Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0003227

Physical Location & Seq

Genomic Coordinates Reverse (-)

61269244 .. 61273330

Gene Structure 4087 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000009964

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3279 bp

ATGAAGAGGAGCTTCGCCGGGTGCCGGCGTGGTAATAGTTGCTTTTTATTTGCGAGGTCATCTGTTCGAGCTACGCTCAGGAGCTTCAATTTTTTCTCCCTCCTCCTTTCTCAATCCGATTACGAAAGCAAGGGTCCAGTAAAAGGTCAAAAGGGAATCTGGAAAAGCCGAAATCTTTTTGCTGCGGCGGCGGTGGAAGAAAGAACTTCTGGTGCAAGCAACTTGTTGATGGATAATTTCATGGAAAAGTTTAGTGTAGATGACTCGACGTATGCTCAGGTGCAAGTCCGAGCTACTTTCTATCCCAAGTTTGAGAATGAGAAGTCCGATCAGGAGGTTAGGACAAGGATGATAGAGATGGTATCGAAGGGGTTGGCTACATTGGAGGTTTCCCTCAAGCACTCGGGGTCACTTTTTATGTATGCTGGTAGTGAGGGTGGCGCGTATGCGAAAAATAGCTTTGGGAATATATATACTGCTGTGGGTGTGTTTGTTCTGGGGAGGATGTTTCGTGAGGCGTGGGGATCGGAAGCACCGAGGATGCAAGCAGAGTTTAATGATTTTCTTGAGAGGAACCGTATGTGTATATCAATGGAACTTGTGACTGCTGTTCTAGGTGATCATGGACAGCGTCCGAAAGAAGATTTTGTTGTGGTCACGGCTGTCACGGAGTTGGGCAATGGGAAGCCAAAGTTCTACTCAACTCCCGAGATTATTGCATTCTGTCGGAATTGGCGCCTGCCCACAAATCATGTATGGCTGTTCTCAACAAGGAAAGCAGTGACATCTTTTTTTGCTGCCTTTGATGCCCTGTCTGAAGAAGGAACTGCAACAAGTGTAAGCAGAGCTCTTGATGAAGTTGCAGATATATCTATACCAGGTTCGAAAGATCACATCAAGGTGCAAGGTGAAATCTTAGAGGGTATTGTTGCTCGTATTGTAAGCCATGAGAGCTCAAAGCATATGGAGAAAGTCTTAAAAGATTTCCCTCCTCCACCAATGGAAGGAGCTGGTCTTGATTTGGGACCAAGCCTAAGGGAGATTTGCGCTGCAAATAGGTCTGATGAAACACAGCAAATAAAAGCACTTCTTAAGGGTGTCGGCTCCTCTTTTTGTCCTGACCATTCAGACTGGCTTGGGCGTGGAGCTGGTGATGCACATTCTAAAAATGCAGATCAATCAGTGCTATCAAAATTTTTAAAATCTCATCCTGCTGATTTTTCTACCACCAAATTGCAGGAAGTGGTTTGTTTGATGAGAGAAAAGCGTTTACCTGCTGCCTTTAAATGCTACCAGAACTACCACAAGCATGATTCCATGTCTAGTGACAACGTTTTCTATAAAATGGTCATTCATGTCCGTAGCGACTCTGCATTTCAGCGGTATCAGAAAGAGATGAAGTCAAAGCCAGGACTGTGGCCTTTATATCGAGGTTTTTTCATCGACATTAATTTGTTCAAGGCAAACAAGGAGAGAGCTGCTGAGATTGCAAAAAACAAAAGCACTGTTGTGGACATAAATGGGGGCTGTGGTATGTCAGGAAAACATGGATTGGCGGAAGAAGATGCAAACTTAATGATCAAATTGAAATTTCTTACATATAAGCTGCGAACTTTTTTGATCCGCAATGGTTTATCAACTCTATTTAAACAAGGTCCGGCTGCTTATAAAGCCTATTACTTGAGGCAAATGAAAATATGGGGCACTTCAGCAGGAAAGCAGAGGGAACTCAGCAAGATGCTTGATGAATGGGCTGTGTACATACGAAGGAAATGTGGAAACAAACACATGTCGTCATCAGTGTACCTCAGCGAGGCTGAGCCTTTCCTTGAACAGTATGCAAAACGTAGCCCACAGAATCAGGCTCTTATAGGATCTGCTGGAAACTTGGTAAATGCTGAAAACTTCTTGGCCATAGTTGAGGGAGGAAGAGATGAAGAGGGTGATCTCGAGAAGGAGTCTGTACCATCAAGCCCCAGTGCCTCAGTTGCAGACACCATTCCAAAGGCTGAGGGTCTGATTGTATTCTTTCCTGGACTACCTGGTTCTGCCAAGTCAGCACTATGCAAGGAACTACTCAAAGCCCCGGGAGGATTTGGGGATGATCGGCCAGTTCAAAGTCTAATGGGTGATCTTGTTAAAGGAAAATATTGGCAGAAGGTCGCTGATCAGTGCAGGAAAAAACCATATGCTATAATGCTCGCAGACAAGAATGCACCAAACGTAGAAGTGTGGAGACAGGTCGAAGACATGTGCCACAGAACTAGGGCCTCTGCTGTACCAGTTGTTCCTGATTCTGAAGGAACGGAATCAAATCCGTTTTCTCTTGACGCATTAGCGGTTTTCATGTTTCGTGTGCTTCAACGTGCTAATCATCCGGGAAACCTTGACAAAAATTCACCGAATGCTGGCTATGTTCTGCTAATGTTCTATCACCTTTATGAGGGCAAGACTCGGAGAGAATTTGAGTCTGAACTAGTTGAGCGTTTTGGTTCACTTGTCAAAATACCACTGCTGACATCGGAGAGGAATCCATTACCGGATCCTGTGAAATCAACTCTTGAGGATGGAATAAATTTATACAACCTTCACACTGATAGACATGGAAGATGGGATTCAAGCAGGGGAGCCTACACAAAGGAATGGGCTAAATGGGAGAAACAGTTGCGAGAGATTTTGTTTGGCAATGCACGGTATTTTAATTCTGTTCAGGTTCCCTTTGAGTCTTCTGTTAAGGAAGTATCAGAACAGCTAAGAAAGATTGCAAAAGGTGAGTATAAGACTCCAGAGTACAGGACTTCAGATTCTGGGAAGAGGAAGATCTCGGCCATTACATTTGCTGCCATTAACCTGCCTATTACCGATATCAAAGGTTTGCTTGATAATTTGGCTGGGAAAGATAGTAAAGTCGAAGCTTTTCTAAAAGACAAGAATTTGGAGAACAGCATTAATAAGGCTCATGTTACTCTTGCGCACAAGAGAAGTCATGGTGTAACTGCCGTGGCTAATTATGGCACCTTCCTACACAAACAGGTCCCTGTGGATATAACTGCACTTCTCTTCACGGATAAAATGGCTGCATTCGAAGCCTGCCCTGGCTCTGTCGAAGGTGAAAGAGTCACCCCCAAAAATGAATGGCCTCATGTTACCTTATGGACAGCAGAGGGTGTTTTAGCCAAGGAGGCCAACTTGTTAAGCAATTTGCATTTAGAGGGCAAGGCTACCCGTATTGCGATTGACCCACCTGCCACCATTCATGGGACGCTGGAGTTTTACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000278 GO:0000281 GO:0000394 GO:0000910 GO:0003006 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003824 GO:0003972 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006388 GO:0006396 GO:0006399 GO:0006725 GO:0006807 GO:0007049 GO:0007275 GO:0008033 GO:0008150 GO:0008152 GO:0008356 GO:0008380 GO:0008452 GO:0009790 GO:0009791 GO:0009793 GO:0009966 GO:0009987 GO:0010069 GO:0010070 GO:0010154 GO:0010467 GO:0010646 GO:0010928 GO:0016070 GO:0016874 GO:0016886 GO:0022402 GO:0022414 GO:0023051 GO:0032501 GO:0032502 GO:0034470 GO:0034641 GO:0034660 GO:0042245 GO:0043170 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0048316 GO:0048583 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0051301 GO:0061458 GO:0061640 GO:0065007 GO:0071704 GO:0090304 GO:0097159 GO:0140098 GO:1901360 GO:1901363 GO:1903047

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

tRNA_lig_CPD

Protein Analysis

1093

Amino Acids

121.83

Weight (kDa)

8.98

Isoelectric Point (pI)

37.55

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003227)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G07910 AT1G07910
fragaria_vesca	FvH4_3g33360 FvH4_3g33360 FvH4_3g33360 FvH4_3g33360 FvH4_3g33360 FvH4_3g33360 FvH4_3g33360 FvH4_3g33360 FvH4_4g02320
malus_domestica	MD03G1112400.v1.1 MD11G1129800.v1.1
prunus_persica	Prupe.6G094700_v2.0.a1
pyrus_communis	pycom11g10750 pycom11g10760
rosa_chinensis	RchiOBHm_Chr4g0389641 RchiOBHm_Chr5g0060751
rosa_laevigata	RLG00000009964 RLG00000035390
rosa_multiflora	Rmu_co8520825.1_g000001 Rmu_sc0006568.1_g000004 Rmu_sc0007419.1_g000006
rosa_roxburghii	Rroxscaffold_1G00019960 Rroxscaffold_5G00335630
rosa_rugosa	Rorug03G0324600 Rorug05G0333400
rosa_samantha	Rh4AG029200 Rh4BG022400 Rh4CG031200 Rh4DG022900 Rh5AG396400 Rh5BG408600 Rh5CG433200 Rh5DG423800
rosa_wichuraiana	Rw4G002180 Rw5G037370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1668
AarI	CACCTGC	1 cut(s)	3253
Acc16I	TGCGCA	1 cut(s)	2973
Acc36I	ACCTGC	3 cut(s)	1282, 2859, 3253
AccB1I	GGYRCC	3 cut(s)	21, 735, 3014
AccII	CGCG	1 cut(s)	443
AciI	CCGC	7 cut(s)	185, 188, 191, 1381, 1556, 1624, 2339
AclI	AACGTT	1 cut(s)	1332
AclWI	GGATC	5 cut(s)	532, 1615, 1882, 2537, 2550
AcoI	YGGCCR	3 cut(s)	1911, 2108, 2826
AcsI	RAATTY	6 cut(s)	1193, 1589, 2395, 2462, 2575, 2932
AcuI	CTGAAG	4 cut(s)	837, 1692, 2319, 2784
AcyI	GRCGYC	1 cut(s)	736
AfaI	GTAC	5 cut(s)	1760, 1805, 1965, 2280, 2792
AfiI	CCNNNNNNNGG	7 cut(s)	24, 143, 1004, 1813, 2408, 2443, 3258
AflII	CTTAAG	1 cut(s)	1091
AflIII	ACRYGT	2 cut(s)	1788, 2250
AgsI	TTSAA	7 cut(s)	88, 1459, 1588, 1832, 2117, 2363, 2619
AhlI	ACTAGT	1 cut(s)	2476
AjnI	CCWGG	5 cut(s)	877, 1408, 2032, 2041, 3094
AleI	CACNNNNGTG	1 cut(s)	1508
Alw21I	GWGCWC	2 cut(s)	850, 956
Alw26I	GTCTC	1 cut(s)	2230
AlwI	GGATC	5 cut(s)	532, 1615, 1882, 2537, 2550
AlwNI	CAGNNNCTG	1 cut(s)	2807
Ama87I	CYCGRG	4 cut(s)	403, 707, 1949, 2086
AoxI	GGCC	7 cut(s)	1418, 1911, 2108, 2268, 2826, 3137, 3183
ApeKI	GCWGC	9 cut(s)	182, 797, 1049, 1277, 1478, 1606, 1661, 2840, 3077
ApoI	RAATTY	6 cut(s)	1193, 1589, 2395, 2462, 2575, 2932
AseI	ATTAAT	2 cut(s)	1449, 2949
Asp700I	GAANNNNTTC	1 cut(s)	2916
AspLEI	GCGC	4 cut(s)	443, 738, 1049, 2974
AspS9I	GGNCC	5 cut(s)	134, 1025, 1655, 2268, 3034
AsuC2I	CCSGG	4 cut(s)	19, 2087, 2088, 2379
AsuII	TTCGAA	2 cut(s)	884, 3084
AvaI	CYCGRG	4 cut(s)	403, 707, 1949, 2086
AvaII	GGWCC	4 cut(s)	134, 1025, 1655, 3034
AxyI	CCTNAGG	1 cut(s)	1034
BaeGI	GKGCMC	1 cut(s)	1706
BalI	TGGCCA	1 cut(s)	1913
BamHI	GGATCC	1 cut(s)	2542
BanI	GGYRCC	3 cut(s)	21, 735, 3014
BanII	GRGCYC	2 cut(s)	850, 956
BbsI	GAAGAC	2 cut(s)	2253, 2718
Bbv12I	GWGCWC	2 cut(s)	850, 956
BbvCI	CCTCAGC	2 cut(s)	1808, 2010
BbvI	GCAGC	9 cut(s)	169, 784, 1036, 1264, 1465, 1593, 1648, 2827, 3064
BccI	CCATC	5 cut(s)	223, 352, 1975, 2561, 2604
BceAI	ACGGC	2 cut(s)	675, 2984
BcgI	CGANNNNNNTGC	2 cut(s)	698, 732
BciT130I	CCWGG	5 cut(s)	879, 1410, 2034, 2043, 3096
BclI	TGATCA	3 cut(s)	619, 1578, 2167
BcnI	CCSGG	4 cut(s)	19, 2087, 2088, 2379
BcoDI	GTCTC	1 cut(s)	2230
BcuI	ACTAGT	1 cut(s)	2476
BfaI	CTAG	4 cut(s)	614, 1323, 2265, 2477
BfoI	RGCGCY	1 cut(s)	739
BfrI	CTTAAG	1 cut(s)	1091
BfuAI	ACCTGC	3 cut(s)	1282, 2859, 3253
BglI	GCCNNNNNGGC	1 cut(s)	3182
BglII	AGATCT	1 cut(s)	2820
BlpI	GCTNAGC	1 cut(s)	1818
Bme1390I	CCNGG	9 cut(s)	19, 879, 1410, 2034, 2043, 2087, 2088, 2379, 3096
Bme18I	GGWCC	4 cut(s)	134, 1025, 1655, 3034
BmeT110I	CYCGRG	4 cut(s)	403, 707, 1949, 2086
BmgT120I	GGNCC	5 cut(s)	134, 1025, 1655, 2268, 3034
BmrFI	CCNGG	9 cut(s)	19, 879, 1410, 2034, 2043, 2087, 2088, 2379, 3096
BmrI	ACTGGG	1 cut(s)	1971
BmsI	GCATC	5 cut(s)	531, 796, 1144, 1555, 1728
BmuI	ACTGGG	1 cut(s)	1971
BpiI	GAAGAC	2 cut(s)	2253, 2718
BplI	GAGNNNNNCTC	2 cut(s)	60, 92
BpmI	CTGGAG	1 cut(s)	2769
Bpu10I	CCTNAGC	4 cut(s)	77, 276, 1808, 2010
Bpu1102I	GCTNAGC	1 cut(s)	1818
Bpu14I	TTCGAA	2 cut(s)	884, 3084
BpuEI	CTTGAG	4 cut(s)	380, 587, 1702, 2582
BpuMI	CCSGG	4 cut(s)	19, 2087, 2088, 2379
BsaHI	GRCGYC	1 cut(s)	736
BsaJI	CCNNGG	6 cut(s)	536, 2085, 2086, 3000, 3094, 3177
BsaWI	WCCGGW	1 cut(s)	2539
BsaXI	ACNNNNNCTCC	2 cut(s)	2648, 2678
Bsc4I	CCNNNNNNNGG	7 cut(s)	24, 143, 1004, 1813, 2408, 2443, 3258
Bse118I	RCCGGY	1 cut(s)	24
Bse1I	ACTGG	5 cut(s)	137, 1136, 1977, 2111, 2282
Bse21I	CCTNAGG	1 cut(s)	1034
Bse3DI	GCAATG	3 cut(s)	685, 1633, 2692
BseBI	CCWGG	5 cut(s)	879, 1410, 2034, 2043, 3096
BseDI	CCNNGG	6 cut(s)	536, 2085, 2086, 3000, 3094, 3177
BseGI	GGATG	7 cut(s)	354, 510, 546, 1207, 2107, 2374, 2572
BseLI	CCNNNNNNNGG	7 cut(s)	24, 143, 1004, 1813, 2408, 2443, 3258
BseMI	GCAATG	3 cut(s)	685, 1633, 2692
BseMII	CTCAG	8 cut(s)	91, 290, 1473, 1744, 1809, 1822, 1998, 2001
BseNI	ACTGG	5 cut(s)	137, 1136, 1977, 2111, 2282
BseRI	GAGGAG	4 cut(s)	22, 92, 981, 1096
BseSI	GKGCMC	1 cut(s)	1706
BseXI	GCAGC	9 cut(s)	169, 784, 1036, 1264, 1465, 1593, 1648, 2827, 3064
BseYI	CCCAGC	1 cut(s)	2891
BsgI	GTGCAG	2 cut(s)	2194, 3036
Bsh1236I	CGCG	1 cut(s)	443
BshFI	GGCC	7 cut(s)	1420, 1913, 2110, 2270, 2828, 3139, 3185
BshNI	GGYRCC	3 cut(s)	21, 735, 3014
BsiHKAI	GWGCWC	2 cut(s)	850, 956
BsiHKCI	CYCGRG	4 cut(s)	403, 707, 1949, 2086
BsiSI	CCGG	6 cut(s)	18, 25, 1658, 2087, 2378, 2540
BslFI	GGGAC	3 cut(s)	1038, 3020, 3274
BslI	CCNNNNNNNGG	7 cut(s)	24, 143, 1004, 1813, 2408, 2443, 3258
BsmAI	GTCTC	1 cut(s)	2230
BsmFI	GGGAC	3 cut(s)	1038, 3020, 3274
BsmI	GAATGC	4 cut(s)	719, 2218, 2410, 3080
BsnI	GGCC	7 cut(s)	1420, 1913, 2110, 2270, 2828, 3139, 3185
BsoBI	CYCGRG	4 cut(s)	403, 707, 1949, 2086
Bsp119I	TTCGAA	2 cut(s)	884, 3084
Bsp1286I	GDGCHC	3 cut(s)	850, 956, 1706
Bsp1407I	TGTACA	1 cut(s)	1758
Bsp1720I	GCTNAGC	1 cut(s)	1818
BspACI	CCGC	7 cut(s)	185, 188, 191, 1381, 1556, 1624, 2339
BspANI	GGCC	7 cut(s)	1420, 1913, 2110, 2270, 2828, 3139, 3185
BspCNI	CTCAG	8 cut(s)	90, 289, 1474, 1743, 1810, 1821, 1997, 2002
BspFNI	CGCG	1 cut(s)	443
BspMI	ACCTGC	3 cut(s)	1282, 2859, 3253
BspPI	GGATC	5 cut(s)	532, 1615, 1882, 2537, 2550
BspT104I	TTCGAA	2 cut(s)	884, 3084
BspT107I	GGYRCC	3 cut(s)	21, 735, 3014
BspTI	CTTAAG	1 cut(s)	1091
BsrDI	GCAATG	3 cut(s)	685, 1633, 2692
BsrFI	RCCGGY	1 cut(s)	24
BsrGI	TGTACA	1 cut(s)	1758
BsrI	ACTGG	5 cut(s)	137, 1136, 1977, 2111, 2282
BssAI	RCCGGY	1 cut(s)	24
BssECI	CCNNGG	6 cut(s)	536, 2085, 2086, 3000, 3094, 3177
BssNI	GRCGYC	1 cut(s)	736
BssT1I	CCWWGG	1 cut(s)	3177
Bst2UI	CCWGG	5 cut(s)	879, 1410, 2034, 2043, 3096
Bst4CI	ACNGT	6 cut(s)	578, 1416, 1507, 1836, 2664, 2694
Bst6I	CTCTTC	4 cut(s)	1924, 1932, 2807, 3065
BstACI	GRCGYC	1 cut(s)	736
BstAFI	CTTAAG	1 cut(s)	1091
BstAUI	TGTACA	1 cut(s)	1758
BstBI	TTCGAA	2 cut(s)	884, 3084
BstC8I	GCNNGC	7 cut(s)	26, 217, 546, 740, 2202, 2410, 3091
BstDSI	CCRYGG	1 cut(s)	3000
BstENI	CCTNNNNNAGG	2 cut(s)	1811, 2441
BstF5I	GGATG	7 cut(s)	354, 510, 546, 1207, 2107, 2374, 2572
BstFNI	CGCG	1 cut(s)	443
BstH2I	RGCGCY	1 cut(s)	739
BstHHI	GCGC	4 cut(s)	443, 738, 1049, 2974
BstMAI	GTCTC	1 cut(s)	2230
BstNI	CCWGG	5 cut(s)	879, 1410, 2034, 2043, 3096
BstNSI	RCATGY	2 cut(s)	1792, 2254
BstSCI	CCNGG	9 cut(s)	17, 877, 1408, 2032, 2041, 2085, 2086, 2377, 3094
BstSLI	GKGCMC	1 cut(s)	1706
BstUI	CGCG	1 cut(s)	443
BstV1I	GCAGC	9 cut(s)	169, 784, 1036, 1264, 1465, 1593, 1648, 2827, 3064
BstV2I	GAAGAC	2 cut(s)	2253, 2718
BstX2I	RGATCY	3 cut(s)	1874, 2542, 2820
BstXI	CCANNNNNNTGG	1 cut(s)	1416
BstYI	RGATCY	3 cut(s)	1874, 2542, 2820
Bsu36I	CCTNAGG	1 cut(s)	1034
BsuRI	GGCC	7 cut(s)	1420, 1913, 2110, 2270, 2828, 3139, 3185
BtgI	CCRYGG	1 cut(s)	3000
BtsCI	GGATG	7 cut(s)	354, 510, 546, 1207, 2107, 2374, 2572
BtsI	GCAGTG	2 cut(s)	786, 2510
BtsIMutI	CAGTG	8 cut(s)	786, 1188, 1503, 1806, 1984, 2177, 2510, 2592
BveI	ACCTGC	3 cut(s)	1282, 2859, 3253
Cac8I	GCNNGC	7 cut(s)	26, 217, 546, 740, 2202, 2410, 3091
CaiI	CAGNNNCTG	1 cut(s)	2807
CfoI	GCGC	4 cut(s)	443, 738, 1049, 2974
Cfr10I	RCCGGY	1 cut(s)	24
Cfr13I	GGNCC	5 cut(s)	134, 1025, 1655, 2268, 3034
Cfr9I	CCCGGG	1 cut(s)	2086
CseI	GACGC	3 cut(s)	620, 2339, 3271
CsiI	ACCWGGT	2 cut(s)	877, 2041
Csp6I	GTAC	5 cut(s)	1759, 1804, 1964, 2279, 2791
CviQI	GTAC	5 cut(s)	1759, 1804, 1964, 2279, 2791
DinI	GGCGCC	1 cut(s)	737
DraI	TTTAAA	3 cut(s)	1200, 1285, 1648
EaeI	YGGCCR	3 cut(s)	1911, 2108, 2826
Eam1104I	CTCTTC	4 cut(s)	1924, 1932, 2807, 3065
EarI	CTCTTC	4 cut(s)	1924, 1932, 2807, 3065
EciI	GGCGGA	1 cut(s)	1571
Ecl136II	GAGCTC	2 cut(s)	848, 954
Eco130I	CCWWGG	1 cut(s)	3177
Eco24I	GRGCYC	2 cut(s)	850, 956
Eco32I	GATATC	1 cut(s)	2866
Eco47I	GGWCC	4 cut(s)	134, 1025, 1655, 3034
Eco53kI	GAGCTC	2 cut(s)	848, 954
Eco57I	CTGAAG	4 cut(s)	837, 1692, 2319, 2784
Eco81I	CCTNAGG	1 cut(s)	1034
Eco88I	CYCGRG	4 cut(s)	403, 707, 1949, 2086
EcoICRI	GAGCTC	2 cut(s)	848, 954
EcoNI	CCTNNNNNAGG	2 cut(s)	1811, 2441
EcoO109I	RGGNCCY	2 cut(s)	2268, 3034
EcoRII	CCWGG	5 cut(s)	877, 1408, 2032, 2041, 3094
EcoRV	GATATC	1 cut(s)	2866
EcoT14I	CCWWGG	1 cut(s)	3177
EcoT38I	GRGCYC	2 cut(s)	850, 956
EgeI	GGCGCC	1 cut(s)	737
EheI	GGCGCC	1 cut(s)	737
ErhI	CCWWGG	1 cut(s)	3177
FalI	AAGNNNNNCTT	5 cut(s)	28, 1074, 1106, 2862, 2894
FaqI	GGGAC	3 cut(s)	1038, 3020, 3274
FauNDI	CATATG	2 cut(s)	963, 2188
FbaI	TGATCA	3 cut(s)	619, 1578, 2167
FokI	GGATG	7 cut(s)	361, 517, 553, 1194, 2114, 2361, 2579
FriOI	GRGCYC	2 cut(s)	850, 956
FspBI	CTAG	4 cut(s)	614, 1323, 2265, 2477
FspI	TGCGCA	1 cut(s)	2973
GlaI	GCGC	4 cut(s)	442, 737, 1048, 2973
GsaI	CCCAGC	1 cut(s)	2895
GsuI	CTGGAG	1 cut(s)	2769
HaeII	RGCGCY	1 cut(s)	739
HaeIII	GGCC	7 cut(s)	1420, 1913, 2110, 2270, 2828, 3139, 3185
HapII	CCGG	6 cut(s)	18, 25, 1658, 2087, 2378, 2540
HgaI	GACGC	3 cut(s)	620, 2339, 3271
HhaI	GCGC	4 cut(s)	443, 738, 1049, 2974
Hin1I	GRCGYC	1 cut(s)	736
Hin6I	GCGC	4 cut(s)	441, 736, 1047, 2972
HinP1I	GCGC	4 cut(s)	441, 736, 1047, 2972
HindIII	AAGCTT	1 cut(s)	2913
HpaII	CCGG	6 cut(s)	18, 25, 1658, 2087, 2378, 2540
Hpy166II	GTNNAC	5 cut(s)	1271, 1513, 1759, 1804, 2495
Hpy8I	GTNNAC	5 cut(s)	1271, 1513, 1759, 1804, 2495
Hpy99I	CGWCG	1 cut(s)	271
HpyCH4III	ACNGT	6 cut(s)	578, 1416, 1507, 1836, 2664, 2694
HpyCH4IV	ACGT	5 cut(s)	269, 1332, 1846, 2223, 2365
HpySE526I	ACGT	5 cut(s)	269, 1332, 1846, 2223, 2365
Hsp92I	GRCGYC	1 cut(s)	736
HspAI	GCGC	4 cut(s)	441, 736, 1047, 2972
KasI	GGCGCC	1 cut(s)	735
KroI	GCCGGC	1 cut(s)	24
KroNI	GCCGGC	1 cut(s)	26
Ksp22I	TGATCA	3 cut(s)	619, 1578, 2167
LmnI	GCTCC	6 cut(s)	9, 81, 1007, 1109, 1145, 2627
Lsp1109I	GCAGC	9 cut(s)	169, 784, 1036, 1264, 1465, 1593, 1648, 2827, 3064
LweI	GCATC	5 cut(s)	531, 796, 1144, 1555, 1728
MabI	ACCWGGT	2 cut(s)	877, 2041
MaeI	CTAG	4 cut(s)	614, 1323, 2265, 2477
MaeII	ACGT	5 cut(s)	269, 1332, 1846, 2223, 2365
MflI	RGATCY	3 cut(s)	1874, 2542, 2820
MhlI	GDGCHC	3 cut(s)	850, 956, 1706
MlsI	TGGCCA	1 cut(s)	1913
MluNI	TGGCCA	1 cut(s)	1913
Mly113I	GGCGCC	1 cut(s)	736
MlyI	GAGTC	8 cut(s)	257, 1361, 1967, 2446, 2477, 2732, 2776, 3126
MmeI	TCCRAC	1 cut(s)	707
Mox20I	TGGCCA	1 cut(s)	1913
MroNI	GCCGGC	1 cut(s)	24
MroXI	GAANNNNTTC	1 cut(s)	2916
MscI	TGGCCA	1 cut(s)	1913
MslI	CAYNNNNRTG	4 cut(s)	899, 1308, 1508, 2439
Msp20I	TGGCCA	1 cut(s)	1913
MspA1I	CMGCKG	1 cut(s)	1381
MspCI	CTTAAG	1 cut(s)	1091
MspI	CCGG	6 cut(s)	18, 25, 1658, 2087, 2378, 2540
MspR9I	CCNGG	9 cut(s)	19, 879, 1410, 2034, 2043, 2087, 2088, 2379, 3096
Mva1269I	GAATGC	4 cut(s)	719, 2218, 2410, 3080
MvaI	CCWGG	5 cut(s)	879, 1410, 2034, 2043, 3096
MvnI	CGCG	1 cut(s)	443
NaeI	GCCGGC	1 cut(s)	26
NarI	GGCGCC	1 cut(s)	736
NciI	CCSGG	4 cut(s)	19, 2087, 2088, 2379
NdeI	CATATG	2 cut(s)	963, 2188
NgoMIV	GCCGGC	1 cut(s)	24
NmeAIII	GCCGAG	1 cut(s)	2804
NmuCI	GTSAC	7 cut(s)	408, 601, 655, 664, 781, 1325, 3118
NsbI	TGCGCA	1 cut(s)	2973
NspI	RCATGY	2 cut(s)	1792, 2254
NspV	TTCGAA	2 cut(s)	884, 3084
OliI	CACNNNNGTG	1 cut(s)	1508
PaeR7I	CTCGAG	1 cut(s)	1949
PaqCI	CACCTGC	1 cut(s)	3253
PciI	ACATGT	2 cut(s)	1788, 2250
PcsI	WCGNNNNNNNCGW	1 cut(s)	533
PctI	GAATGC	4 cut(s)	719, 2218, 2410, 3080
PdiI	GCCGGC	1 cut(s)	26
PdmI	GAANNNNTTC	1 cut(s)	2916
PfeI	GAWTC	8 cut(s)	156, 1313, 1858, 2294, 2309, 2530, 2615, 2804
PflFI	GACNNNGTC	1 cut(s)	630
PfoI	TCCNGGA	2 cut(s)	2032, 2377
PleI	GAGTC	8 cut(s)	257, 1361, 1966, 2446, 2476, 2731, 2776, 3125
PluTI	GGCGCC	1 cut(s)	739
PpsI	GAGTC	8 cut(s)	257, 1361, 1966, 2446, 2476, 2731, 2776, 3125
PpuMI	RGGWCCY	1 cut(s)	3034
PscI	ACATGT	2 cut(s)	1788, 2250
PshBI	ATTAAT	2 cut(s)	1449, 2949
PsiI	TTATAA	1 cut(s)	1668
Psp124BI	GAGCTC	2 cut(s)	850, 956
Psp1406I	AACGTT	1 cut(s)	1332
Psp5II	RGGWCCY	1 cut(s)	3034
Psp6I	CCWGG	5 cut(s)	877, 1408, 2032, 2041, 3094
PspFI	CCCAGC	1 cut(s)	2891
PspGI	CCWGG	5 cut(s)	877, 1408, 2032, 2041, 3094
PspPI	GGNCC	5 cut(s)	134, 1025, 1655, 2268, 3034
PspPPI	RGGWCCY	1 cut(s)	3034
PsrI	GAACNNNNNNTAC	2 cut(s)	2271, 2303
PstNI	CAGNNNCTG	1 cut(s)	2807
PsuI	RGATCY	3 cut(s)	1874, 2542, 2820
PsyI	GACNNNGTC	1 cut(s)	630
RsaI	GTAC	5 cut(s)	1760, 1805, 1965, 2280, 2792
RsaNI	GTAC	5 cut(s)	1759, 1804, 1964, 2279, 2791
RseI	CAYNNNNRTG	4 cut(s)	899, 1308, 1508, 2439
SacI	GAGCTC	2 cut(s)	850, 956
Sau96I	GGNCC	5 cut(s)	134, 1025, 1655, 2268, 3034
SchI	GAGTC	8 cut(s)	257, 1361, 1967, 2446, 2477, 2732, 2776, 3126
ScrFI	CCNGG	9 cut(s)	19, 879, 1410, 2034, 2043, 2087, 2088, 2379, 3096
SduI	GDGCHC	3 cut(s)	850, 956, 1706
SexAI	ACCWGGT	2 cut(s)	877, 2041
SfaNI	GCATC	5 cut(s)	531, 796, 1144, 1555, 1728
SfoI	GGCGCC	1 cut(s)	737
Sfr274I	CTCGAG	1 cut(s)	1949
SfuI	TTCGAA	2 cut(s)	884, 3084
SinI	GGWCC	4 cut(s)	134, 1025, 1655, 3034
SlaI	CTCGAG	1 cut(s)	1949
SmaI	CCCGGG	1 cut(s)	2088
SmiMI	CAYNNNNRTG	4 cut(s)	899, 1308, 1508, 2439
SmlI	CTYRAG	6 cut(s)	395, 566, 1091, 1681, 1949, 2561
SmoI	CTYRAG	6 cut(s)	395, 566, 1091, 1681, 1949, 2561
SpeI	ACTAGT	1 cut(s)	2476
SsiI	CCGC	7 cut(s)	185, 188, 191, 1381, 1556, 1624, 2339
SspDI	GGCGCC	1 cut(s)	735
SspI	AATATT	1 cut(s)	2150
SspMI	CTAG	4 cut(s)	614, 1323, 2265, 2477
SstI	GAGCTC	2 cut(s)	850, 956
StyD4I	CCNGG	9 cut(s)	17, 877, 1408, 2032, 2041, 2085, 2086, 2377, 3094
StyI	CCWWGG	1 cut(s)	3177
TaaI	ACNGT	6 cut(s)	578, 1416, 1507, 1836, 2664, 2694
TaiI	ACGT	5 cut(s)	272, 1335, 1849, 2226, 2368
TatI	WGTACW	2 cut(s)	1758, 2790
TauI	GCSGC	2 cut(s)	188, 191
TfiI	GAWTC	8 cut(s)	156, 1313, 1858, 2294, 2309, 2530, 2615, 2804
TscAI	CASTG	8 cut(s)	786, 1188, 1510, 1806, 1984, 2177, 2517, 2599
TseFI	GTSAC	7 cut(s)	408, 601, 655, 664, 781, 1325, 3118
TseI	GCWGC	9 cut(s)	182, 797, 1049, 1277, 1478, 1606, 1661, 2840, 3077
Tsp45I	GTSAC	7 cut(s)	408, 601, 655, 664, 781, 1325, 3118
TspGWI	ACGGA	5 cut(s)	683, 1349, 2307, 2321, 3080
TspMI	CCCGGG	1 cut(s)	2086
TspRI	CASTG	8 cut(s)	786, 1188, 1510, 1806, 1984, 2177, 2517, 2599
Tth111I	GACNNNGTC	1 cut(s)	630
Vha464I	CTTAAG	1 cut(s)	1091
VpaK11BI	GGWCC	4 cut(s)	134, 1025, 1655, 3034
VspI	ATTAAT	2 cut(s)	1449, 2949
XagI	CCTNNNNNAGG	2 cut(s)	1811, 2441
XapI	RAATTY	6 cut(s)	1193, 1589, 2395, 2462, 2575, 2932
XceI	RCATGY	2 cut(s)	1792, 2254
XhoI	CTCGAG	1 cut(s)	1949
XmaI	CCCGGG	1 cut(s)	2086
XmnI	GAANNNNTTC	1 cut(s)	2916
XspI	CTAG	4 cut(s)	614, 1323, 2265, 2477

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.