Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0003227

Physical Location & Seq

Genomic Coordinates Forward (+)

24352058 .. 24367527

Gene Structure 15470 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00019960.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3609 bp

ATGCCGCCTCCGCACAGGATTCTATCCGCTCTCTCTCTCACTCTTCCTCCATCTTCTTCTTCAGCCTTCGTTTCCGGAACCTTCTTCTTCCTTAGGTCATCTCCTTCCTACATAACTCCACCTCGCTCTTTCTCCTCCTCCATTTCTCTCTCGCATTCAACCATGCCGTACAGCCAGCGAAAGGGTGGGCAAAAGTGGAGAGAGAAAACAAAGACCGTCAGCTCCGTCGATAACAGACTTGGTGAATGGAGTGCTAGTGGAAGCAGTGGGCAAACTCAAGCATCAGTTCAGCCCATACAGTTTGGGAAGGTACAAGTAAATCCGGTTCCAGTACAAGGTCAAAAAGGAATATGGAAGCCTAAATCTTATGGAACTGTCAGTGGGTCTACGGCAGTAGAAGCTGAAGTACCTGTTGATAAAAGTTCGGTTGGATTAGAGCAAAATGGAGTTGGACTAGCAACTCCTCAGAAAAGTAGTTCTGGTGCAAGTAAGTTGTTCAAGGGTAATCTATTGGAAAATTTTACTGTGGACAACTCAACATATGCTCAGGTGCAAATACGAGCTACTTTCTATCCTAAATTTGAAAATGAGAAGTCAGATCAGGAGATTAGGACAAGGATGATTGAGATGGTATCTCAAGGCTCGGCTACCTTGGAGGTTTCACTTAAACACTCGGGGTCACTTTTTATGTACGCTGGTAATGAGGGTGGTGCTTATGCCAAAAACAGCTTTGGTAATATATATACAGCTGTTGGTGTATTTGTTCTTGGACGGATGTTACATGAAGCATGGGGACCTGAAGCAGCAAAAAAGCAAGCAGAGTTCAATGATTTCCTAGAGAGGAACCATATGTGCATATCAATGGAGCTCGTAACTGCAGTCCTAGGAGACCATGGACAGCGTCCAAATGAAGATTTTGTTGTGGTGACAGCAGTCACAGATCTGGGCAATGGGAAGCCAAAGTTCTACTCAACCCCTGAGATTATTGCTTTCTGTCGGAAATGGCGCCTTCCAACAAATCATGTATGGCTGTTCTCAACAAGATTTACACTAAATGGTTGGATAGTTGGAAAAGAGATTTTGGTCAAAAGCAGTGGTTTGGGAAAGTTTGCAAATCTAATGGTTCATCTTACATTGGAAGTTAGGAAAGCAGTGACATCATTTTTTGCTGCCTTTGATGCCTTGTGTGAAGAAGGAACTGCAACAACTGTGTGCAGAGCTCTTGATGAAGTTGCAGATATATCTATACCAGGTTCAAAAGATCATATCAAGGAGCAGGGTGAAATCTTAGAGGGTATTGTTGCTCGTATTGTAAGCCATGAGAGCTCAAAGCATATGGTGGAAGTCTTAAAAGATTTCCCTCCTCCCCCAATGGAAGGAGCTGGTCATGATTTGGGACCAAGCCTAAGGGAGATTTGTGCTGCAAATAGGTCGGATGAAACACAGCAAATAAAAGCTCTTCTCAAGGGTGTTGGCTCCTCTTTTTGCCCTGACCATTCAGACTGGCTTGGGGGAGCTGGTGATGCCCAATCTAGAAATGCAGATAAAGCCGTGGTTTCAAAATTTTTACAATCTCACCCTGCTGATTTTTCTACCACCAAATTGCAGGAAGTGATTCGTTTGATGAGAGAAAAGCGTTTTCCTGCTGCCTTTAAATGCTACCATAACTACCACAAACAGGATTCCATGTCCAATGACAACCTTTTCTACAAAATGGTTATTCATGTCCATAGTGACTCTGCATTTCGGCGTTATCAGAAAGAGATGAGGTCGAAGCCAGGACTTTGGCCTTTATATCGAGGTTTTTTCGTTGACATTAATTTGTTCAAGGCAAGCAATGAGAGAGCTGCTGAGATTGCAAAAAACAAAAGCACTGTTGTGGACGATGATGGTGGCACTGGTATGTCCGGAAAACATGGATTGGCTGATGAAGACGCAAACTTAATGATCAAATTGAAATTTCTTACCTATAAGTTGCGTACCTTTTTGATCCGCAATGGTTTGTCAATTCTTTTTAAAGAAGGTCCGGCAGCCTATAAAGCCTATTACTTGAGGCAAATGAAAATATGGGGCACTTCAGCAGGAAAGCAGAGGGAACTCAGCCATATGCTCGATGAATGGGCTGTGTACATACGACGGAAATGTGGAAACAAACAGCTGTCATCATCAGTGTACCTCAGTGAGGCTGAGCCTTTCCTTGAACAATATGCTAAACGGAGCCCACAGAATCAGGCTCTTATAGGATCTGCTGGAAACTTAGTAAGGGCTGAAGACTTCTTGGCCATAGTTGAGGGAGGAAGAGATGAAGAGGGTGATCTTGAGAAGGAGTTTGTACCATCAAGCCCCAGTGCCTCAACCGGGGACATCATTCCAAAGGCTGAGGGTCTGATTGTATTCTTTCCTGGACTACCTGGTTCTGCTAAGTCAGCACTGTGCAAGGAACTACTCAAAGCCCCTGGAGGATTTGGGGATGATAGGCCAGTTCACACTCTTATGGGTGACCTTGTTAAAGGAAGATATTGGCAGAAGGTCGCTGATGAGCGGAAGAAAAAACCGTATTCTATAATGCTTGCAGACAAGAATGCACCAAATGAAGAAGTGTGGAGACAGATTGAAGACATGTGCCACAGAACCGGGGCCAATGCAGTTCCAGTTGTTCCTGATTCTGAAGGCACTGATTCAAATCCGTTTTCTCTTGACTCATTAGCGGTTTTCATGTATCGTGTGCTTCAACGTTCTAATCATCCTGGAAACCTCGACAAGAATTCTCCGAATGCTGGCTATGTGCTCTTAATGTTCTATCACCTTTATGAGGGCAAAAGTCGTAGCGAGTTTGATGGTGAATTAGTTGAGCGTTTTGGTTCGCTTGTCAAGATACCACTGCTGAAATCTGATAGGAATCCATTACCTGATCCTGTGAAATCAACTCTTGAGGAGGGAATAAATTTATACAAGCTTCACACTAAGAAACACGGAAGATTGGAGTCTACCAAGGGAACCTATGCAAATGAGTGGGCTAAATGGGAGAAACAGTTGCGAGATGTTCCTTTTGAGTCTGCTGTTAAGGAAGTATCAGAAGAGCTAAGTAAGATTGCAAAAGGTGAGTATGAGACTCCAGAGTACAGAACTCCAGATTCTGGGAAGAGGAAGATTGGGGCCATTGTTTTTGCTGCCATTAGCCTGCCTATTACCGAAATCAAAGGTTTGCTTGATAATTTGGCTGGGAAAGATAGTAAAGCCGCAGCTTTCCTCAAAGACAAGAATTTGGAGAACCAGATTAATAAGGCCCATGTTACTCTTGCACACAAGAGAAGTCATGGTGTTACTGCGGTGGCTAATTACGGCATCTTCCTACACAAACAGGTCCCTGTGGATATAACTGCACTGCTCTTCACAGATAAAATGGCTGCGTTTGAAGCATGCCCTGGCTCTGTTGAAGGTGAAAGAGTCGTCTCCAAAAACGAGTGGCCACATGTTACCATATGGACTGCAGAGGGTGTTGCAGCTAAGGAGGCCAACTTGTTACATAATTTGCATTTAGAAGGGAAGGCTACTCGTATTGCAATTGACCCACCTGCCACCATTCAGGGGCTGCTGGAGTTTTACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000278 GO:0000281 GO:0000394 GO:0000910 GO:0003006 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003824 GO:0003972 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006388 GO:0006396 GO:0006399 GO:0006725 GO:0006807 GO:0007049 GO:0007275 GO:0008033 GO:0008150 GO:0008152 GO:0008356 GO:0008380 GO:0008452 GO:0009790 GO:0009791 GO:0009793 GO:0009966 GO:0009987 GO:0010069 GO:0010070 GO:0010154 GO:0010467 GO:0010646 GO:0010928 GO:0016070 GO:0016874 GO:0016886 GO:0022402 GO:0022414 GO:0023051 GO:0032501 GO:0032502 GO:0034470 GO:0034641 GO:0034660 GO:0042245 GO:0043170 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0048316 GO:0048583 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0051301 GO:0061458 GO:0061640 GO:0065007 GO:0071704 GO:0090304 GO:0097159 GO:0140098 GO:1901360 GO:1901363 GO:1903047

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

tRNA_lig_CPD

Protein Analysis

1202

Amino Acids

132.85

Weight (kDa)

8.67

Isoelectric Point (pI)

36.73

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003227)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G07910 AT1G07910
fragaria_vesca	FvH4_3g33360 FvH4_3g33360 FvH4_3g33360 FvH4_3g33360 FvH4_3g33360 FvH4_3g33360 FvH4_3g33360 FvH4_3g33360 FvH4_4g02320
malus_domestica	MD03G1112400.v1.1 MD11G1129800.v1.1
prunus_persica	Prupe.6G094700_v2.0.a1
pyrus_communis	pycom11g10750 pycom11g10760
rosa_chinensis	RchiOBHm_Chr4g0389641 RchiOBHm_Chr5g0060751
rosa_laevigata	RLG00000009964 RLG00000035390
rosa_multiflora	Rmu_co8520825.1_g000001 Rmu_sc0006568.1_g000004 Rmu_sc0007419.1_g000006
rosa_roxburghii	Rroxscaffold_1G00019960 Rroxscaffold_5G00335630
rosa_rugosa	Rorug03G0324600 Rorug05G0333400
rosa_samantha	Rh4AG029200 Rh4BG022400 Rh4CG031200 Rh4DG022900 Rh5AG396400 Rh5BG408600 Rh5CG433200 Rh5DG423800
rosa_wichuraiana	Rw4G002180 Rw5G037370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	3583
Acc36I	ACCTGC	1 cut(s)	3583
AccB1I	GGYRCC	1 cut(s)	1005
AccB7I	CCANNNNNTGG	1 cut(s)	3137
AccBSI	CCGCTC	2 cut(s)	29, 2542
AccI	GTMKAC	2 cut(s)	386, 2987
AccIII	TCCGGA	2 cut(s)	74, 1907
AciI	CCGC	8 cut(s)	5, 11, 27, 1993, 2542, 2708, 3240, 3329
AclI	AACGTT	1 cut(s)	2734
AclWI	GGATC	3 cut(s)	1984, 2251, 2906
AcoI	YGGCCR	2 cut(s)	2280, 3467
AcsI	RAATTY	7 cut(s)	517, 578, 1562, 1958, 2764, 2944, 3262
AcuI	CTGAAG	6 cut(s)	45, 423, 819, 2061, 2289, 2688
AcyI	GRCGYC	1 cut(s)	1006
AflIII	ACRYGT	2 cut(s)	2619, 3472
AjnI	CCWGG	7 cut(s)	1249, 1777, 2401, 2410, 2455, 2746, 3424
AleI	CACNNNNGTG	1 cut(s)	1877
Alw21I	GWGCWC	4 cut(s)	870, 1222, 1328, 2790
Alw26I	GTCTC	4 cut(s)	882, 2599, 3104, 3457
AlwI	GGATC	3 cut(s)	1984, 2251, 2906
AlwNI	CAGNNNCTG	2 cut(s)	3137, 3592
Ama87I	CYCGRG	1 cut(s)	673
Aor13HI	TCCGGA	2 cut(s)	74, 1907
AoxI	GGCC	8 cut(s)	1787, 2280, 2477, 2637, 3156, 3285, 3467, 3513
ApoI	RAATTY	7 cut(s)	517, 578, 1562, 1958, 2764, 2944, 3262
AseI	ATTAAT	2 cut(s)	1818, 3279
Asp700I	GAANNNNTTC	1 cut(s)	1614
AspA2I	CCTAGG	1 cut(s)	883
AspLEI	GCGC	1 cut(s)	1008
AspS9I	GGNCC	7 cut(s)	794, 1397, 2024, 2637, 3156, 3286, 3364
AsuC2I	CCSGG	2 cut(s)	2359, 2635
AvaI	CYCGRG	1 cut(s)	673
AvaII	GGWCC	4 cut(s)	794, 1397, 2024, 3364
AvrII	CCTAGG	1 cut(s)	883
AxyI	CCTNAGG	2 cut(s)	92, 1406
BaeGI	GKGCMC	1 cut(s)	2075
BalI	TGGCCA	2 cut(s)	2282, 3469
BanI	GGYRCC	1 cut(s)	1005
BanII	GRGCYC	4 cut(s)	870, 1222, 1328, 2222
BarI	GAAGNNNNNNTAC	2 cut(s)	390, 422
BbsI	GAAGAC	3 cut(s)	1938, 2277, 2622
Bbv12I	GWGCWC	4 cut(s)	870, 1222, 1328, 2790
BbvCI	CCTCAGC	1 cut(s)	2379
BccI	CCATC	5 cut(s)	58, 622, 1883, 2344, 2831
BceAI	ACGGC	4 cut(s)	151, 405, 1535, 3358
BcgI	CGANNNNNNTGC	2 cut(s)	1413, 1447
BciT130I	CCWGG	7 cut(s)	1251, 1779, 2403, 2412, 2457, 2748, 3426
BclI	TGATCA	1 cut(s)	1947
BcnI	CCSGG	2 cut(s)	2359, 2635
BcoDI	GTCTC	4 cut(s)	882, 2599, 3104, 3457
BfaI	CTAG	5 cut(s)	255, 455, 836, 884, 1533
BfmI	CTRYAG	2 cut(s)	876, 3489
BfoI	RGCGCY	1 cut(s)	1009
BfuAI	ACCTGC	1 cut(s)	3583
BglII	AGATCT	1 cut(s)	940
BlnI	CCTAGG	1 cut(s)	883
BlpI	GCTNAGC	1 cut(s)	2187
Bme1390I	CCNGG	9 cut(s)	1251, 1779, 2359, 2403, 2412, 2457, 2635, 2748, 3426
Bme18I	GGWCC	4 cut(s)	794, 1397, 2024, 3364
BmeT110I	CYCGRG	1 cut(s)	673
BmgT120I	GGNCC	7 cut(s)	794, 1397, 2024, 2637, 3156, 3286, 3364
BmrFI	CCNGG	9 cut(s)	1251, 1779, 2359, 2403, 2412, 2457, 2635, 2748, 3426
BmrI	ACTGGG	1 cut(s)	2340
BmsI	GCATC	4 cut(s)	290, 1168, 1513, 3354
BmuI	ACTGGG	1 cut(s)	2340
BoxI	GACNNNNGTC	1 cut(s)	932
BpiI	GAAGAC	3 cut(s)	1938, 2277, 2622
BpmI	CTGGAG	3 cut(s)	2478, 3099, 3114
Bpu10I	CCTNAGC	3 cut(s)	546, 2379, 3507
Bpu1102I	GCTNAGC	1 cut(s)	2187
BpuEI	CTTGAG	6 cut(s)	261, 621, 1448, 2071, 2339, 2951
BpuMI	CCSGG	2 cut(s)	2359, 2635
BsaBI	GATNNNNATC	2 cut(s)	2682, 2898
BsaHI	GRCGYC	1 cut(s)	1006
BsaI	GGTCTC	1 cut(s)	882
BsaJI	CCNNGG	9 cut(s)	651, 883, 892, 1551, 2358, 2455, 2634, 2991, 3424
BsaWI	WCCGGW	3 cut(s)	74, 322, 1907
BsaXI	ACNNNNNCTCC	6 cut(s)	31, 61, 241, 271, 3017, 3047
Bse1I	ACTGG	6 cut(s)	329, 1508, 1903, 2346, 2480, 2651
Bse21I	CCTNAGG	2 cut(s)	92, 1406
Bse3DI	GCAATG	3 cut(s)	955, 1843, 2002
Bse8I	GATNNNNATC	2 cut(s)	2682, 2898
BseAI	TCCGGA	2 cut(s)	74, 1907
BseBI	CCWGG	7 cut(s)	1251, 1779, 2403, 2412, 2457, 2748, 3426
BseDI	CCNNGG	9 cut(s)	651, 883, 892, 1551, 2358, 2455, 2634, 2991, 3424
BseGI	GGATG	5 cut(s)	624, 780, 1441, 2476, 2743
BseJI	GATNNNNATC	2 cut(s)	2682, 2898
BseMI	GCAATG	3 cut(s)	955, 1843, 2002
BseMII	CTCAG	8 cut(s)	479, 560, 969, 1842, 2113, 2178, 2191, 2370
BseNI	ACTGG	6 cut(s)	329, 1508, 1903, 2346, 2480, 2651
BseRI	GAGGAG	6 cut(s)	124, 127, 453, 1353, 1468, 2948
BseSI	GKGCMC	1 cut(s)	2075
BseYI	CCCAGC	1 cut(s)	3221
BsgI	GTGCAG	2 cut(s)	1234, 3366
BshFI	GGCC	8 cut(s)	1789, 2282, 2479, 2639, 3158, 3287, 3469, 3515
BshNI	GGYRCC	1 cut(s)	1005
BsiHKAI	GWGCWC	4 cut(s)	870, 1222, 1328, 2790
BsiHKCI	CYCGRG	1 cut(s)	673
BsiSI	CCGG	6 cut(s)	75, 323, 1908, 2027, 2358, 2634
BslFI	GGGAC	4 cut(s)	807, 1410, 2375, 3350
BsmAI	GTCTC	4 cut(s)	882, 2599, 3104, 3457
BsmBI	CGTCTC	1 cut(s)	3457
BsmFI	GGGAC	4 cut(s)	807, 1410, 2375, 3350
BsmI	GAATGC	3 cut(s)	154, 2587, 2779
BsnI	GGCC	8 cut(s)	1789, 2282, 2479, 2639, 3158, 3287, 3469, 3515
Bso31I	GGTCTC	1 cut(s)	882
BsoBI	CYCGRG	1 cut(s)	673
Bsp1286I	GDGCHC	6 cut(s)	870, 1222, 1328, 2075, 2222, 2790
Bsp13I	TCCGGA	2 cut(s)	74, 1907
Bsp1407I	TGTACA	1 cut(s)	2127
Bsp143I	GATC	8 cut(s)	598, 940, 1261, 1947, 1989, 2243, 2314, 2911
Bsp1720I	GCTNAGC	1 cut(s)	2187
Bsp19I	CCATGG	1 cut(s)	892
BspACI	CCGC	8 cut(s)	5, 11, 27, 1993, 2542, 2708, 3240, 3329
BspANI	GGCC	8 cut(s)	1789, 2282, 2479, 2639, 3158, 3287, 3469, 3515
BspCNI	CTCAG	8 cut(s)	478, 559, 970, 1843, 2112, 2179, 2190, 2371
BspEI	TCCGGA	2 cut(s)	74, 1907
BspHI	TCATGA	1 cut(s)	1387
BspMAI	CTGCAG	2 cut(s)	880, 3493
BspMI	ACCTGC	1 cut(s)	3583
BspPI	GGATC	3 cut(s)	1984, 2251, 2906
BspQI	GCTCTTC	3 cut(s)	1464, 3072, 3395
BspT107I	GGYRCC	1 cut(s)	1005
BspTNI	GGTCTC	1 cut(s)	882
BsrBI	CCGCTC	2 cut(s)	29, 2542
BsrDI	GCAATG	3 cut(s)	955, 1843, 2002
BsrGI	TGTACA	1 cut(s)	2127
BsrI	ACTGG	6 cut(s)	329, 1508, 1903, 2346, 2480, 2651
BssECI	CCNNGG	9 cut(s)	651, 883, 892, 1551, 2358, 2455, 2634, 2991, 3424
BssMI	GATC	8 cut(s)	598, 940, 1261, 1947, 1989, 2243, 2314, 2911
BssNI	GRCGYC	1 cut(s)	1006
BssT1I	CCWWGG	4 cut(s)	651, 883, 892, 2991
Bst2UI	CCWGG	7 cut(s)	1251, 1779, 2403, 2412, 2457, 2748, 3426
Bst4CI	ACNGT	9 cut(s)	217, 300, 376, 526, 1210, 1876, 2433, 2556, 3033
Bst6I	CTCTTC	7 cut(s)	48, 1464, 2293, 2301, 3072, 3137, 3395
BstACI	GRCGYC	1 cut(s)	1006
BstAUI	TGTACA	1 cut(s)	2127
BstC8I	GCNNGC	7 cut(s)	176, 816, 1834, 2571, 2779, 3182, 3421
BstDSI	CCRYGG	2 cut(s)	892, 1551
BstEII	GGTNACC	1 cut(s)	2498
BstENI	CCTNNNNNAGG	2 cut(s)	2180, 2810
BstF5I	GGATG	5 cut(s)	624, 780, 1441, 2476, 2743
BstH2I	RGCGCY	1 cut(s)	1009
BstHHI	GCGC	1 cut(s)	1008
BstKTI	GATC	8 cut(s)	601, 943, 1264, 1950, 1992, 2246, 2317, 2914
BstMAI	GTCTC	4 cut(s)	882, 2599, 3104, 3457
BstMBI	GATC	8 cut(s)	598, 940, 1261, 1947, 1989, 2243, 2314, 2911
BstNI	CCWGG	7 cut(s)	1251, 1779, 2403, 2412, 2457, 2748, 3426
BstNSI	RCATGY	3 cut(s)	2623, 3423, 3476
BstPAI	GACNNNNGTC	1 cut(s)	932
BstPI	GGTNACC	1 cut(s)	2498
BstSCI	CCNGG	9 cut(s)	1249, 1777, 2357, 2401, 2410, 2455, 2633, 2746, 3424
BstSFI	CTRYAG	2 cut(s)	876, 3489
BstSLI	GKGCMC	1 cut(s)	2075
BstV2I	GAAGAC	3 cut(s)	1938, 2277, 2622
BstX2I	RGATCY	2 cut(s)	940, 2243
BstXI	CCANNNNNNTGG	1 cut(s)	1785
BstYI	RGATCY	2 cut(s)	940, 2243
Bsu36I	CCTNAGG	2 cut(s)	92, 1406
BsuRI	GGCC	8 cut(s)	1789, 2282, 2479, 2639, 3158, 3287, 3469, 3515
BtgI	CCRYGG	2 cut(s)	892, 1551
BtsCI	GGATG	5 cut(s)	624, 780, 1441, 2476, 2743
BtsI	GCAGTG	5 cut(s)	271, 1099, 1158, 2879, 3383
BveI	ACCTGC	1 cut(s)	3583
Cac8I	GCNNGC	7 cut(s)	176, 816, 1834, 2571, 2779, 3182, 3421
CaiI	CAGNNNCTG	2 cut(s)	3137, 3592
CciI	TCATGA	1 cut(s)	1387
CfoI	GCGC	1 cut(s)	1008
Cfr13I	GGNCC	7 cut(s)	794, 1397, 2024, 2637, 3156, 3286, 3364
CseI	GACGC	2 cut(s)	890, 1943
CsiI	ACCWGGT	2 cut(s)	1249, 2410
CspCI	CAANNNNNGTGG	2 cut(s)	1075, 1110
DinI	GGCGCC	1 cut(s)	1007
DpnI	GATC	8 cut(s)	600, 942, 1263, 1949, 1991, 2245, 2316, 2913
DpnII	GATC	8 cut(s)	598, 940, 1261, 1947, 1989, 2243, 2314, 2911
DraI	TTTAAA	2 cut(s)	1654, 2017
EaeI	YGGCCR	2 cut(s)	2280, 3467
Eam1104I	CTCTTC	7 cut(s)	48, 1464, 2293, 2301, 3072, 3137, 3395
EarI	CTCTTC	7 cut(s)	48, 1464, 2293, 2301, 3072, 3137, 3395
Ecl136II	GAGCTC	3 cut(s)	868, 1220, 1326
Eco130I	CCWWGG	4 cut(s)	651, 883, 892, 2991
Eco24I	GRGCYC	4 cut(s)	870, 1222, 1328, 2222
Eco31I	GGTCTC	1 cut(s)	882
Eco47I	GGWCC	4 cut(s)	794, 1397, 2024, 3364
Eco53kI	GAGCTC	3 cut(s)	868, 1220, 1326
Eco57I	CTGAAG	6 cut(s)	45, 423, 819, 2061, 2289, 2688
Eco81I	CCTNAGG	2 cut(s)	92, 1406
Eco88I	CYCGRG	1 cut(s)	673
Eco91I	GGTNACC	1 cut(s)	2498
EcoICRI	GAGCTC	3 cut(s)	868, 1220, 1326
EcoNI	CCTNNNNNAGG	2 cut(s)	2180, 2810
EcoO109I	RGGNCCY	2 cut(s)	794, 3364
EcoO65I	GGTNACC	1 cut(s)	2498
EcoRI	GAATTC	1 cut(s)	2764
EcoRII	CCWGG	7 cut(s)	1249, 1777, 2401, 2410, 2455, 2746, 3424
EcoT14I	CCWWGG	4 cut(s)	651, 883, 892, 2991
EcoT38I	GRGCYC	4 cut(s)	870, 1222, 1328, 2222
EgeI	GGCGCC	1 cut(s)	1007
EheI	GGCGCC	1 cut(s)	1007
ErhI	CCWWGG	4 cut(s)	651, 883, 892, 2991
Esp3I	CGTCTC	1 cut(s)	3457
FalI	AAGNNNNNCTT	2 cut(s)	3192, 3224
FaqI	GGGAC	4 cut(s)	807, 1410, 2375, 3350
FauNDI	CATATG	5 cut(s)	541, 849, 1335, 2106, 3482
FbaI	TGATCA	1 cut(s)	1947
FblI	GTMKAC	2 cut(s)	386, 2987
FokI	GGATG	5 cut(s)	631, 787, 1448, 2483, 2730
FriOI	GRGCYC	4 cut(s)	870, 1222, 1328, 2222
FspBI	CTAG	5 cut(s)	255, 455, 836, 884, 1533
GlaI	GCGC	1 cut(s)	1007
GsaI	CCCAGC	1 cut(s)	3225
GsuI	CTGGAG	3 cut(s)	2478, 3099, 3114
HaeII	RGCGCY	1 cut(s)	1009
HaeIII	GGCC	8 cut(s)	1789, 2282, 2479, 2639, 3158, 3287, 3469, 3515
HapII	CCGG	6 cut(s)	75, 323, 1908, 2027, 2358, 2634
HgaI	GACGC	2 cut(s)	890, 1943
HhaI	GCGC	1 cut(s)	1008
Hin1I	GRCGYC	1 cut(s)	1006
Hin6I	GCGC	1 cut(s)	1006
HinP1I	GCGC	1 cut(s)	1006
HincII	GTYRAC	1 cut(s)	1813
HindII	GTYRAC	1 cut(s)	1813
HindIII	AAGCTT	1 cut(s)	2954
HpaII	CCGG	6 cut(s)	75, 323, 1908, 2027, 2358, 2634
Hpy166II	GTNNAC	8 cut(s)	387, 529, 1813, 1882, 2128, 2173, 2485, 2988
Hpy8I	GTNNAC	8 cut(s)	387, 529, 1813, 1882, 2128, 2173, 2485, 2988
Hpy99I	CGWCG	2 cut(s)	230, 2139
HpyCH4III	ACNGT	9 cut(s)	217, 300, 376, 526, 1210, 1876, 2433, 2556, 3033
HpyCH4IV	ACGT	1 cut(s)	2734
HpySE526I	ACGT	1 cut(s)	2734
Hsp92I	GRCGYC	1 cut(s)	1006
HspAI	GCGC	1 cut(s)	1006
KasI	GGCGCC	1 cut(s)	1005
Kpn2I	TCCGGA	2 cut(s)	74, 1907
Ksp22I	TGATCA	1 cut(s)	1947
Kzo9I	GATC	8 cut(s)	598, 940, 1261, 1947, 1989, 2243, 2314, 2911
LguI	GCTCTTC	3 cut(s)	1464, 3072, 3395
LmnI	GCTCC	7 cut(s)	227, 865, 1273, 1379, 1481, 1514, 2217
LweI	GCATC	4 cut(s)	290, 1168, 1513, 3354
MabI	ACCWGGT	2 cut(s)	1249, 2410
MaeI	CTAG	5 cut(s)	255, 455, 836, 884, 1533
MaeII	ACGT	1 cut(s)	2734
MalI	GATC	8 cut(s)	600, 942, 1263, 1949, 1991, 2245, 2316, 2913
MbiI	CCGCTC	2 cut(s)	29, 2542
MboI	GATC	8 cut(s)	598, 940, 1261, 1947, 1989, 2243, 2314, 2911
MfeI	CAATTG	1 cut(s)	3564
MflI	RGATCY	2 cut(s)	940, 2243
MhlI	GDGCHC	6 cut(s)	870, 1222, 1328, 2075, 2222, 2790
MlsI	TGGCCA	2 cut(s)	2282, 3469
MluNI	TGGCCA	2 cut(s)	2282, 3469
Mly113I	GGCGCC	1 cut(s)	1006
MlyI	GAGTC	6 cut(s)	1730, 2693, 2993, 3062, 3106, 3456
MmeI	TCCRAC	7 cut(s)	409, 430, 977, 1037, 1040, 1048, 1413
Mox20I	TGGCCA	2 cut(s)	2282, 3469
MroI	TCCGGA	2 cut(s)	74, 1907
MroXI	GAANNNNTTC	1 cut(s)	1614
MscI	TGGCCA	2 cut(s)	2282, 3469
MslI	CAYNNNNRTG	5 cut(s)	860, 1877, 1901, 2492, 2808
Msp20I	TGGCCA	2 cut(s)	2282, 3469
MspA1I	CMGCKG	2 cut(s)	749, 2158
MspI	CCGG	6 cut(s)	75, 323, 1908, 2027, 2358, 2634
MspR9I	CCNGG	9 cut(s)	1251, 1779, 2359, 2403, 2412, 2457, 2635, 2748, 3426
MunI	CAATTG	1 cut(s)	3564
Mva1269I	GAATGC	3 cut(s)	154, 2587, 2779
MvaI	CCWGG	7 cut(s)	1251, 1779, 2403, 2412, 2457, 2748, 3426
NarI	GGCGCC	1 cut(s)	1006
NciI	CCSGG	2 cut(s)	2359, 2635
NcoI	CCATGG	1 cut(s)	892
NdeI	CATATG	5 cut(s)	541, 849, 1335, 2106, 3482
NdeII	GATC	8 cut(s)	598, 940, 1261, 1947, 1989, 2243, 2314, 2911
NmeAIII	GCCGAG	1 cut(s)	623
NmuCI	GTSAC	6 cut(s)	678, 925, 934, 1153, 1733, 2498
NspI	RCATGY	3 cut(s)	2623, 3423, 3476
OliI	CACNNNNGTG	1 cut(s)	1877
PaeI	GCATGC	1 cut(s)	3423
PagI	TCATGA	1 cut(s)	1387
PaqCI	CACCTGC	1 cut(s)	3583
PciI	ACATGT	2 cut(s)	2619, 3472
PciSI	GCTCTTC	3 cut(s)	1464, 3072, 3395
PctI	GAATGC	3 cut(s)	154, 2587, 2779
PdmI	GAANNNNTTC	1 cut(s)	1614
PfeI	GAWTC	8 cut(s)	19, 1615, 1682, 2227, 2663, 2678, 2899, 3134
PflFI	GACNNNGTC	1 cut(s)	900
PflMI	CCANNNNNTGG	1 cut(s)	3137
PfoI	TCCNGGA	2 cut(s)	2401, 2746
PleI	GAGTC	6 cut(s)	1730, 2693, 2992, 3061, 3106, 3455
PluTI	GGCGCC	1 cut(s)	1009
PpsI	GAGTC	6 cut(s)	1730, 2693, 2992, 3061, 3106, 3455
PpuMI	RGGWCCY	2 cut(s)	794, 3364
PscI	ACATGT	2 cut(s)	2619, 3472
PshAI	GACNNNNGTC	1 cut(s)	932
PshBI	ATTAAT	2 cut(s)	1818, 3279
Psp124BI	GAGCTC	3 cut(s)	870, 1222, 1328
Psp1406I	AACGTT	1 cut(s)	2734
Psp5II	RGGWCCY	2 cut(s)	794, 3364
Psp6I	CCWGG	7 cut(s)	1249, 1777, 2401, 2410, 2455, 2746, 3424
PspEI	GGTNACC	1 cut(s)	2498
PspFI	CCCAGC	1 cut(s)	3221
PspGI	CCWGG	7 cut(s)	1249, 1777, 2401, 2410, 2455, 2746, 3424
PspPI	GGNCC	7 cut(s)	794, 1397, 2024, 2637, 3156, 3286, 3364
PspPPI	RGGWCCY	2 cut(s)	794, 3364
PsrI	GAACNNNNNNTAC	2 cut(s)	309, 341
PstI	CTGCAG	2 cut(s)	880, 3493
PstNI	CAGNNNCTG	2 cut(s)	3137, 3592
PsuI	RGATCY	2 cut(s)	940, 2243
PsyI	GACNNNGTC	1 cut(s)	900
PvuII	CAGCTG	2 cut(s)	749, 2158
RseI	CAYNNNNRTG	5 cut(s)	860, 1877, 1901, 2492, 2808
SacI	GAGCTC	3 cut(s)	870, 1222, 1328
SapI	GCTCTTC	3 cut(s)	1464, 3072, 3395
Sau3AI	GATC	8 cut(s)	598, 940, 1261, 1947, 1989, 2243, 2314, 2911
Sau96I	GGNCC	7 cut(s)	794, 1397, 2024, 2637, 3156, 3286, 3364
SchI	GAGTC	6 cut(s)	1730, 2693, 2993, 3062, 3106, 3456
ScrFI	CCNGG	9 cut(s)	1251, 1779, 2359, 2403, 2412, 2457, 2635, 2748, 3426
SduI	GDGCHC	6 cut(s)	870, 1222, 1328, 2075, 2222, 2790
SexAI	ACCWGGT	2 cut(s)	1249, 2410
SfaNI	GCATC	4 cut(s)	290, 1168, 1513, 3354
SfcI	CTRYAG	2 cut(s)	876, 3489
SfoI	GGCGCC	1 cut(s)	1007
SinI	GGWCC	4 cut(s)	794, 1397, 2024, 3364
SmiMI	CAYNNNNRTG	5 cut(s)	860, 1877, 1901, 2492, 2808
SmlI	CTYRAG	6 cut(s)	276, 636, 1463, 2050, 2318, 2930
SmoI	CTYRAG	6 cut(s)	276, 636, 1463, 2050, 2318, 2930
SphI	GCATGC	1 cut(s)	3423
SsiI	CCGC	8 cut(s)	5, 11, 27, 1993, 2542, 2708, 3240, 3329
SspDI	GGCGCC	1 cut(s)	1005
SspMI	CTAG	5 cut(s)	255, 455, 836, 884, 1533
SstI	GAGCTC	3 cut(s)	870, 1222, 1328
StyD4I	CCNGG	9 cut(s)	1249, 1777, 2357, 2401, 2410, 2455, 2633, 2746, 3424
StyI	CCWWGG	4 cut(s)	651, 883, 892, 2991
TaaI	ACNGT	9 cut(s)	217, 300, 376, 526, 1210, 1876, 2433, 2556, 3033
TaiI	ACGT	1 cut(s)	2737
TaqI	TCGA	5 cut(s)	228, 1772, 1798, 2112, 2757
TatI	WGTACW	3 cut(s)	331, 2127, 3120
TauI	GCSGC	2 cut(s)	7, 3242
TfiI	GAWTC	8 cut(s)	19, 1615, 1682, 2227, 2663, 2678, 2899, 3134
TseFI	GTSAC	6 cut(s)	678, 925, 934, 1153, 1733, 2498
Tsp45I	GTSAC	6 cut(s)	678, 925, 934, 1153, 1733, 2498
TspGWI	ACGGA	6 cut(s)	214, 787, 2152, 2230, 2676, 2988
Tth111I	GACNNNGTC	1 cut(s)	900
Van91I	CCANNNNNTGG	1 cut(s)	3137
VpaK11BI	GGWCC	4 cut(s)	794, 1397, 2024, 3364
VspI	ATTAAT	2 cut(s)	1818, 3279
XagI	CCTNNNNNAGG	2 cut(s)	2180, 2810
XapI	RAATTY	7 cut(s)	517, 578, 1562, 1958, 2764, 2944, 3262
XbaI	TCTAGA	1 cut(s)	1532
XceI	RCATGY	3 cut(s)	2623, 3423, 3476
XcmI	CCANNNNNNNNNTGG	1 cut(s)	182
XmaJI	CCTAGG	1 cut(s)	883
XmiI	GTMKAC	2 cut(s)	386, 2987
XmnI	GAANNNNTTC	1 cut(s)	1614
XspI	CTAG	5 cut(s)	255, 455, 836, 884, 1533

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.