Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8520825.1

Orthogroup ID

OG0003227

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 3305

Gene Structure 3305 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8520825.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3147 bp

ggtccagtaaaaggtcaaaggggaatttggaaaagccgaaatcttgttgctgcggcggcggtggaagaaagaacttctggtgcaagcaacttgttgatggataatttaatggaaaagtttagtgtagacgactcgacgtatgctcaggtgcaagtccgagctactttctatcccaagtttgagaatgagaagtccgatcaggaggttaggacaaggatgatagagttggtgtcgaaagggttggctacattggaggtttccctcaagcactcggggtcactttttatgtatgctggtagtgagggtggtgcgtatgcgaaaaatagctttgggaatatatatactgctgtgggtgtgtttgttctggggaggatgtttcgtgaggcgtggggatcagaagcagcaaggatgcaagcagagtttaatgattttcttgagaggaaccgtatgtgtatatcaatggaacttgtgactgctgttctaggagatcatggacagcgtccgaaagaagattttgttgtggtcacggccgtcacggagttgggcaatgggaagccaaagttctactcaactcccgagattattgcattctgtcggaattggcgcctgcccacaaatcatgtatggctgttctcaacaaggaaagcagtgacatctttttttgctgcttttgatgccctgtctgaagaaggaactgcaacaagtgtatgcagagctcttgatgaagttgcagatatatctataccaggttccaaagatcacatcaaggtgcaaggtgaaatcttagagggtattgttgctcgtattgtaagccatgagagctcaaagcatatggagaaagtcttaaaagatttccctcctccaccaatggaaggagctggtcttgatttgggaccaagcctaagggagatttgcgctgcaaataggtctgatgaaacacagcaaataaaagcacttcttaagggtgtcggctcctctttttgtcctgaccattcagactggcttgggcctggagctggtgatgcacattctaaaaatgtagatcaatcagtgctatcaaaatttttaaaatctcatcctgctgatttttctaccaccaaattgcaggaagtggtttgtttgatgagagaaaagcgtttacctgctgcctttaaatgctaccagaactaccacaagcatgattccatgtccagtgacaacgttttctataaaatggtcattcatgtccgtagcgactctgcatttcagcggtatcagaaagagatgaagtcaaagccaggactgtggcctttatatcgaggttttttcgttgacattaatttgttcaaggcaaacaaggagagagctgctgagattgcaaaaaacaaaagcactgttgtggacataaatgggggctgtggtatgtcaggaaaacatggattggcggaagaagatgcaaacttaatgatcaaattgaaatttcttacatataagctgcgaacttttttgatccgcaatggtttatcaactctatttaaacaaggtccggctgcttataaagcctattacttgaggcaaatgaaaatatggggcacttcagcaggaaagcagagggaactcagcaagatgcttgatgaatgggctgtgtacatacgaaggaaatgtggaaacaaacacatgtcgtcatcagtgtacctcagcgaggctgagcctttccttgaacagtatgcaaaacgtagcccacagaatcaggctcttataggatctgccggaaacttggtaaatgctgaaaacttcttggccatagttgagggaggaatagatgaagagggtgatctcgagaaggagtctgtaccatcaagccccagtgcctcagttgcagacaccattccaaaggctgagggtctgattgtattctttcctggactacctggttctgccaagtcagcactatgcaaggaactactcaaagccccgggaggatttggggatgatcggccagttcaaagtctaatgggtgatcttgttaaaggaaaatattggcagaaggtcgctgatcagtgcaggaaaaaaccatattctataatgctcgcagacaagaatgcaccaaacgtagaagtgtggagacaggtcgaagacatgtgccacagaacaagggcctctgctgtaccagttgttcctgattctgaaggaactgaatcaaatccgttttctcttgacgcattagcggttttcatgtttcgtgtgcttcaacgttctaatcatccgggaaaccttgacaaaaattcaccgaatgctggctatgttctgctaatgttctatcacctttatgagggcaagactcggagagaatttgagtctgaactagttgagcgttttggttcacttgtcaaaataccactgctgacatcggagaggaatccattaccggatcctgtgaaatcaactcttgaggatggaataaatttatacaaccttcacactgatagacatggaagatgggattcaagcaggggagcctacacaaaggagtgggctaaatgggagaaacagttgcgagaggttttgtttggcaatgcacggtattttaattctgttcaagttccctttgagtcttctgttaaggaagtatcagaacagctaagaaagattgcaaaaggtgagtataagactccagagtacaggacttcagattctgggaagaggaagatctcggccattacatttgctgccatcaacctgcctattaccgatatcaaaggtttgcttgataatttggctgggaaagatagtaaagtcgaagcttttctaaaagacaagaatttggagaacagcattaataaggctcatgttactcttgcgcacaagagaagtcatggtgttactgccgtggctaattatggcaccttcctacacaaacaggtccctgtggatataactgcacttctcttcacggataaaatggctgcattcgaagcttgccctggctctgttgaaggtgaaagagtcacccccaaaaatgaatggcctcatgttaccttatggacagcagagggtgttttagccaaggaggcccacttgttaagcaatttgcatttagagggcaaggctacctgtattgcgattgacccacctgccaccattcatgggacgctggagttttactga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000278 GO:0000281 GO:0000394 GO:0000910 GO:0003006 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003824 GO:0003972 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006388 GO:0006396 GO:0006399 GO:0006725 GO:0006807 GO:0007049 GO:0007275 GO:0008033 GO:0008150 GO:0008152 GO:0008356 GO:0008380 GO:0008452 GO:0009790 GO:0009791 GO:0009793 GO:0009966 GO:0009987 GO:0010069 GO:0010070 GO:0010154 GO:0010467 GO:0010646 GO:0010928 GO:0016070 GO:0016874 GO:0016886 GO:0022402 GO:0022414 GO:0023051 GO:0032501 GO:0032502 GO:0034470 GO:0034641 GO:0034660 GO:0042245 GO:0043170 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0048316 GO:0048583 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0051301 GO:0061458 GO:0061640 GO:0065007 GO:0071704 GO:0090304 GO:0097159 GO:0140098 GO:1901360 GO:1901363 GO:1903047

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

tRNA_lig_CPD

Protein Analysis

1048

Amino Acids

116.59

Weight (kDa)

8.59

Isoelectric Point (pI)

34.97

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003227)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G07910 AT1G07910
fragaria_vesca	FvH4_3g33360 FvH4_3g33360 FvH4_3g33360 FvH4_3g33360 FvH4_3g33360 FvH4_3g33360 FvH4_3g33360 FvH4_3g33360 FvH4_4g02320
malus_domestica	MD03G1112400.v1.1 MD11G1129800.v1.1
prunus_persica	Prupe.6G094700_v2.0.a1
pyrus_communis	pycom11g10750 pycom11g10760
rosa_chinensis	RchiOBHm_Chr4g0389641 RchiOBHm_Chr5g0060751
rosa_laevigata	RLG00000009964 RLG00000035390
rosa_multiflora	Rmu_co8520825.1_g000001 Rmu_sc0006568.1_g000004 Rmu_sc0007419.1_g000006
rosa_roxburghii	Rroxscaffold_1G00019960 Rroxscaffold_5G00335630
rosa_rugosa	Rorug03G0324600 Rorug05G0333400
rosa_samantha	Rh4AG029200 Rh4BG022400 Rh4CG031200 Rh4DG022900 Rh5AG396400 Rh5BG408600 Rh5CG433200 Rh5DG423800
rosa_wichuraiana	Rw4G002180 Rw5G037370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1536
AarI	CACCTGC	1 cut(s)	3121
Acc16I	TGCGCA	1 cut(s)	2841
Acc36I	ACCTGC	3 cut(s)	1150, 2727, 3121
AccB1I	GGYRCC	2 cut(s)	603, 2882
AccI	GTMKAC	1 cut(s)	126
AciI	CCGC	7 cut(s)	53, 56, 59, 1249, 1424, 1492, 2207
AclI	AACGTT	2 cut(s)	1200, 2233
AclWI	GGATC	5 cut(s)	400, 1483, 1750, 2405, 2418
AcoI	YGGCCR	4 cut(s)	528, 1779, 1976, 2694
AcsI	RAATTY	7 cut(s)	24, 1061, 1457, 2263, 2330, 2443, 2800
AcuI	CTGAAG	4 cut(s)	705, 1560, 2187, 2652
AcyI	GRCGYC	1 cut(s)	604
AfaI	GTAC	5 cut(s)	1628, 1673, 1833, 2148, 2660
AfiI	CCNNNNNNNGG	7 cut(s)	11, 872, 1016, 1681, 2276, 2311, 3126
AflII	CTTAAG	1 cut(s)	959
AflIII	ACRYGT	2 cut(s)	1656, 2118
AgsI	TTSAA	8 cut(s)	1327, 1456, 1700, 1985, 2231, 2487, 2579, 2975
AhlI	ACTAGT	1 cut(s)	2344
AjnI	CCWGG	6 cut(s)	745, 1009, 1276, 1900, 1909, 2962
AleI	CACNNNNGTG	1 cut(s)	1376
Alw21I	GWGCWC	2 cut(s)	718, 824
Alw26I	GTCTC	1 cut(s)	2098
AlwI	GGATC	5 cut(s)	400, 1483, 1750, 2405, 2418
AlwNI	CAGNNNCTG	1 cut(s)	2675
Ama87I	CYCGRG	4 cut(s)	271, 575, 1817, 1954
AoxI	GGCC	9 cut(s)	528, 1007, 1286, 1779, 1976, 2136, 2694, 3005, 3051
ApoI	RAATTY	7 cut(s)	24, 1061, 1457, 2263, 2330, 2443, 2800
AseI	ATTAAT	2 cut(s)	1317, 2817
Asp700I	GAANNNNTTC	1 cut(s)	2784
AspLEI	GCGC	3 cut(s)	606, 917, 2842
AspS9I	GGNCC	7 cut(s)	2, 893, 1007, 1523, 2136, 2902, 3052
AsuC2I	CCSGG	3 cut(s)	1955, 1956, 2247
AsuHPI	GGTGA	9 cut(s)	788, 1031, 1823, 2009, 2259, 2294, 2651, 2980, 2990
AsuII	TTCGAA	1 cut(s)	2952
AvaI	CYCGRG	4 cut(s)	271, 575, 1817, 1954
AvaII	GGWCC	4 cut(s)	2, 893, 1523, 2902
AxyI	CCTNAGG	1 cut(s)	902
BaeGI	GKGCMC	1 cut(s)	1574
BalI	TGGCCA	1 cut(s)	1781
BamHI	GGATCC	1 cut(s)	2410
BanI	GGYRCC	2 cut(s)	603, 2882
BanII	GRGCYC	2 cut(s)	718, 824
BbsI	GAAGAC	2 cut(s)	2121, 2586
Bbv12I	GWGCWC	2 cut(s)	718, 824
BbvCI	CCTCAGC	2 cut(s)	1676, 1878
BccI	CCATC	5 cut(s)	91, 1843, 2429, 2472, 2720
BceAI	ACGGC	3 cut(s)	515, 543, 2852
BcgI	CGANNNNNNTGC	2 cut(s)	566, 600
BciT130I	CCWGG	6 cut(s)	747, 1011, 1278, 1902, 1911, 2964
BclI	TGATCA	2 cut(s)	1446, 2035
BcnI	CCSGG	3 cut(s)	1955, 1956, 2247
BcoDI	GTCTC	1 cut(s)	2098
BcuI	ACTAGT	1 cut(s)	2344
BfaI	CTAG	2 cut(s)	482, 2345
BfoI	RGCGCY	1 cut(s)	607
BfrI	CTTAAG	1 cut(s)	959
BfuAI	ACCTGC	3 cut(s)	1150, 2727, 3121
BglI	GCCNNNNNGGC	1 cut(s)	3050
BglII	AGATCT	1 cut(s)	2688
BlpI	GCTNAGC	1 cut(s)	1686
Bme1390I	CCNGG	9 cut(s)	747, 1011, 1278, 1902, 1911, 1955, 1956, 2247, 2964
Bme18I	GGWCC	4 cut(s)	2, 893, 1523, 2902
BmeT110I	CYCGRG	4 cut(s)	271, 575, 1817, 1954
BmgT120I	GGNCC	7 cut(s)	2, 893, 1007, 1523, 2136, 2902, 3052
BmiI	GGNNCC	9 cut(s)	443, 605, 751, 894, 973, 2412, 2497, 2884, 2904
BmrFI	CCNGG	9 cut(s)	747, 1011, 1278, 1902, 1911, 1955, 1956, 2247, 2964
BmrI	ACTGGG	1 cut(s)	1839
BmsI	GCATC	5 cut(s)	399, 664, 1012, 1423, 1596
BmuI	ACTGGG	1 cut(s)	1839
BpiI	GAAGAC	2 cut(s)	2121, 2586
BpmI	CTGGAG	2 cut(s)	1032, 2637
Bpu10I	CCTNAGC	3 cut(s)	144, 1676, 1878
Bpu1102I	GCTNAGC	1 cut(s)	1686
Bpu14I	TTCGAA	1 cut(s)	2952
BpuEI	CTTGAG	4 cut(s)	248, 455, 1570, 2450
BpuMI	CCSGG	3 cut(s)	1955, 1956, 2247
BsaHI	GRCGYC	1 cut(s)	604
BsaJI	CCNNGG	5 cut(s)	1953, 1954, 2868, 2962, 3045
BsaWI	WCCGGW	1 cut(s)	2407
BsaXI	ACNNNNNCTCC	2 cut(s)	2516, 2546
Bsc4I	CCNNNNNNNGG	7 cut(s)	11, 872, 1016, 1681, 2276, 2311, 3126
Bse1I	ACTGG	6 cut(s)	5, 1004, 1191, 1845, 1979, 2150
Bse21I	CCTNAGG	1 cut(s)	902
Bse3DI	GCAATG	3 cut(s)	553, 1501, 2560
BseBI	CCWGG	6 cut(s)	747, 1011, 1278, 1902, 1911, 2964
BseDI	CCNNGG	5 cut(s)	1953, 1954, 2868, 2962, 3045
BseGI	GGATG	7 cut(s)	222, 378, 414, 1075, 1975, 2242, 2440
BseLI	CCNNNNNNNGG	7 cut(s)	11, 872, 1016, 1681, 2276, 2311, 3126
BseMI	GCAATG	3 cut(s)	553, 1501, 2560
BseMII	CTCAG	7 cut(s)	158, 1341, 1612, 1677, 1690, 1866, 1869
BseNI	ACTGG	6 cut(s)	5, 1004, 1191, 1845, 1979, 2150
BseRI	GAGGAG	2 cut(s)	849, 964
BseSI	GKGCMC	1 cut(s)	1574
BseX3I	CGGCCG	1 cut(s)	528
BseYI	CCCAGC	1 cut(s)	2759
BsgI	GTGCAG	2 cut(s)	2062, 2904
Bsh1285I	CGRYCG	1 cut(s)	531
BshFI	GGCC	9 cut(s)	530, 1009, 1288, 1781, 1978, 2138, 2696, 3007, 3053
BshNI	GGYRCC	2 cut(s)	603, 2882
BsiEI	CGRYCG	1 cut(s)	531
BsiHKAI	GWGCWC	2 cut(s)	718, 824
BsiHKCI	CYCGRG	4 cut(s)	271, 575, 1817, 1954
BsiSI	CCGG	5 cut(s)	1526, 1749, 1955, 2246, 2408
BslFI	GGGAC	3 cut(s)	906, 2888, 3142
BslI	CCNNNNNNNGG	7 cut(s)	11, 872, 1016, 1681, 2276, 2311, 3126
BsmAI	GTCTC	1 cut(s)	2098
BsmFI	GGGAC	3 cut(s)	906, 2888, 3142
BsmI	GAATGC	4 cut(s)	587, 2086, 2278, 2948
BsnI	GGCC	9 cut(s)	530, 1009, 1288, 1781, 1978, 2138, 2696, 3007, 3053
BsoBI	CYCGRG	4 cut(s)	271, 575, 1817, 1954
Bsp119I	TTCGAA	1 cut(s)	2952
Bsp1286I	GDGCHC	3 cut(s)	718, 824, 1574
Bsp1407I	TGTACA	1 cut(s)	1626
Bsp1720I	GCTNAGC	1 cut(s)	1686
BspACI	CCGC	7 cut(s)	53, 56, 59, 1249, 1424, 1492, 2207
BspANI	GGCC	9 cut(s)	530, 1009, 1288, 1781, 1978, 2138, 2696, 3007, 3053
BspCNI	CTCAG	7 cut(s)	157, 1342, 1611, 1678, 1689, 1865, 1870
BspLI	GGNNCC	9 cut(s)	443, 605, 751, 894, 973, 2412, 2497, 2884, 2904
BspMI	ACCTGC	3 cut(s)	1150, 2727, 3121
BspPI	GGATC	5 cut(s)	400, 1483, 1750, 2405, 2418
BspT104I	TTCGAA	1 cut(s)	2952
BspT107I	GGYRCC	2 cut(s)	603, 2882
BspTI	CTTAAG	1 cut(s)	959
BsrDI	GCAATG	3 cut(s)	553, 1501, 2560
BsrGI	TGTACA	1 cut(s)	1626
BsrI	ACTGG	6 cut(s)	5, 1004, 1191, 1845, 1979, 2150
BssECI	CCNNGG	5 cut(s)	1953, 1954, 2868, 2962, 3045
BssNI	GRCGYC	1 cut(s)	604
BssT1I	CCWWGG	1 cut(s)	3045
Bst2UI	CCWGG	6 cut(s)	747, 1011, 1278, 1902, 1911, 2964
Bst4CI	ACNGT	6 cut(s)	446, 1284, 1375, 1704, 2532, 2562
Bst6I	CTCTTC	3 cut(s)	1800, 2675, 2933
BstACI	GRCGYC	1 cut(s)	604
BstAFI	CTTAAG	1 cut(s)	959
BstAUI	TGTACA	1 cut(s)	1626
BstBI	TTCGAA	1 cut(s)	2952
BstC8I	GCNNGC	6 cut(s)	85, 414, 608, 2070, 2278, 2959
BstDSI	CCRYGG	1 cut(s)	2868
BstENI	CCTNNNNNAGG	2 cut(s)	1679, 2309
BstF5I	GGATG	7 cut(s)	222, 378, 414, 1075, 1975, 2242, 2440
BstH2I	RGCGCY	1 cut(s)	607
BstHHI	GCGC	3 cut(s)	606, 917, 2842
BstMAI	GTCTC	1 cut(s)	2098
BstMCI	CGRYCG	1 cut(s)	531
BstNI	CCWGG	6 cut(s)	747, 1011, 1278, 1902, 1911, 2964
BstNSI	RCATGY	2 cut(s)	1660, 2122
BstSCI	CCNGG	9 cut(s)	745, 1009, 1276, 1900, 1909, 1953, 1954, 2245, 2962
BstSLI	GKGCMC	1 cut(s)	1574
BstV2I	GAAGAC	2 cut(s)	2121, 2586
BstX2I	RGATCY	3 cut(s)	1742, 2410, 2688
BstXI	CCANNNNNNTGG	1 cut(s)	1284
BstYI	RGATCY	3 cut(s)	1742, 2410, 2688
BstZI	CGGCCG	1 cut(s)	528
Bsu36I	CCTNAGG	1 cut(s)	902
BsuRI	GGCC	9 cut(s)	530, 1009, 1288, 1781, 1978, 2138, 2696, 3007, 3053
BtgI	CCRYGG	1 cut(s)	2868
BtsCI	GGATG	7 cut(s)	222, 378, 414, 1075, 1975, 2242, 2440
BtsI	GCAGTG	2 cut(s)	654, 2378
BtsIMutI	CAGTG	9 cut(s)	654, 1056, 1198, 1371, 1674, 1852, 2045, 2378, 2460
BveI	ACCTGC	3 cut(s)	1150, 2727, 3121
Cac8I	GCNNGC	6 cut(s)	85, 414, 608, 2070, 2278, 2959
CaiI	CAGNNNCTG	1 cut(s)	2675
CfoI	GCGC	3 cut(s)	606, 917, 2842
Cfr13I	GGNCC	7 cut(s)	2, 893, 1007, 1523, 2136, 2902, 3052
Cfr9I	CCCGGG	1 cut(s)	1954
CseI	GACGC	3 cut(s)	488, 2207, 3139
CsiI	ACCWGGT	2 cut(s)	745, 1909
Csp6I	GTAC	5 cut(s)	1627, 1672, 1832, 2147, 2659
CviQI	GTAC	5 cut(s)	1627, 1672, 1832, 2147, 2659
DinI	GGCGCC	1 cut(s)	605
DraI	TTTAAA	3 cut(s)	1068, 1153, 1516
EaeI	YGGCCR	4 cut(s)	528, 1779, 1976, 2694
EagI	CGGCCG	1 cut(s)	528
Eam1104I	CTCTTC	3 cut(s)	1800, 2675, 2933
EarI	CTCTTC	3 cut(s)	1800, 2675, 2933
EciI	GGCGGA	1 cut(s)	1439
Ecl136II	GAGCTC	2 cut(s)	716, 822
EclXI	CGGCCG	1 cut(s)	528
Eco130I	CCWWGG	1 cut(s)	3045
Eco24I	GRGCYC	2 cut(s)	718, 824
Eco32I	GATATC	1 cut(s)	2734
Eco47I	GGWCC	4 cut(s)	2, 893, 1523, 2902
Eco52I	CGGCCG	1 cut(s)	528
Eco53kI	GAGCTC	2 cut(s)	716, 822
Eco57I	CTGAAG	4 cut(s)	705, 1560, 2187, 2652
Eco81I	CCTNAGG	1 cut(s)	902
Eco88I	CYCGRG	4 cut(s)	271, 575, 1817, 1954
EcoICRI	GAGCTC	2 cut(s)	716, 822
EcoNI	CCTNNNNNAGG	2 cut(s)	1679, 2309
EcoO109I	RGGNCCY	2 cut(s)	2136, 2902
EcoRII	CCWGG	6 cut(s)	745, 1009, 1276, 1900, 1909, 2962
EcoRV	GATATC	1 cut(s)	2734
EcoT14I	CCWWGG	1 cut(s)	3045
EcoT38I	GRGCYC	2 cut(s)	718, 824
EgeI	GGCGCC	1 cut(s)	605
EheI	GGCGCC	1 cut(s)	605
ErhI	CCWWGG	1 cut(s)	3045
FalI	AAGNNNNNCTT	4 cut(s)	942, 974, 2730, 2762
FaqI	GGGAC	3 cut(s)	906, 2888, 3142
FauNDI	CATATG	1 cut(s)	831
FbaI	TGATCA	2 cut(s)	1446, 2035
FblI	GTMKAC	1 cut(s)	126
FokI	GGATG	7 cut(s)	229, 385, 421, 1062, 1982, 2229, 2447
FriOI	GRGCYC	2 cut(s)	718, 824
FspBI	CTAG	2 cut(s)	482, 2345
FspI	TGCGCA	1 cut(s)	2841
GlaI	GCGC	3 cut(s)	605, 916, 2841
GsaI	CCCAGC	1 cut(s)	2763
GsuI	CTGGAG	2 cut(s)	1032, 2637
HaeII	RGCGCY	1 cut(s)	607
HaeIII	GGCC	9 cut(s)	530, 1009, 1288, 1781, 1978, 2138, 2696, 3007, 3053
HapII	CCGG	5 cut(s)	1526, 1749, 1955, 2246, 2408
HgaI	GACGC	3 cut(s)	488, 2207, 3139
HhaI	GCGC	3 cut(s)	606, 917, 2842
Hin1I	GRCGYC	1 cut(s)	604
Hin6I	GCGC	3 cut(s)	604, 915, 2840
HinP1I	GCGC	3 cut(s)	604, 915, 2840
HincII	GTYRAC	1 cut(s)	1312
HindII	GTYRAC	1 cut(s)	1312
HindIII	AAGCTT	2 cut(s)	2781, 2955
HpaII	CCGG	5 cut(s)	1526, 1749, 1955, 2246, 2408
HphI	GGTGA	9 cut(s)	788, 1031, 1823, 2009, 2259, 2294, 2651, 2980, 2990
Hpy166II	GTNNAC	7 cut(s)	127, 1139, 1312, 1381, 1627, 1672, 2363
Hpy8I	GTNNAC	7 cut(s)	127, 1139, 1312, 1381, 1627, 1672, 2363
Hpy99I	CGWCG	1 cut(s)	139
HpyAV	CCTTC	9 cut(s)	683, 866, 1629, 1816, 2020, 2162, 2465, 2896, 2969
HpyCH4III	ACNGT	6 cut(s)	446, 1284, 1375, 1704, 2532, 2562
HpyCH4IV	ACGT	5 cut(s)	137, 1200, 1714, 2091, 2233
HpySE526I	ACGT	5 cut(s)	137, 1200, 1714, 2091, 2233
Hsp92I	GRCGYC	1 cut(s)	604
HspAI	GCGC	3 cut(s)	604, 915, 2840
KasI	GGCGCC	1 cut(s)	603
Ksp22I	TGATCA	2 cut(s)	1446, 2035
LmnI	GCTCC	4 cut(s)	875, 977, 1013, 2495
LweI	GCATC	5 cut(s)	399, 664, 1012, 1423, 1596
MabI	ACCWGGT	2 cut(s)	745, 1909
MaeI	CTAG	2 cut(s)	482, 2345
MaeII	ACGT	5 cut(s)	137, 1200, 1714, 2091, 2233
MflI	RGATCY	3 cut(s)	1742, 2410, 2688
MhlI	GDGCHC	3 cut(s)	718, 824, 1574
MlsI	TGGCCA	1 cut(s)	1781
MluNI	TGGCCA	1 cut(s)	1781
Mly113I	GGCGCC	1 cut(s)	604
MlyI	GAGTC	8 cut(s)	125, 1229, 1835, 2314, 2345, 2600, 2644, 2994
MmeI	TCCRAC	1 cut(s)	575
Mox20I	TGGCCA	1 cut(s)	1781
MroXI	GAANNNNTTC	1 cut(s)	2784
MscI	TGGCCA	1 cut(s)	1781
MslI	CAYNNNNRTG	4 cut(s)	767, 1176, 1376, 2307
Msp20I	TGGCCA	1 cut(s)	1781
MspA1I	CMGCKG	1 cut(s)	1249
MspCI	CTTAAG	1 cut(s)	959
MspI	CCGG	5 cut(s)	1526, 1749, 1955, 2246, 2408
MspR9I	CCNGG	9 cut(s)	747, 1011, 1278, 1902, 1911, 1955, 1956, 2247, 2964
Mva1269I	GAATGC	4 cut(s)	587, 2086, 2278, 2948
MvaI	CCWGG	6 cut(s)	747, 1011, 1278, 1902, 1911, 2964
NarI	GGCGCC	1 cut(s)	604
NciI	CCSGG	3 cut(s)	1955, 1956, 2247
NdeI	CATATG	1 cut(s)	831
NlaIV	GGNNCC	9 cut(s)	443, 605, 751, 894, 973, 2412, 2497, 2884, 2904
NmeAIII	GCCGAG	1 cut(s)	2672
NmuCI	GTSAC	7 cut(s)	276, 469, 523, 532, 649, 1193, 2986
NsbI	TGCGCA	1 cut(s)	2841
NspI	RCATGY	2 cut(s)	1660, 2122
NspV	TTCGAA	1 cut(s)	2952
OliI	CACNNNNGTG	1 cut(s)	1376
PaeR7I	CTCGAG	1 cut(s)	1817
PaqCI	CACCTGC	1 cut(s)	3121
PciI	ACATGT	2 cut(s)	1656, 2118
PctI	GAATGC	4 cut(s)	587, 2086, 2278, 2948
PdmI	GAANNNNTTC	1 cut(s)	2784
PfeI	GAWTC	7 cut(s)	1181, 1726, 2162, 2177, 2398, 2483, 2672
PflFI	GACNNNGTC	1 cut(s)	498
PfoI	TCCNGGA	2 cut(s)	1900, 2245
PleI	GAGTC	8 cut(s)	125, 1229, 1834, 2314, 2344, 2599, 2644, 2993
PluTI	GGCGCC	1 cut(s)	607
PpsI	GAGTC	8 cut(s)	125, 1229, 1834, 2314, 2344, 2599, 2644, 2993
PpuMI	RGGWCCY	1 cut(s)	2902
PscI	ACATGT	2 cut(s)	1656, 2118
PshBI	ATTAAT	2 cut(s)	1317, 2817
PsiI	TTATAA	1 cut(s)	1536
Psp124BI	GAGCTC	2 cut(s)	718, 824
Psp1406I	AACGTT	2 cut(s)	1200, 2233
Psp5II	RGGWCCY	1 cut(s)	2902
Psp6I	CCWGG	6 cut(s)	745, 1009, 1276, 1900, 1909, 2962
PspFI	CCCAGC	1 cut(s)	2759
PspGI	CCWGG	6 cut(s)	745, 1009, 1276, 1900, 1909, 2962
PspN4I	GGNNCC	9 cut(s)	443, 605, 751, 894, 973, 2412, 2497, 2884, 2904
PspPI	GGNCC	7 cut(s)	2, 893, 1007, 1523, 2136, 2902, 3052
PspPPI	RGGWCCY	1 cut(s)	2902
PsrI	GAACNNNNNNTAC	2 cut(s)	2139, 2171
PstNI	CAGNNNCTG	1 cut(s)	2675
PsuI	RGATCY	3 cut(s)	1742, 2410, 2688
PsyI	GACNNNGTC	1 cut(s)	498
RsaI	GTAC	5 cut(s)	1628, 1673, 1833, 2148, 2660
RsaNI	GTAC	5 cut(s)	1627, 1672, 1832, 2147, 2659
RseI	CAYNNNNRTG	4 cut(s)	767, 1176, 1376, 2307
SacI	GAGCTC	2 cut(s)	718, 824
Sau96I	GGNCC	7 cut(s)	2, 893, 1007, 1523, 2136, 2902, 3052
SchI	GAGTC	8 cut(s)	125, 1229, 1835, 2314, 2345, 2600, 2644, 2994
ScrFI	CCNGG	9 cut(s)	747, 1011, 1278, 1902, 1911, 1955, 1956, 2247, 2964
SduI	GDGCHC	3 cut(s)	718, 824, 1574
SexAI	ACCWGGT	2 cut(s)	745, 1909
SfaNI	GCATC	5 cut(s)	399, 664, 1012, 1423, 1596
SfoI	GGCGCC	1 cut(s)	605
Sfr274I	CTCGAG	1 cut(s)	1817
SfuI	TTCGAA	1 cut(s)	2952
SinI	GGWCC	4 cut(s)	2, 893, 1523, 2902
SlaI	CTCGAG	1 cut(s)	1817
SmaI	CCCGGG	1 cut(s)	1956
SmiMI	CAYNNNNRTG	4 cut(s)	767, 1176, 1376, 2307
SmlI	CTYRAG	6 cut(s)	263, 434, 959, 1549, 1817, 2429
SmoI	CTYRAG	6 cut(s)	263, 434, 959, 1549, 1817, 2429
SpeI	ACTAGT	1 cut(s)	2344
SsiI	CCGC	7 cut(s)	53, 56, 59, 1249, 1424, 1492, 2207
SspDI	GGCGCC	1 cut(s)	603
SspI	AATATT	1 cut(s)	2018
SspMI	CTAG	2 cut(s)	482, 2345
SstI	GAGCTC	2 cut(s)	718, 824
StyD4I	CCNGG	9 cut(s)	745, 1009, 1276, 1900, 1909, 1953, 1954, 2245, 2962
StyI	CCWWGG	1 cut(s)	3045
TaaI	ACNGT	6 cut(s)	446, 1284, 1375, 1704, 2532, 2562
TaiI	ACGT	5 cut(s)	140, 1203, 1717, 2094, 2236
TaqI	TCGA	7 cut(s)	134, 233, 1297, 1818, 2112, 2778, 2952
TatI	WGTACW	2 cut(s)	1626, 2658
TauI	GCSGC	2 cut(s)	56, 59
TfiI	GAWTC	7 cut(s)	1181, 1726, 2162, 2177, 2398, 2483, 2672
TscAI	CASTG	9 cut(s)	654, 1056, 1198, 1378, 1674, 1852, 2045, 2385, 2467
TseFI	GTSAC	7 cut(s)	276, 469, 523, 532, 649, 1193, 2986
Tsp45I	GTSAC	7 cut(s)	276, 469, 523, 532, 649, 1193, 2986
TspGWI	ACGGA	4 cut(s)	551, 1217, 2175, 2948
TspMI	CCCGGG	1 cut(s)	1954
TspRI	CASTG	9 cut(s)	654, 1056, 1198, 1378, 1674, 1852, 2045, 2385, 2467
Tth111I	GACNNNGTC	1 cut(s)	498
Vha464I	CTTAAG	1 cut(s)	959
VpaK11BI	GGWCC	4 cut(s)	2, 893, 1523, 2902
VspI	ATTAAT	2 cut(s)	1317, 2817
XagI	CCTNNNNNAGG	2 cut(s)	1679, 2309
XapI	RAATTY	7 cut(s)	24, 1061, 1457, 2263, 2330, 2443, 2800
XceI	RCATGY	2 cut(s)	1660, 2122
XhoI	CTCGAG	1 cut(s)	1817
XmaI	CCCGGG	1 cut(s)	1954
XmiI	GTMKAC	1 cut(s)	126
XmnI	GAANNNNTTC	1 cut(s)	2784
XspI	CTAG	2 cut(s)	482, 2345

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.