688
MspR9I	CCNGG	7 cut(s)	1300, 1344, 1353, 1398, 1576, 1689, 2406
MunI	CAATTG	1 cut(s)	2544
Mva1269I	GAATGC	1 cut(s)	1528
MvaI	CCWGG	5 cut(s)	1344, 1353, 1398, 1576, 2406
MwoI	GCNNNNNNNGC	7 cut(s)	722, 746, 980, 1036, 1367, 2396, 2492
NciI	CCSGG	2 cut(s)	1300, 1689
NcoI	CCATGG	1 cut(s)	466
NdeI	CATATG	1 cut(s)	423
NdeII	GATC	7 cut(s)	172, 368, 930, 1184, 1255, 1852, 2130
NlaIII	CATG	9 cut(s)	366, 470, 889, 1564, 1916, 2273, 2403, 2456, 2503
NlaIV	GGNNCC	8 cut(s)	419, 676, 1160, 1939, 2025, 2137, 2346, 2571
NmuCI	GTSAC	5 cut(s)	252, 499, 508, 1439, 2294
NsiI	ATGCAT	1 cut(s)	607
NspI	RCATGY	4 cut(s)	1564, 2403, 2456, 2503
PaeI	GCATGC	1 cut(s)	2403
PaqCI	CACCTGC	1 cut(s)	2563
PciI	ACATGT	3 cut(s)	1560, 2452, 2499
PciSI	GCTCTTC	3 cut(s)	663, 2052, 2375
PcsI	WCGNNNNNNNCGW	1 cut(s)	352
PctI	GAATGC	1 cut(s)	1528
PdmI	GAANNNNTTC	1 cut(s)	813
PfeI	GAWTC	7 cut(s)	814, 881, 1168, 1604, 1619, 1840, 2114
PflFI	GACNNNGTC	1 cut(s)	474
PflMI	CCANNNNNTGG	2 cut(s)	1718, 2117
PfoI	TCCNGGA	2 cut(s)	1342, 1687
PleI	GAGTC	4 cut(s)	1933, 2041, 2086, 2435
PpsI	GAGTC	4 cut(s)	1933, 2041, 2086, 2435
Ppu21I	YACGTR	1 cut(s)	356
PpuMI	RGGWCCY	1 cut(s)	2344
PscI	ACATGT	3 cut(s)	1560, 2452, 2499
PshAI	GACNNNNGTC	1 cut(s)	506
PshBI	ATTAAT	1 cut(s)	2259
PsiI	TTATAA	1 cut(s)	978
Psp124BI	GAGCTC	2 cut(s)	444, 1041
Psp1406I	AACGTT	1 cut(s)	1675
Psp5II	RGGWCCY	1 cut(s)	2344
Psp6I	CCWGG	5 cut(s)	1342, 1351, 1396, 1574, 2404
PspEI	GGTNACC	1 cut(s)	1439
PspFI	CCCAGC	2 cut(s)	517, 2201
PspGI	CCWGG	5 cut(s)	1342, 1351, 1396, 1574, 2404
PspN4I	GGNNCC	8 cut(s)	419, 676, 1160, 1939, 2025, 2137, 2346, 2571
PspPI	GGNCC	6 cut(s)	965, 1578, 2136, 2266, 2344, 2570
PspPPI	RGGWCCY	1 cut(s)	2344
PstI	CTGCAG	3 cut(s)	454, 2311, 2473
PstNI	CAGNNNCTG	1 cut(s)	2117
PsuI	RGATCY	2 cut(s)	368, 1184
PsyI	GACNNNGTC	1 cut(s)	474
PvuII	CAGCTG	2 cut(s)	323, 1099
RsaI	GTAC	7 cut(s)	8, 266, 922, 1070, 1115, 1275, 2102
RsaNI	GTAC	7 cut(s)	7, 265, 921, 1069, 1114, 1274, 2101
RseI	CAYNNNNRTG	4 cut(s)	434, 597, 1433, 1749
SacI	GAGCTC	2 cut(s)	444, 1041
SapI	GCTCTTC	3 cut(s)	663, 2052, 2375
SaqAI	TTAA	8 cut(s)	240, 852, 957, 1449, 1733, 2010, 2043, 2259
Sau3AI	GATC	7 cut(s)	172, 368, 930, 1184, 1255, 1852, 2130
Sau96I	GGNCC	6 cut(s)	965, 1578, 2136, 2266, 2344, 2570
SchI	GAGTC	4 cut(s)	1934, 2042, 2086, 2436
ScrFI	CCNGG	7 cut(s)	1300, 1344, 1353, 1398, 1576, 1689, 2406
SduI	GDGCHC	4 cut(s)	444, 1016, 1041, 1163
SexAI	ACCWGGT	1 cut(s)	1351
SfaNI	GCATC	4 cut(s)	128, 592, 712, 2334
SfcI	CTRYAG	3 cut(s)	450, 2307, 2469
SinI	GGWCC	2 cut(s)	965, 2344
SmiMI	CAYNNNNRTG	4 cut(s)	434, 597, 1433, 1749
SmlI	CTYRAG	5 cut(s)	114, 662, 991, 1259, 1871
SmoI	CTYRAG	5 cut(s)	114, 662, 991, 1259, 1871
SphI	GCATGC	1 cut(s)	2403
SsiI	CCGC	5 cut(s)	934, 1483, 1649, 2220, 2573
SspMI	CTAG	4 cut(s)	93, 410, 458, 732
SstI	GAGCTC	2 cut(s)	444, 1041
StyD4I	CCNGG	7 cut(s)	1298, 1342, 1351, 1396, 1574, 1687, 2404
StyI	CCWWGG	4 cut(s)	225, 457, 466, 1932
TaaI	ACNGT	4 cut(s)	1374, 1497, 1974, 2300
TaiI	ACGT	3 cut(s)	35, 358, 1678
TaqI	TCGA	2 cut(s)	66, 1698
TatI	WGTACW	2 cut(s)	1068, 2100
TauI	GCSGC	2 cut(s)	2222, 2575
TfiI	GAWTC	7 cut(s)	814, 881, 1168, 1604, 1619, 1840, 2114
Tru1I	TTAA	8 cut(s)	240, 852, 957, 1449, 1733, 2010, 2043, 2259
Tru9I	TTAA	8 cut(s)	240, 852, 957, 1449, 1733, 2010, 2043, 2259
TseFI	GTSAC	5 cut(s)	252, 499, 508, 1439, 2294
TseI	GCWGC	8 cut(s)	377, 619, 845, 971, 2150, 2222, 2387, 2483
Tsp45I	GTSAC	5 cut(s)	252, 499, 508, 1439, 2294
TspDTI	ATGAA	5 cut(s)	498, 1016, 1071, 1260, 1548
TspGWI	ACGGA	6 cut(s)	52, 361, 1093, 1171, 1617, 2390
Tth111I	GACNNNGTC	1 cut(s)	474
Van91I	CCANNNNNTGG	2 cut(s)	1718, 2117
VpaK11BI	GGWCC	2 cut(s)	965, 2344
VspI	ATTAAT	1 cut(s)	2259
XagI	CCTNNNNNAGG	2 cut(s)	1121, 1751
XapI	RAATTY	5 cut(s)	152, 761, 1705, 1885, 2242
XbaI	TCTAGA	1 cut(s)	731
XceI	RCATGY	4 cut(s)	1564, 2403, 2456, 2503
XcmI	CCANNNNNNNNNTGG	1 cut(s)	20
XmaJI	CCTAGG	1 cut(s)	457
XmiI	GTMKAC	1 cut(s)	1928
XmnI	GAANNNNTTC	1 cut(s)	813
XspI	CTAG	4 cut(s)	93, 410, 458, 732
Zsp2I	ATGCAT	1 cut(s)	607

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.