Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0003227

Physical Location & Seq

Genomic Coordinates Reverse (-)

67540808 .. 67555952

Gene Structure 15145 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG423800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2859 bp

ATGTACGCTGGTAATGAGGGTGGTGCTTATGCCAAAAACAGCTTTGGTAATATATATACAGCTGTTGGTGTATTTGTTCTTGGACGGATGTTACGTGAAGCATGGGGATCTGAAGCAGCAAAAAAGCAAGCAGAGTTCAATGATTTCCTAGAGAGGAACCATATGTGCATATCAATGGAGCTCGTAACTGCAGTCCTAGGAGACCATGGACAGCGTCCAAATGAAGATTTTGTTGTGGTGACAGCAGTCACAGAGCTGGGCAATGGGAAGCCAAAGTTCTACTCAACCCCTGAGGTTATTGCTTTCTGTCGGAAATGGCGCCTTCCGACAAATCATGTATGGCTGTTCTCAACAAGGAAAGCAGTGACATCGTTTTTTGCTGCCTTTGATGCCTTGTGTGAAGAAGGAACTGCAACAACTGTGTGCAGAGCTCTTGATGAAGTTGCAGATATATCTATACCAGGTTCAAAAGATCATATCAAGGAGCAGGGTGAAATCTTAGAGGGTATTGTTGCTCGTATTGTAAGCCATGAGAGCTCAAAGCATATGGTGGAAGTCTTAAAAAATTTCCCTCCTCCCCCAATGGAAGGAGCTGGTCATGATTTGGGACCAAGCCTAAGGGAGATTTGTGCTGCAAATAGGTCGGATGAAACACAGCAAATAAAAGCTCTTCTCAAGGGTGTTGGCTCCTCTTTTTGCCCCGACCATTCAGACTGGCTTGGGGGAGCTGGTGATGCCCAATCTAGAAATGCAGATAAAGCAGTGGTTTCAAAATTTTTACAATCTCACCCTGCTGATTTTTCTACCACCAAATTGCAGGAAGTGATTCGTTTGATGAGAGAAAAGCGTTTTCCTGCTGCCTTTAAATGCTACCATAACTACCACAAACAGGATTCCATGTCCAATGACAACCTTTTCTACAAAATGGTTATTCATGTCCATAGTGACTCTGCATTTCGGCGTTATCAGAAAGAGATGAGGTCGAAGCCAGGACTTTGGCCTTTATATCGAGGTTTTTTCGTTGACATTAATTTGTTCAAGGCAAGCAATGAGAGAGCTGCTGAGATTGCAAAAAACAAAAGTACTGTTGTGGACGATGATGGTGGCACTGGTATGTCCGGAAAACATGGATTGGCTGATGAAGACGCAAACTTAATGATCAAATTGAAATTTCTTACCTATAAGTTGCGTACCTTTTTGATCCGCAATGGTTTGTCAATTCTTTTTAAAGAAGGTCCGGCTGCTTATAAAGCCTATTACTTGAGGCAAATGAAAATATGGGGCACTTCAGCAGGAAAGCAGAGGGAGCTCAGCAAAATGCTTGATGAATGGGCTGTGTACATACGACGGAAATGTGGAAACAAACAGCTGTCGTCATCAGTGTACCTCAGTGAGGCTGAGCCTTTCCTTGAACAATATGCTAAACGGAGCCCACAGAATCAGGCTCTTATAGGATCTGCTGGAAACTTAGTAAGGGCTGAAGACTTCTTGGCCATAGTTGAGGGAGGAAGAGATGAAGAGGGTGATCTTGAGAAGGAGTTTGTACCATCAAGCCCAAGTGCCTCAACCGGGGACATCATTCCAAAGGCTGAGGGTCTGATTGTATTCTTTCCTGGACTACCTGGTTCTGCTAAGTCAGCACTGTGCAAGGAACTACTCAAAGCCCCTGGAGGATTTGGGGATGATAGGCCAGTTCACACTCTTATGGGTGACCTTTTTAAAGGAAGATATTGGCAGAAGGTCGCTGATGAGCGGAAGAAAAAACCGTATTCTATAATGCTTGCAGACAAGAATGCACCAAATGAAGAAGTGTGGAGACAGATTGAAGACATGTGCCACAGAACCAGGGCCAATGCAGTTCCAGTTGTTCCTGATTCTGAAGGCACTGATTCAAATCCGTTTTCTCTTGACGCATTAGCGGTTTTCGTGTATCGTGTGCTTCAACGTTCTAATCATCCGGGAAACCTCGACAAGAATTCTCCAAATGCTGGCTATGTGCTGTTAATGTTCTATCACCTTTATGAGGGCAAAAGTCGTAGTGAGTTTGATGGTGAATTAGTTGAGCGTTTTGGTTCGCTTGTCAAGATACCACTGCTGAAATCTGATAGGAATCCATTACCTGATCCTGTGAAATCAACTCTTGAGGAGGGAATAAATTTATACAAGCTTCACACTAAGAAACATGGAAGAATGGAGTCTACCAAGGGAACCTATGCAAATGAGTGGGCTAAATGGGAGAAACAGTTGCGAGATGTTTTATTTGGCAATTCAGAGTATCTTAATTCTGTTCAGGTTCCTTTTGAGTCTGCTGTTAAGGAAGTATCAGAAGAGCTAAGTAAGATTGCAAAAGGTGAGTATGAGACTCCAGAGTACAGAACTCCAGATTCTGGGAAGAGGAAGATCGGGGCCATTGTTTTTGCTGCCATTAGCCTGCCTATTACCGAAATCAAAGGTTTGCTTGATAATTTGGCTGGGAAAGATAGTAAAGCCGCAGCTTTCCTCAAAGACAAGAATTTGGAGAACCAGATTAATAAGGCCCATGTTACTCTTGCACACAAGAGAAGTCATGGTGTTACTGCGGTGGCTAATTACGGCATATTCCTACACAAACAGGTCCCTGTGGATATAACTGCACTGCTCTTCACGGATAAAATGGCTGCGTTTGAAGCATGCCCTGGCTCTGTTGAAGGTGAAAGAGTCGTCTCCAAAAACGAGTGGCCACATGTTACCTTATGGACTGCGGAGGGTGTTGCAGCTAAGGAGGCCAACTTGTTACATAATTTGCATTTAGAAGGGAAGGCTACTCGTATTGCAATTGACCCACCTGCCACCATTCAGGGGCCGCTGGAGTTTTACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000278 GO:0000281 GO:0000394 GO:0000910 GO:0003006 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003824 GO:0003972 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006388 GO:0006396 GO:0006399 GO:0006725 GO:0006807 GO:0007049 GO:0007275 GO:0008033 GO:0008150 GO:0008152 GO:0008356 GO:0008380 GO:0008452 GO:0009790 GO:0009791 GO:0009793 GO:0009966 GO:0009987 GO:0010069 GO:0010070 GO:0010154 GO:0010467 GO:0010646 GO:0010928 GO:0016070 GO:0016874 GO:0016886 GO:0022402 GO:0022414 GO:0023051 GO:0032501 GO:0032502 GO:0034470 GO:0034641 GO:0034660 GO:0042245 GO:0043170 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0048316 GO:0048583 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0051301 GO:0061458 GO:0061640 GO:0065007 GO:0071704 GO:0090304 GO:0097159 GO:0140098 GO:1901360 GO:1901363 GO:1903047

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

tRNA_lig_CPD

Protein Analysis

952

Amino Acids

105.95

Weight (kDa)

7.86

Isoelectric Point (pI)

36.6

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003227)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G07910 AT1G07910
fragaria_vesca	FvH4_3g33360 FvH4_3g33360 FvH4_3g33360 FvH4_3g33360 FvH4_3g33360 FvH4_3g33360 FvH4_3g33360 FvH4_3g33360 FvH4_4g02320
malus_domestica	MD03G1112400.v1.1 MD11G1129800.v1.1
prunus_persica	Prupe.6G094700_v2.0.a1
pyrus_communis	pycom11g10750 pycom11g10760
rosa_chinensis	RchiOBHm_Chr4g0389641 RchiOBHm_Chr5g0060751
rosa_laevigata	RLG00000009964 RLG00000035390
rosa_multiflora	Rmu_co8520825.1_g000001 Rmu_sc0006568.1_g000004 Rmu_sc0007419.1_g000006
rosa_roxburghii	Rroxscaffold_1G00019960 Rroxscaffold_5G00335630
rosa_rugosa	Rorug03G0324600 Rorug05G0333400
rosa_samantha	Rh4AG029200 Rh4BG022400 Rh4CG031200 Rh4DG022900 Rh5AG396400 Rh5BG408600 Rh5CG433200 Rh5DG423800
rosa_wichuraiana	Rw4G002180 Rw5G037370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1248
AarI	CACCTGC	1 cut(s)	2833
Acc36I	ACCTGC	1 cut(s)	2833
AccB1I	GGYRCC	1 cut(s)	318
AccB7I	CCANNNNNTGG	2 cut(s)	1988, 2387
AccBSI	CCGCTC	1 cut(s)	1753
AccI	GTMKAC	1 cut(s)	2198
AccIII	TCCGGA	1 cut(s)	1118
AciI	CCGC	7 cut(s)	1204, 1753, 1919, 2490, 2579, 2741, 2843
AclI	AACGTT	1 cut(s)	1945
AclWI	GGATC	4 cut(s)	115, 1195, 1462, 2117
AcoI	YGGCCR	2 cut(s)	1491, 2717
AcsI	RAATTY	6 cut(s)	565, 773, 1169, 1975, 2155, 2512
AcuI	CTGAAG	4 cut(s)	132, 1272, 1500, 1899
AcyI	GRCGYC	1 cut(s)	319
AfaI	GTAC	7 cut(s)	5, 1084, 1192, 1340, 1385, 1545, 2372
AfiI	CCNNNNNNNGG	8 cut(s)	587, 889, 1393, 1569, 1988, 2023, 2387, 2838
AflIII	ACRYGT	2 cut(s)	1830, 2722
AjnI	CCWGG	7 cut(s)	460, 988, 1612, 1621, 1666, 1844, 2674
Alw21I	GWGCWC	4 cut(s)	183, 433, 539, 1311
Alw26I	GTCTC	4 cut(s)	195, 1810, 2354, 2707
AlwI	GGATC	4 cut(s)	115, 1195, 1462, 2117
AlwNI	CAGNNNCTG	1 cut(s)	2387
Aor13HI	TCCGGA	1 cut(s)	1118
AoxI	GGCC	9 cut(s)	998, 1491, 1688, 1848, 2406, 2535, 2717, 2763, 2840
ApoI	RAATTY	6 cut(s)	565, 773, 1169, 1975, 2155, 2512
AseI	ATTAAT	2 cut(s)	1029, 2529
Asp700I	GAANNNNTTC	1 cut(s)	825
AspA2I	CCTAGG	1 cut(s)	196
AspLEI	GCGC	1 cut(s)	321
AspS9I	GGNCC	7 cut(s)	608, 1235, 1848, 2406, 2536, 2614, 2840
AsuC2I	CCSGG	2 cut(s)	1570, 1959
AvaII	GGWCC	3 cut(s)	608, 1235, 2614
AvrII	CCTAGG	1 cut(s)	196
AxyI	CCTNAGG	2 cut(s)	291, 617
BaeGI	GKGCMC	1 cut(s)	1286
BalI	TGGCCA	2 cut(s)	1493, 2719
BanI	GGYRCC	1 cut(s)	318
BanII	GRGCYC	5 cut(s)	183, 433, 539, 1311, 1433
BbsI	GAAGAC	3 cut(s)	1149, 1488, 1833
Bbv12I	GWGCWC	4 cut(s)	183, 433, 539, 1311
BbvCI	CCTCAGC	1 cut(s)	1590
BccI	CCATC	3 cut(s)	1094, 1555, 2042
BceAI	ACGGC	1 cut(s)	2608
BcgI	CGANNNNNNTGC	4 cut(s)	351, 385, 624, 658
BciT130I	CCWGG	7 cut(s)	462, 990, 1614, 1623, 1668, 1846, 2676
BclI	TGATCA	1 cut(s)	1158
BcnI	CCSGG	2 cut(s)	1570, 1959
BcoDI	GTCTC	4 cut(s)	195, 1810, 2354, 2707
BfaI	CTAG	3 cut(s)	149, 197, 744
BfmI	CTRYAG	1 cut(s)	189
BfoI	RGCGCY	1 cut(s)	322
BfuAI	ACCTGC	1 cut(s)	2833
BlnI	CCTAGG	1 cut(s)	196
BlpI	GCTNAGC	2 cut(s)	1310, 1398
BmcAI	AGTACT	1 cut(s)	1084
Bme1390I	CCNGG	9 cut(s)	462, 990, 1570, 1614, 1623, 1668, 1846, 1959, 2676
Bme18I	GGWCC	3 cut(s)	608, 1235, 2614
BmgT120I	GGNCC	7 cut(s)	608, 1235, 1848, 2406, 2536, 2614, 2840
BmrFI	CCNGG	9 cut(s)	462, 990, 1570, 1614, 1623, 1668, 1846, 1959, 2676
BmsI	GCATC	2 cut(s)	379, 724
BoxI	GACNNNNGTC	1 cut(s)	245
BpiI	GAAGAC	3 cut(s)	1149, 1488, 1833
BpmI	CTGGAG	3 cut(s)	1689, 2349, 2364
Bpu10I	CCTNAGC	2 cut(s)	1590, 2757
Bpu1102I	GCTNAGC	2 cut(s)	1310, 1398
BpuEI	CTTGAG	4 cut(s)	659, 1282, 1550, 2162
BpuMI	CCSGG	2 cut(s)	1570, 1959
BsaAI	YACGTR	1 cut(s)	95
BsaBI	GATNNNNATC	2 cut(s)	1893, 2109
BsaHI	GRCGYC	1 cut(s)	319
BsaI	GGTCTC	1 cut(s)	195
BsaJI	CCNNGG	7 cut(s)	196, 205, 1569, 1666, 1845, 2202, 2674
BsaWI	WCCGGW	1 cut(s)	1118
BsaXI	ACNNNNNCTCC	2 cut(s)	2228, 2258
Bsc4I	CCNNNNNNNGG	8 cut(s)	587, 889, 1393, 1569, 1988, 2023, 2387, 2838
Bse1I	ACTGG	4 cut(s)	719, 1114, 1691, 1862
Bse21I	CCTNAGG	2 cut(s)	291, 617
Bse3DI	GCAATG	3 cut(s)	268, 1054, 1213
Bse8I	GATNNNNATC	2 cut(s)	1893, 2109
BseAI	TCCGGA	1 cut(s)	1118
BseBI	CCWGG	7 cut(s)	462, 990, 1614, 1623, 1668, 1846, 2676
BseDI	CCNNGG	7 cut(s)	196, 205, 1569, 1666, 1845, 2202, 2674
BseGI	GGATG	4 cut(s)	93, 652, 1687, 1954
BseJI	GATNNNNATC	2 cut(s)	1893, 2109
BseLI	CCNNNNNNNGG	8 cut(s)	587, 889, 1393, 1569, 1988, 2023, 2387, 2838
BseMI	GCAATG	3 cut(s)	268, 1054, 1213
BseMII	CTCAG	6 cut(s)	282, 1053, 1324, 1389, 1402, 1581
BseNI	ACTGG	4 cut(s)	719, 1114, 1691, 1862
BseRI	GAGGAG	3 cut(s)	564, 679, 2159
BseSI	GKGCMC	1 cut(s)	1286
BseYI	CCCAGC	2 cut(s)	256, 2471
BsgI	GTGCAG	2 cut(s)	445, 2616
BshFI	GGCC	9 cut(s)	1000, 1493, 1690, 1850, 2408, 2537, 2719, 2765, 2842
BshNI	GGYRCC	1 cut(s)	318
BsiHKAI	GWGCWC	4 cut(s)	183, 433, 539, 1311
BsiSI	CCGG	4 cut(s)	1119, 1238, 1569, 1958
BslFI	GGGAC	3 cut(s)	621, 1586, 2600
BslI	CCNNNNNNNGG	8 cut(s)	587, 889, 1393, 1569, 1988, 2023, 2387, 2838
BsmAI	GTCTC	4 cut(s)	195, 1810, 2354, 2707
BsmBI	CGTCTC	1 cut(s)	2707
BsmFI	GGGAC	3 cut(s)	621, 1586, 2600
BsmI	GAATGC	1 cut(s)	1798
BsnI	GGCC	9 cut(s)	1000, 1493, 1690, 1850, 2408, 2537, 2719, 2765, 2842
Bso31I	GGTCTC	1 cut(s)	195
Bsp1286I	GDGCHC	6 cut(s)	183, 433, 539, 1286, 1311, 1433
Bsp13I	TCCGGA	1 cut(s)	1118
Bsp1407I	TGTACA	1 cut(s)	1338
Bsp143I	GATC	8 cut(s)	107, 472, 1158, 1200, 1454, 1525, 2122, 2400
Bsp1720I	GCTNAGC	2 cut(s)	1310, 1398
Bsp19I	CCATGG	1 cut(s)	205
BspACI	CCGC	7 cut(s)	1204, 1753, 1919, 2490, 2579, 2741, 2843
BspANI	GGCC	9 cut(s)	1000, 1493, 1690, 1850, 2408, 2537, 2719, 2765, 2842
BspCNI	CTCAG	6 cut(s)	283, 1054, 1323, 1390, 1401, 1582
BspEI	TCCGGA	1 cut(s)	1118
BspHI	TCATGA	1 cut(s)	598
BspMAI	CTGCAG	1 cut(s)	193
BspMI	ACCTGC	1 cut(s)	2833
BspPI	GGATC	4 cut(s)	115, 1195, 1462, 2117
BspQI	GCTCTTC	3 cut(s)	675, 2322, 2645
BspT107I	GGYRCC	1 cut(s)	318
BspTNI	GGTCTC	1 cut(s)	195
BsrBI	CCGCTC	1 cut(s)	1753
BsrDI	GCAATG	3 cut(s)	268, 1054, 1213
BsrGI	TGTACA	1 cut(s)	1338
BsrI	ACTGG	4 cut(s)	719, 1114, 1691, 1862
BssECI	CCNNGG	7 cut(s)	196, 205, 1569, 1666, 1845, 2202, 2674
BssMI	GATC	8 cut(s)	107, 472, 1158, 1200, 1454, 1525, 2122, 2400
BssNI	GRCGYC	1 cut(s)	319
BssT1I	CCWWGG	3 cut(s)	196, 205, 2202
Bst2UI	CCWGG	7 cut(s)	462, 990, 1614, 1623, 1668, 1846, 2676
Bst4CI	ACNGT	5 cut(s)	421, 1087, 1644, 1767, 2244
Bst6I	CTCTTC	6 cut(s)	675, 1504, 1512, 2322, 2387, 2645
BstACI	GRCGYC	1 cut(s)	319
BstAUI	TGTACA	1 cut(s)	1338
BstBAI	YACGTR	1 cut(s)	95
BstC8I	GCNNGC	6 cut(s)	129, 1045, 1782, 1990, 2432, 2671
BstDSI	CCRYGG	1 cut(s)	205
BstEII	GGTNACC	1 cut(s)	1709
BstENI	CCTNNNNNAGG	2 cut(s)	1391, 2021
BstF5I	GGATG	4 cut(s)	93, 652, 1687, 1954
BstH2I	RGCGCY	1 cut(s)	322
BstHHI	GCGC	1 cut(s)	321
BstKTI	GATC	8 cut(s)	110, 475, 1161, 1203, 1457, 1528, 2125, 2403
BstMAI	GTCTC	4 cut(s)	195, 1810, 2354, 2707
BstMBI	GATC	8 cut(s)	107, 472, 1158, 1200, 1454, 1525, 2122, 2400
BstNI	CCWGG	7 cut(s)	462, 990, 1614, 1623, 1668, 1846, 2676
BstNSI	RCATGY	3 cut(s)	1834, 2673, 2726
BstPAI	GACNNNNGTC	1 cut(s)	245
BstPI	GGTNACC	1 cut(s)	1709
BstSCI	CCNGG	9 cut(s)	460, 988, 1568, 1612, 1621, 1666, 1844, 1957, 2674
BstSFI	CTRYAG	1 cut(s)	189
BstSLI	GKGCMC	1 cut(s)	1286
BstV2I	GAAGAC	3 cut(s)	1149, 1488, 1833
BstX2I	RGATCY	2 cut(s)	107, 1454
BstXI	CCANNNNNNTGG	1 cut(s)	996
BstYI	RGATCY	2 cut(s)	107, 1454
Bsu36I	CCTNAGG	2 cut(s)	291, 617
BsuRI	GGCC	9 cut(s)	1000, 1493, 1690, 1850, 2408, 2537, 2719, 2765, 2842
BtgI	CCRYGG	1 cut(s)	205
BtsCI	GGATG	4 cut(s)	93, 652, 1687, 1954
BtsI	GCAGTG	4 cut(s)	369, 768, 2090, 2633
BtsIMutI	CAGTG	9 cut(s)	369, 768, 1107, 1386, 1396, 1640, 1884, 2090, 2633
BveI	ACCTGC	1 cut(s)	2833
Cac8I	GCNNGC	6 cut(s)	129, 1045, 1782, 1990, 2432, 2671
CaiI	CAGNNNCTG	1 cut(s)	2387
CciI	TCATGA	1 cut(s)	598
CfoI	GCGC	1 cut(s)	321
Cfr13I	GGNCC	7 cut(s)	608, 1235, 1848, 2406, 2536, 2614, 2840
CseI	GACGC	3 cut(s)	203, 1154, 1919
CsiI	ACCWGGT	2 cut(s)	460, 1621
Csp6I	GTAC	7 cut(s)	4, 1083, 1191, 1339, 1384, 1544, 2371
CviQI	GTAC	7 cut(s)	4, 1083, 1191, 1339, 1384, 1544, 2371
DinI	GGCGCC	1 cut(s)	320
DpnI	GATC	8 cut(s)	109, 474, 1160, 1202, 1456, 1527, 2124, 2402
DpnII	GATC	8 cut(s)	107, 472, 1158, 1200, 1454, 1525, 2122, 2400
DraI	TTTAAA	3 cut(s)	865, 1228, 1720
EaeI	YGGCCR	2 cut(s)	1491, 2717
Eam1104I	CTCTTC	6 cut(s)	675, 1504, 1512, 2322, 2387, 2645
EarI	CTCTTC	6 cut(s)	675, 1504, 1512, 2322, 2387, 2645
Ecl136II	GAGCTC	4 cut(s)	181, 431, 537, 1309
Eco130I	CCWWGG	3 cut(s)	196, 205, 2202
Eco24I	GRGCYC	5 cut(s)	183, 433, 539, 1311, 1433
Eco31I	GGTCTC	1 cut(s)	195
Eco47I	GGWCC	3 cut(s)	608, 1235, 2614
Eco53kI	GAGCTC	4 cut(s)	181, 431, 537, 1309
Eco57I	CTGAAG	4 cut(s)	132, 1272, 1500, 1899
Eco81I	CCTNAGG	2 cut(s)	291, 617
Eco91I	GGTNACC	1 cut(s)	1709
EcoICRI	GAGCTC	4 cut(s)	181, 431, 537, 1309
EcoNI	CCTNNNNNAGG	2 cut(s)	1391, 2021
EcoO109I	RGGNCCY	1 cut(s)	2614
EcoO65I	GGTNACC	1 cut(s)	1709
EcoRI	GAATTC	1 cut(s)	1975
EcoRII	CCWGG	7 cut(s)	460, 988, 1612, 1621, 1666, 1844, 2674
EcoT14I	CCWWGG	3 cut(s)	196, 205, 2202
EcoT38I	GRGCYC	5 cut(s)	183, 433, 539, 1311, 1433
EgeI	GGCGCC	1 cut(s)	320
EheI	GGCGCC	1 cut(s)	320
ErhI	CCWWGG	3 cut(s)	196, 205, 2202
Esp3I	CGTCTC	1 cut(s)	2707
FalI	AAGNNNNNCTT	2 cut(s)	2442, 2474
FaqI	GGGAC	3 cut(s)	621, 1586, 2600
FauNDI	CATATG	2 cut(s)	162, 546
FbaI	TGATCA	1 cut(s)	1158
FblI	GTMKAC	1 cut(s)	2198
FokI	GGATG	4 cut(s)	100, 659, 1694, 1941
FriOI	GRGCYC	5 cut(s)	183, 433, 539, 1311, 1433
FspBI	CTAG	3 cut(s)	149, 197, 744
GlaI	GCGC	1 cut(s)	320
GsaI	CCCAGC	2 cut(s)	260, 2475
GsuI	CTGGAG	3 cut(s)	1689, 2349, 2364
HaeII	RGCGCY	1 cut(s)	322
HaeIII	GGCC	9 cut(s)	1000, 1493, 1690, 1850, 2408, 2537, 2719, 2765, 2842
HapII	CCGG	4 cut(s)	1119, 1238, 1569, 1958
HgaI	GACGC	3 cut(s)	203, 1154, 1919
HhaI	GCGC	1 cut(s)	321
Hin1I	GRCGYC	1 cut(s)	319
Hin6I	GCGC	1 cut(s)	319
HinP1I	GCGC	1 cut(s)	319
HincII	GTYRAC	1 cut(s)	1024
HindII	GTYRAC	1 cut(s)	1024
HindIII	AAGCTT	1 cut(s)	2165
HpaII	CCGG	4 cut(s)	1119, 1238, 1569, 1958
Hpy166II	GTNNAC	6 cut(s)	1024, 1093, 1339, 1384, 1696, 2199
Hpy8I	GTNNAC	6 cut(s)	1024, 1093, 1339, 1384, 1696, 2199
Hpy99I	CGWCG	1 cut(s)	1350
HpyCH4III	ACNGT	5 cut(s)	421, 1087, 1644, 1767, 2244
HpyCH4IV	ACGT	2 cut(s)	94, 1945
HpySE526I	ACGT	2 cut(s)	94, 1945
Hsp92I	GRCGYC	1 cut(s)	319
HspAI	GCGC	1 cut(s)	319
KasI	GGCGCC	1 cut(s)	318
Kpn2I	TCCGGA	1 cut(s)	1118
Ksp22I	TGATCA	1 cut(s)	1158
Kzo9I	GATC	8 cut(s)	107, 472, 1158, 1200, 1454, 1525, 2122, 2400
LguI	GCTCTTC	3 cut(s)	675, 2322, 2645
LmnI	GCTCC	7 cut(s)	178, 484, 590, 692, 725, 1306, 1428
LweI	GCATC	2 cut(s)	379, 724
MabI	ACCWGGT	2 cut(s)	460, 1621
MaeI	CTAG	3 cut(s)	149, 197, 744
MaeII	ACGT	2 cut(s)	94, 1945
MalI	GATC	8 cut(s)	109, 474, 1160, 1202, 1456, 1527, 2124, 2402
MbiI	CCGCTC	1 cut(s)	1753
MboI	GATC	8 cut(s)	107, 472, 1158, 1200, 1454, 1525, 2122, 2400
MfeI	CAATTG	1 cut(s)	2814
MflI	RGATCY	2 cut(s)	107, 1454
MhlI	GDGCHC	6 cut(s)	183, 433, 539, 1286, 1311, 1433
MlsI	TGGCCA	2 cut(s)	1493, 2719
MluNI	TGGCCA	2 cut(s)	1493, 2719
Mly113I	GGCGCC	1 cut(s)	319
MlyI	GAGTC	5 cut(s)	941, 2204, 2312, 2356, 2706
MmeI	TCCRAC	3 cut(s)	290, 350, 624
Mox20I	TGGCCA	2 cut(s)	1493, 2719
MroI	TCCGGA	1 cut(s)	1118
MroXI	GAANNNNTTC	1 cut(s)	825
MscI	TGGCCA	2 cut(s)	1493, 2719
MslI	CAYNNNNRTG	4 cut(s)	173, 1112, 1703, 2019
Msp20I	TGGCCA	2 cut(s)	1493, 2719
MspA1I	CMGCKG	3 cut(s)	62, 1369, 2845
MspI	CCGG	4 cut(s)	1119, 1238, 1569, 1958
MspR9I	CCNGG	9 cut(s)	462, 990, 1570, 1614, 1623, 1668, 1846, 1959, 2676
MunI	CAATTG	1 cut(s)	2814
Mva1269I	GAATGC	1 cut(s)	1798
MvaI	CCWGG	7 cut(s)	462, 990, 1614, 1623, 1668, 1846, 2676
NarI	GGCGCC	1 cut(s)	319
NciI	CCSGG	2 cut(s)	1570, 1959
NcoI	CCATGG	1 cut(s)	205
NdeI	CATATG	2 cut(s)	162, 546
NdeII	GATC	8 cut(s)	107, 472, 1158, 1200, 1454, 1525, 2122, 2400
NmuCI	GTSAC	5 cut(s)	238, 247, 364, 944, 1709
NspI	RCATGY	3 cut(s)	1834, 2673, 2726
PaeI	GCATGC	1 cut(s)	2673
PagI	TCATGA	1 cut(s)	598
PaqCI	CACCTGC	1 cut(s)	2833
PciI	ACATGT	2 cut(s)	1830, 2722
PciSI	GCTCTTC	3 cut(s)	675, 2322, 2645
PcsI	WCGNNNNNNNCGW	1 cut(s)	91
PctI	GAATGC	1 cut(s)	1798
PdmI	GAANNNNTTC	1 cut(s)	825
PfeI	GAWTC	7 cut(s)	826, 893, 1438, 1874, 1889, 2110, 2384
PflFI	GACNNNGTC	1 cut(s)	213
PflMI	CCANNNNNTGG	2 cut(s)	1988, 2387
PfoI	TCCNGGA	2 cut(s)	1612, 1957
PleI	GAGTC	5 cut(s)	941, 2203, 2311, 2356, 2705
PluTI	GGCGCC	1 cut(s)	322
PpsI	GAGTC	5 cut(s)	941, 2203, 2311, 2356, 2705
Ppu21I	YACGTR	1 cut(s)	95
PpuMI	RGGWCCY	1 cut(s)	2614
PscI	ACATGT	2 cut(s)	1830, 2722
PshAI	GACNNNNGTC	1 cut(s)	245
PshBI	ATTAAT	2 cut(s)	1029, 2529
PsiI	TTATAA	1 cut(s)	1248
Psp124BI	GAGCTC	4 cut(s)	183, 433, 539, 1311
Psp1406I	AACGTT	1 cut(s)	1945
Psp5II	RGGWCCY	1 cut(s)	2614
Psp6I	CCWGG	7 cut(s)	460, 988, 1612, 1621, 1666, 1844, 2674
PspEI	GGTNACC	1 cut(s)	1709
PspFI	CCCAGC	2 cut(s)	256, 2471
PspGI	CCWGG	7 cut(s)	460, 988, 1612, 1621, 1666, 1844, 2674
PspPI	GGNCC	7 cut(s)	608, 1235, 1848, 2406, 2536, 2614, 2840
PspPPI	RGGWCCY	1 cut(s)	2614
PstI	CTGCAG	1 cut(s)	193
PstNI	CAGNNNCTG	1 cut(s)	2387
PsuI	RGATCY	2 cut(s)	107, 1454
PsyI	GACNNNGTC	1 cut(s)	213
PvuII	CAGCTG	2 cut(s)	62, 1369
RsaI	GTAC	7 cut(s)	5, 1084, 1192, 1340, 1385, 1545, 2372
RsaNI	GTAC	7 cut(s)	4, 1083, 1191, 1339, 1384, 1544, 2371
RseI	CAYNNNNRTG	4 cut(s)	173, 1112, 1703, 2019
SacI	GAGCTC	4 cut(s)	183, 433, 539, 1311
SapI	GCTCTTC	3 cut(s)	675, 2322, 2645
Sau3AI	GATC	8 cut(s)	107, 472, 1158, 1200, 1454, 1525, 2122, 2400
Sau96I	GGNCC	7 cut(s)	608, 1235, 1848, 2406, 2536, 2614, 2840
ScaI	AGTACT	1 cut(s)	1084
SchI	GAGTC	5 cut(s)	941, 2204, 2312, 2356, 2706
ScrFI	CCNGG	9 cut(s)	462, 990, 1570, 1614, 1623, 1668, 1846, 1959, 2676
SduI	GDGCHC	6 cut(s)	183, 433, 539, 1286, 1311, 1433
SexAI	ACCWGGT	2 cut(s)	460, 1621
SfaNI	GCATC	2 cut(s)	379, 724
SfcI	CTRYAG	1 cut(s)	189
SfoI	GGCGCC	1 cut(s)	320
SinI	GGWCC	3 cut(s)	608, 1235, 2614
SmiMI	CAYNNNNRTG	4 cut(s)	173, 1112, 1703, 2019
SmlI	CTYRAG	4 cut(s)	674, 1261, 1529, 2141
SmoI	CTYRAG	4 cut(s)	674, 1261, 1529, 2141
SphI	GCATGC	1 cut(s)	2673
SsiI	CCGC	7 cut(s)	1204, 1753, 1919, 2490, 2579, 2741, 2843
SspDI	GGCGCC	1 cut(s)	318
SspMI	CTAG	3 cut(s)	149, 197, 744
SstI	GAGCTC	4 cut(s)	183, 433, 539, 1311
StyD4I	CCNGG	9 cut(s)	460, 988, 1568, 1612, 1621, 1666, 1844, 1957, 2674
StyI	CCWWGG	3 cut(s)	196, 205, 2202
TaaI	ACNGT	5 cut(s)	421, 1087, 1644, 1767, 2244
TaiI	ACGT	2 cut(s)	97, 1948
TaqI	TCGA	3 cut(s)	983, 1009, 1968
TatI	WGTACW	3 cut(s)	1082, 1338, 2370
TauI	GCSGC	2 cut(s)	2492, 2845
TfiI	GAWTC	7 cut(s)	826, 893, 1438, 1874, 1889, 2110, 2384
TscAI	CASTG	9 cut(s)	369, 768, 1114, 1386, 1396, 1647, 1891, 2097, 2640
TseFI	GTSAC	5 cut(s)	238, 247, 364, 944, 1709
Tsp45I	GTSAC	5 cut(s)	238, 247, 364, 944, 1709
TspDTI	ATGAA	9 cut(s)	237, 453, 663, 923, 1155, 1286, 1341, 1530, 1818
TspGWI	ACGGA	5 cut(s)	100, 1363, 1441, 1887, 2660
TspRI	CASTG	9 cut(s)	369, 768, 1114, 1386, 1396, 1647, 1891, 2097, 2640
Tth111I	GACNNNGTC	1 cut(s)	213
Van91I	CCANNNNNTGG	2 cut(s)	1988, 2387
VpaK11BI	GGWCC	3 cut(s)	608, 1235, 2614
VspI	ATTAAT	2 cut(s)	1029, 2529
XagI	CCTNNNNNAGG	2 cut(s)	1391, 2021
XapI	RAATTY	6 cut(s)	565, 773, 1169, 1975, 2155, 2512
XbaI	TCTAGA	1 cut(s)	743
XceI	RCATGY	3 cut(s)	1834, 2673, 2726
XmaJI	CCTAGG	1 cut(s)	196
XmiI	GTMKAC	1 cut(s)	2198
XmnI	GAANNNNTTC	1 cut(s)	825
XspI	CTAG	3 cut(s)	149, 197, 744
ZrmI	AGTACT	1 cut(s)	1084

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.