Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0003227

Physical Location & Seq

Genomic Coordinates Forward (+)

6140185 .. 6144153

Gene Structure 3969 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG031200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3060 bp

ATGGATAATTTAATGGAAAAGTTTAGTGTAGACGACTCGACGTATGCTCAGGTGCAAGTCCGAGCTACTTTCTATCCCAAGTTTGAGAATGAGAAGTCCGATCAGGAGGTTAGGACAAGGATGATAGAGTTGGTGTCGAAAGGGTTGGCTACATTGGAGGTTTCCCTCAAGCACTCGGGGTCACTTTTTATGTATGCTGGTAGTGAGGGTGGTGCGTATGCGAAAAATAGCTTTGGGAATATATATACTGCTGTGGGTGTGTTTGTTCTGGGGAGGATGTTTCGTGAGGCGTGGGGATCAGAAGCAGCAAGGATGCAAGCAGAGTTTAATGATTTTCTTGAGAGGAACCGTATGTGTATATCAATGGAACTTGTGACTGCTGTTCTAGGAGATCATGGACAGCGTCCGAAAGAAGATTTTGTTGTGGTCACGGCCGTCACGGAGTTGGGCAATGGGAAGCCAAAGTTCTACTCAACTCCCGAGATTATTGCATTCTGTCGGAATTGGCGCCTGCCCACAAATCATGTATGGCTGTTCTCAACAAGGAAAGCAGTGACATCTTTTTTTGCTGCTTTTGATGCCCTGTCTGAAGAAGGAACTGCAACAAGTGTATGCAGAGCTCTTGATGAAGTTGCAGATATATCTATACCAGGTTCCAAAGATCACATCAAGGTGCAAGGTGAAATCTTAGAGGGTATTGTTGCTCGTATTGTAAGCCATGAGAGCTCAAAGCATATGGAGAAAGTCTTAAAAGATTTCCCTCCTCCACCAATGGAAGGAGCTGGTCTTGATTTGGGACCAAGCCTAAGGGAGATTTGCGCTGCAAATAGGTCTGATGAAACACAGCAAATAAAAGCACTTCTTAAGGGTGTCGGCTCCTCTTTTTGTCCTGACCATTCAGACTGGCTTGGGCCTGGAGCTGGTGATGCACATTCTAAAAATGTAGATCAATCAGTGCTATCAAAATTTTTAAAATCTCATCCTGCTGATTTTTCTACCACCAAATTGCAGGAAGTGGTTTGTTTGATGAGAGAAAAGCGTTTACCTGCTGCCTTTAAATGCTACCAGAACTACCACAAGCATGATTCCATGTCCAGTGACAACGTTTTCTATAAAATGGTCATTCATGTCCGTAGCGACTCTGCATTTCAGCGGTATCAGAAAGAGATGAAGTCAAAGCCAGGACTGTGGCCTTTATATCGAGGTTTTTTCGTTGACATTAATTTGTTCAAGGCAAACAAGGAGAGAGCTGCTGAGATTGCAAAAAACAAAAGCACTGTTGTGGACATAAATGGGGGCTGTGGTATGTCAGGAAAACATGGATTGGCGGAAGAAGATGCAAACTTAATGATCAAATTGAAATTTCTTACATATAAGCTGCGAACTTTTTTGATCCGCAATGGTTTATCAACTCTATTTAAACAAGGTCCGGCTGCTTATAAAGCCTATTACTTGAGGCAAATGAAAATATGGGGCACTTCAGCAGGAAAGCAGAGGGAACTCAGCAAGATGCTTGATGAATGGGCTGTGTACATACGAAGGAAATGTGGAAACAAACACATGTCGTCATCAGTGTACCTCAGCGAGGCTGAGCCTTTCCTTGAACAGTATGCAAAACGTAGCCCACAGAATCAGGCTCTTATAGGATCTGCCGGAAACTTGGTAAATGCTGAAAACTTCTTGGCCATAGTTGAGGGAGGAATAGATGAAGAGGGTGATCTCGAGAAGGAGTCTGTACCATCAAGCCCCAGTGCCTCAGTTGCAGACACCATTCCAAAGGCTGAGGGTCTGATTGTATTCTTTCCTGGACTACCTGGTTCTGCCAAGTCAGCACTATGCAAGGAACTACTCAAAGCCCCGGGAGGATTTGGGGATGATCGGCCAGTTCAAAGTCTAATGGGTGATCTTGTTAAAGGAAAATATTGGCAGAAGGTCGCTGATCAGTGCAGGAAAAAACCATATTCTATAATGCTCGCAGACAAGAATGCACCAAACGTAGAAGTGTGGAGACAGGTCGAAGACATGTGCCACAGAACAAGGGCCTCTGCTGTACCAGTTGTTCCTGATTCTGAAGGAACTGAATCAAATCCGTTTTCTCTTGACGCATTAGCGGTTTTCATGTTTCGTGTGCTTCAACGTGCTAATCATCCGGGAAACCTTGACAAAAATTCACCGAATGCTGGCTATGTTCTGCTAATGTTCTATCACCTTTATGAGGGCAAGACTCGGAGAGAATTTGAGTCTGAACTAGTTGAGCGTTTTGGTTCACTTGTCAAAATACCACTGCTGACATCGGAGAGGAATCCATTACCGGATCCTGTGAAATCAACTCTTGAGGATGGAATAAATTTATACAACCTTCACACTGATAGACATGGAAGATGGGATTCAAGCAGGGGAGCCTACACAAAGGAGTGGGCTAAATGGGAGAAACAGTTGCGAGAGGTTTTGTTTGGCAATGCACGGTATTTTAATTCTGTTCAAGTTCCCTTTGAGTCTTCTGTTAAGGAAGTATCAGAACAGCTAAGAAAGATTGCAAAAGGTGAGTATAAGACTCCAGAGTACCCAGAGTACAGGACTTCAGATTCTGGGAAGAGGAAGATCTCGGCCATTACATTTGCTGCCATCAACCTGCCTATTACCGATATCAAAGGTTTGCTTGATAATTTGGCTGGGAAAGATAGTAAAGTCGAAGCTTTTCTAAAAGACAAGAATTTGGAGAACAGCATTAATAAGGCTCATGTTACTCTTGCGCACAAGAGAAGTCATGGTGTTACTGCCGTGGCTAATTATGGCACCTTCCTACACAAACAGGTCCCTGTGGATATAACTGCACTTCTCTTCACGGATAAAATGGCTGCATTCGAAGCTTGCCCTGGCTCTGTTGAAGGTGAAAGAGTCACCCCCAAAAATGAATGGCCTCATGTTACCTTATGGACAGCAGAGGGTGTTTTAGCCAAGGAGGCCAACTTGTTAAGCAATTTGCATTTAGAGGGCAAGGCTACCCGTATTGCGATTGACCCACCTGCCACCATTCATGGGACGCTGGAGTTTTACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000278 GO:0000281 GO:0000394 GO:0000910 GO:0003006 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003824 GO:0003972 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006388 GO:0006396 GO:0006399 GO:0006725 GO:0006807 GO:0007049 GO:0007275 GO:0008033 GO:0008150 GO:0008152 GO:0008356 GO:0008380 GO:0008452 GO:0009790 GO:0009791 GO:0009793 GO:0009966 GO:0009987 GO:0010069 GO:0010070 GO:0010154 GO:0010467 GO:0010646 GO:0010928 GO:0016070 GO:0016874 GO:0016886 GO:0022402 GO:0022414 GO:0023051 GO:0032501 GO:0032502 GO:0034470 GO:0034641 GO:0034660 GO:0042245 GO:0043170 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0048316 GO:0048583 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0051301 GO:0061458 GO:0061640 GO:0065007 GO:0071704 GO:0090304 GO:0097159 GO:0140098 GO:1901360 GO:1901363 GO:1903047

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

tRNA_lig_CPD

Protein Analysis

1019

Amino Acids

113.68

Weight (kDa)

8.38

Isoelectric Point (pI)

35.17

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003227)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G07910 AT1G07910
fragaria_vesca	FvH4_3g33360 FvH4_3g33360 FvH4_3g33360 FvH4_3g33360 FvH4_3g33360 FvH4_3g33360 FvH4_3g33360 FvH4_3g33360 FvH4_4g02320
malus_domestica	MD03G1112400.v1.1 MD11G1129800.v1.1
prunus_persica	Prupe.6G094700_v2.0.a1
pyrus_communis	pycom11g10750 pycom11g10760
rosa_chinensis	RchiOBHm_Chr4g0389641 RchiOBHm_Chr5g0060751
rosa_laevigata	RLG00000009964 RLG00000035390
rosa_multiflora	Rmu_co8520825.1_g000001 Rmu_sc0006568.1_g000004 Rmu_sc0007419.1_g000006
rosa_roxburghii	Rroxscaffold_1G00019960 Rroxscaffold_5G00335630
rosa_rugosa	Rorug03G0324600 Rorug05G0333400
rosa_samantha	Rh4AG029200 Rh4BG022400 Rh4CG031200 Rh4DG022900 Rh5AG396400 Rh5BG408600 Rh5CG433200 Rh5DG423800
rosa_wichuraiana	Rw4G002180 Rw5G037370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1440
AarI	CACCTGC	1 cut(s)	3034
Acc16I	TGCGCA	1 cut(s)	2754
Acc36I	ACCTGC	3 cut(s)	1054, 2640, 3034
AccB1I	GGYRCC	2 cut(s)	507, 2795
AccI	GTMKAC	1 cut(s)	30
AciI	CCGC	4 cut(s)	1153, 1328, 1396, 2111
AclI	AACGTT	1 cut(s)	1104
AclWI	GGATC	5 cut(s)	304, 1387, 1654, 2309, 2322
AcoI	YGGCCR	4 cut(s)	432, 1683, 1880, 2607
AcsI	RAATTY	6 cut(s)	965, 1361, 2167, 2234, 2347, 2713
AcuI	CTGAAG	4 cut(s)	609, 1464, 2091, 2565
AcyI	GRCGYC	1 cut(s)	508
AfaI	GTAC	6 cut(s)	1532, 1577, 1737, 2052, 2564, 2573
AfiI	CCNNNNNNNGG	6 cut(s)	776, 920, 1585, 2180, 2215, 3039
AflII	CTTAAG	1 cut(s)	863
AflIII	ACRYGT	2 cut(s)	1560, 2022
AgsI	TTSAA	8 cut(s)	1231, 1360, 1604, 1889, 2135, 2391, 2483, 2888
AhlI	ACTAGT	1 cut(s)	2248
AjnI	CCWGG	6 cut(s)	649, 913, 1180, 1804, 1813, 2875
AleI	CACNNNNGTG	1 cut(s)	1280
Alw21I	GWGCWC	2 cut(s)	622, 728
Alw26I	GTCTC	1 cut(s)	2002
AlwI	GGATC	5 cut(s)	304, 1387, 1654, 2309, 2322
AlwNI	CAGNNNCTG	1 cut(s)	2588
Ama87I	CYCGRG	4 cut(s)	175, 479, 1721, 1858
AoxI	GGCC	9 cut(s)	432, 911, 1190, 1683, 1880, 2040, 2607, 2918, 2964
ApeKI	GCWGC	9 cut(s)	305, 569, 821, 1049, 1250, 1378, 1433, 2621, 2858
ApoI	RAATTY	6 cut(s)	965, 1361, 2167, 2234, 2347, 2713
AseI	ATTAAT	2 cut(s)	1221, 2730
Asp700I	GAANNNNTTC	1 cut(s)	2697
AspLEI	GCGC	3 cut(s)	510, 821, 2755
AspS9I	GGNCC	5 cut(s)	797, 911, 1427, 2040, 2815
AsuC2I	CCSGG	3 cut(s)	1859, 1860, 2151
AsuHPI	GGTGA	9 cut(s)	692, 935, 1727, 1913, 2163, 2198, 2555, 2893, 2903
AsuII	TTCGAA	1 cut(s)	2865
AvaI	CYCGRG	4 cut(s)	175, 479, 1721, 1858
AvaII	GGWCC	3 cut(s)	797, 1427, 2815
AxyI	CCTNAGG	1 cut(s)	806
BaeGI	GKGCMC	1 cut(s)	1478
BalI	TGGCCA	1 cut(s)	1685
BamHI	GGATCC	1 cut(s)	2314
BanI	GGYRCC	2 cut(s)	507, 2795
BanII	GRGCYC	2 cut(s)	622, 728
BbsI	GAAGAC	2 cut(s)	2025, 2490
Bbv12I	GWGCWC	2 cut(s)	622, 728
BbvCI	CCTCAGC	2 cut(s)	1580, 1782
BbvI	GCAGC	9 cut(s)	317, 556, 808, 1036, 1237, 1365, 1420, 2608, 2845
BccI	CCATC	4 cut(s)	1747, 2333, 2376, 2633
BceAI	ACGGC	3 cut(s)	419, 447, 2765
BcgI	CGANNNNNNTGC	2 cut(s)	470, 504
BciT130I	CCWGG	6 cut(s)	651, 915, 1182, 1806, 1815, 2877
BclI	TGATCA	2 cut(s)	1350, 1939
BcnI	CCSGG	3 cut(s)	1859, 1860, 2151
BcoDI	GTCTC	1 cut(s)	2002
BcuI	ACTAGT	1 cut(s)	2248
BfaI	CTAG	2 cut(s)	386, 2249
BfoI	RGCGCY	1 cut(s)	511
BfrI	CTTAAG	1 cut(s)	863
BfuAI	ACCTGC	3 cut(s)	1054, 2640, 3034
BglI	GCCNNNNNGGC	1 cut(s)	2963
BglII	AGATCT	1 cut(s)	2601
BisI	GCNGC	9 cut(s)	306, 570, 822, 1050, 1251, 1379, 1434, 2622, 2859
BlpI	GCTNAGC	1 cut(s)	1590
BlsI	GCNGC	9 cut(s)	307, 571, 823, 1051, 1252, 1380, 1435, 2623, 2860
Bme1390I	CCNGG	9 cut(s)	651, 915, 1182, 1806, 1815, 1859, 1860, 2151, 2877
Bme18I	GGWCC	3 cut(s)	797, 1427, 2815
BmeT110I	CYCGRG	4 cut(s)	175, 479, 1721, 1858
BmgT120I	GGNCC	5 cut(s)	797, 911, 1427, 2040, 2815
BmiI	GGNNCC	9 cut(s)	347, 509, 655, 798, 877, 2316, 2401, 2797, 2817
BmrFI	CCNGG	9 cut(s)	651, 915, 1182, 1806, 1815, 1859, 1860, 2151, 2877
BmrI	ACTGGG	1 cut(s)	1743
BmsI	GCATC	5 cut(s)	303, 568, 916, 1327, 1500
BmuI	ACTGGG	1 cut(s)	1743
BpiI	GAAGAC	2 cut(s)	2025, 2490
BpmI	CTGGAG	2 cut(s)	936, 2541
Bpu10I	CCTNAGC	3 cut(s)	48, 1580, 1782
Bpu1102I	GCTNAGC	1 cut(s)	1590
Bpu14I	TTCGAA	1 cut(s)	2865
BpuEI	CTTGAG	4 cut(s)	152, 359, 1474, 2354
BpuMI	CCSGG	3 cut(s)	1859, 1860, 2151
BsaHI	GRCGYC	1 cut(s)	508
BsaJI	CCNNGG	5 cut(s)	1857, 1858, 2781, 2875, 2958
BsaWI	WCCGGW	1 cut(s)	2311
BsaXI	ACNNNNNCTCC	2 cut(s)	2420, 2450
Bsc4I	CCNNNNNNNGG	6 cut(s)	776, 920, 1585, 2180, 2215, 3039
Bse1I	ACTGG	5 cut(s)	908, 1095, 1749, 1883, 2054
Bse21I	CCTNAGG	1 cut(s)	806
Bse3DI	GCAATG	3 cut(s)	457, 1405, 2464
BseBI	CCWGG	6 cut(s)	651, 915, 1182, 1806, 1815, 2877
BseDI	CCNNGG	5 cut(s)	1857, 1858, 2781, 2875, 2958
BseGI	GGATG	7 cut(s)	126, 282, 318, 979, 1879, 2146, 2344
BseLI	CCNNNNNNNGG	6 cut(s)	776, 920, 1585, 2180, 2215, 3039
BseMI	GCAATG	3 cut(s)	457, 1405, 2464
BseMII	CTCAG	7 cut(s)	62, 1245, 1516, 1581, 1594, 1770, 1773
BseNI	ACTGG	5 cut(s)	908, 1095, 1749, 1883, 2054
BseRI	GAGGAG	2 cut(s)	753, 868
BseSI	GKGCMC	1 cut(s)	1478
BseX3I	CGGCCG	1 cut(s)	432
BseXI	GCAGC	9 cut(s)	317, 556, 808, 1036, 1237, 1365, 1420, 2608, 2845
BseYI	CCCAGC	1 cut(s)	2672
BsgI	GTGCAG	2 cut(s)	1966, 2817
Bsh1285I	CGRYCG	1 cut(s)	435
BshFI	GGCC	9 cut(s)	434, 913, 1192, 1685, 1882, 2042, 2609, 2920, 2966
BshNI	GGYRCC	2 cut(s)	507, 2795
BsiEI	CGRYCG	1 cut(s)	435
BsiHKAI	GWGCWC	2 cut(s)	622, 728
BsiHKCI	CYCGRG	4 cut(s)	175, 479, 1721, 1858
BsiSI	CCGG	5 cut(s)	1430, 1653, 1859, 2150, 2312
BslFI	GGGAC	3 cut(s)	810, 2801, 3055
BslI	CCNNNNNNNGG	6 cut(s)	776, 920, 1585, 2180, 2215, 3039
BsmAI	GTCTC	1 cut(s)	2002
BsmFI	GGGAC	3 cut(s)	810, 2801, 3055
BsmI	GAATGC	4 cut(s)	491, 1990, 2182, 2861
BsnI	GGCC	9 cut(s)	434, 913, 1192, 1685, 1882, 2042, 2609, 2920, 2966
BsoBI	CYCGRG	4 cut(s)	175, 479, 1721, 1858
Bsp119I	TTCGAA	1 cut(s)	2865
Bsp1286I	GDGCHC	3 cut(s)	622, 728, 1478
Bsp1407I	TGTACA	1 cut(s)	1530
Bsp1720I	GCTNAGC	1 cut(s)	1590
BspACI	CCGC	4 cut(s)	1153, 1328, 1396, 2111
BspANI	GGCC	9 cut(s)	434, 913, 1192, 1685, 1882, 2042, 2609, 2920, 2966
BspCNI	CTCAG	7 cut(s)	61, 1246, 1515, 1582, 1593, 1769, 1774
BspLI	GGNNCC	9 cut(s)	347, 509, 655, 798, 877, 2316, 2401, 2797, 2817
BspMI	ACCTGC	3 cut(s)	1054, 2640, 3034
BspPI	GGATC	5 cut(s)	304, 1387, 1654, 2309, 2322
BspT104I	TTCGAA	1 cut(s)	2865
BspT107I	GGYRCC	2 cut(s)	507, 2795
BspTI	CTTAAG	1 cut(s)	863
BsrDI	GCAATG	3 cut(s)	457, 1405, 2464
BsrGI	TGTACA	1 cut(s)	1530
BsrI	ACTGG	5 cut(s)	908, 1095, 1749, 1883, 2054
BssECI	CCNNGG	5 cut(s)	1857, 1858, 2781, 2875, 2958
BssNI	GRCGYC	1 cut(s)	508
BssT1I	CCWWGG	1 cut(s)	2958
Bst2UI	CCWGG	6 cut(s)	651, 915, 1182, 1806, 1815, 2877
Bst4CI	ACNGT	6 cut(s)	350, 1188, 1279, 1608, 2436, 2466
Bst6I	CTCTTC	3 cut(s)	1704, 2588, 2846
BstACI	GRCGYC	1 cut(s)	508
BstAFI	CTTAAG	1 cut(s)	863
BstAUI	TGTACA	1 cut(s)	1530
BstBI	TTCGAA	1 cut(s)	2865
BstC8I	GCNNGC	5 cut(s)	318, 512, 1974, 2182, 2872
BstDSI	CCRYGG	1 cut(s)	2781
BstENI	CCTNNNNNAGG	2 cut(s)	1583, 2213
BstF5I	GGATG	7 cut(s)	126, 282, 318, 979, 1879, 2146, 2344
BstH2I	RGCGCY	1 cut(s)	511
BstHHI	GCGC	3 cut(s)	510, 821, 2755
BstMAI	GTCTC	1 cut(s)	2002
BstMCI	CGRYCG	1 cut(s)	435
BstMWI	GCNNNNNNNGC	9 cut(s)	578, 723, 926, 1259, 1442, 1760, 1829, 2867, 2963
BstNI	CCWGG	6 cut(s)	651, 915, 1182, 1806, 1815, 2877
BstNSI	RCATGY	2 cut(s)	1564, 2026
BstSCI	CCNGG	9 cut(s)	649, 913, 1180, 1804, 1813, 1857, 1858, 2149, 2875
BstSLI	GKGCMC	1 cut(s)	1478
BstV1I	GCAGC	9 cut(s)	317, 556, 808, 1036, 1237, 1365, 1420, 2608, 2845
BstV2I	GAAGAC	2 cut(s)	2025, 2490
BstX2I	RGATCY	3 cut(s)	1646, 2314, 2601
BstXI	CCANNNNNNTGG	1 cut(s)	1188
BstYI	RGATCY	3 cut(s)	1646, 2314, 2601
BstZI	CGGCCG	1 cut(s)	432
Bsu36I	CCTNAGG	1 cut(s)	806
BsuRI	GGCC	9 cut(s)	434, 913, 1192, 1685, 1882, 2042, 2609, 2920, 2966
BtgI	CCRYGG	1 cut(s)	2781
BtsCI	GGATG	7 cut(s)	126, 282, 318, 979, 1879, 2146, 2344
BtsI	GCAGTG	2 cut(s)	558, 2282
BtsIMutI	CAGTG	9 cut(s)	558, 960, 1102, 1275, 1578, 1756, 1949, 2282, 2364
BveI	ACCTGC	3 cut(s)	1054, 2640, 3034
Cac8I	GCNNGC	5 cut(s)	318, 512, 1974, 2182, 2872
CaiI	CAGNNNCTG	1 cut(s)	2588
CfoI	GCGC	3 cut(s)	510, 821, 2755
Cfr13I	GGNCC	5 cut(s)	797, 911, 1427, 2040, 2815
Cfr9I	CCCGGG	1 cut(s)	1858
CseI	GACGC	3 cut(s)	392, 2111, 3052
CsiI	ACCWGGT	2 cut(s)	649, 1813
Csp6I	GTAC	6 cut(s)	1531, 1576, 1736, 2051, 2563, 2572
CviQI	GTAC	6 cut(s)	1531, 1576, 1736, 2051, 2563, 2572
DinI	GGCGCC	1 cut(s)	509
DraI	TTTAAA	3 cut(s)	972, 1057, 1420
EaeI	YGGCCR	4 cut(s)	432, 1683, 1880, 2607
EagI	CGGCCG	1 cut(s)	432
Eam1104I	CTCTTC	3 cut(s)	1704, 2588, 2846
EarI	CTCTTC	3 cut(s)	1704, 2588, 2846
EciI	GGCGGA	1 cut(s)	1343
Ecl136II	GAGCTC	2 cut(s)	620, 726
EclXI	CGGCCG	1 cut(s)	432
Eco130I	CCWWGG	1 cut(s)	2958
Eco24I	GRGCYC	2 cut(s)	622, 728
Eco32I	GATATC	1 cut(s)	2647
Eco47I	GGWCC	3 cut(s)	797, 1427, 2815
Eco52I	CGGCCG	1 cut(s)	432
Eco53kI	GAGCTC	2 cut(s)	620, 726
Eco57I	CTGAAG	4 cut(s)	609, 1464, 2091, 2565
Eco81I	CCTNAGG	1 cut(s)	806
Eco88I	CYCGRG	4 cut(s)	175, 479, 1721, 1858
EcoICRI	GAGCTC	2 cut(s)	620, 726
EcoNI	CCTNNNNNAGG	2 cut(s)	1583, 2213
EcoO109I	RGGNCCY	2 cut(s)	2040, 2815
EcoRII	CCWGG	6 cut(s)	649, 913, 1180, 1804, 1813, 2875
EcoRV	GATATC	1 cut(s)	2647
EcoT14I	CCWWGG	1 cut(s)	2958
EcoT38I	GRGCYC	2 cut(s)	622, 728
EgeI	GGCGCC	1 cut(s)	509
EheI	GGCGCC	1 cut(s)	509
ErhI	CCWWGG	1 cut(s)	2958
FalI	AAGNNNNNCTT	4 cut(s)	846, 878, 2643, 2675
FaqI	GGGAC	3 cut(s)	810, 2801, 3055
FauNDI	CATATG	1 cut(s)	735
FbaI	TGATCA	2 cut(s)	1350, 1939
FblI	GTMKAC	1 cut(s)	30
Fnu4HI	GCNGC	9 cut(s)	306, 570, 822, 1050, 1251, 1379, 1434, 2622, 2859
FokI	GGATG	7 cut(s)	133, 289, 325, 966, 1886, 2133, 2351
FriOI	GRGCYC	2 cut(s)	622, 728
Fsp4HI	GCNGC	9 cut(s)	306, 570, 822, 1050, 1251, 1379, 1434, 2622, 2859
FspBI	CTAG	2 cut(s)	386, 2249
FspI	TGCGCA	1 cut(s)	2754
GlaI	GCGC	3 cut(s)	509, 820, 2754
GluI	GCNGC	9 cut(s)	306, 570, 822, 1050, 1251, 1379, 1434, 2622, 2859
GsaI	CCCAGC	1 cut(s)	2676
GsuI	CTGGAG	2 cut(s)	936, 2541
HaeII	RGCGCY	1 cut(s)	511
HaeIII	GGCC	9 cut(s)	434, 913, 1192, 1685, 1882, 2042, 2609, 2920, 2966
HapII	CCGG	5 cut(s)	1430, 1653, 1859, 2150, 2312
HgaI	GACGC	3 cut(s)	392, 2111, 3052
HhaI	GCGC	3 cut(s)	510, 821, 2755
Hin1I	GRCGYC	1 cut(s)	508
Hin6I	GCGC	3 cut(s)	508, 819, 2753
HinP1I	GCGC	3 cut(s)	508, 819, 2753
HincII	GTYRAC	1 cut(s)	1216
HindII	GTYRAC	1 cut(s)	1216
HindIII	AAGCTT	2 cut(s)	2694, 2868
HpaII	CCGG	5 cut(s)	1430, 1653, 1859, 2150, 2312
HphI	GGTGA	9 cut(s)	692, 935, 1727, 1913, 2163, 2198, 2555, 2893, 2903
Hpy166II	GTNNAC	7 cut(s)	31, 1043, 1216, 1285, 1531, 1576, 2267
Hpy8I	GTNNAC	7 cut(s)	31, 1043, 1216, 1285, 1531, 1576, 2267
Hpy99I	CGWCG	1 cut(s)	43
HpyAV	CCTTC	9 cut(s)	587, 770, 1533, 1720, 1924, 2066, 2369, 2809, 2882
HpyCH4III	ACNGT	6 cut(s)	350, 1188, 1279, 1608, 2436, 2466
HpyCH4IV	ACGT	5 cut(s)	41, 1104, 1618, 1995, 2137
HpyF10VI	GCNNNNNNNGC	9 cut(s)	578, 723, 926, 1259, 1442, 1760, 1829, 2867, 2963
HpySE526I	ACGT	5 cut(s)	41, 1104, 1618, 1995, 2137
Hsp92I	GRCGYC	1 cut(s)	508
HspAI	GCGC	3 cut(s)	508, 819, 2753
KasI	GGCGCC	1 cut(s)	507
Ksp22I	TGATCA	2 cut(s)	1350, 1939
LmnI	GCTCC	4 cut(s)	779, 881, 917, 2399
Lsp1109I	GCAGC	9 cut(s)	317, 556, 808, 1036, 1237, 1365, 1420, 2608, 2845
LweI	GCATC	5 cut(s)	303, 568, 916, 1327, 1500
MabI	ACCWGGT	2 cut(s)	649, 1813
MaeI	CTAG	2 cut(s)	386, 2249
MaeII	ACGT	5 cut(s)	41, 1104, 1618, 1995, 2137
MflI	RGATCY	3 cut(s)	1646, 2314, 2601
MhlI	GDGCHC	3 cut(s)	622, 728, 1478
MlsI	TGGCCA	1 cut(s)	1685
MluNI	TGGCCA	1 cut(s)	1685
Mly113I	GGCGCC	1 cut(s)	508
MlyI	GAGTC	8 cut(s)	29, 1133, 1739, 2218, 2249, 2504, 2548, 2907
MmeI	TCCRAC	1 cut(s)	479
Mox20I	TGGCCA	1 cut(s)	1685
MroXI	GAANNNNTTC	1 cut(s)	2697
MscI	TGGCCA	1 cut(s)	1685
MslI	CAYNNNNRTG	4 cut(s)	671, 1080, 1280, 2211
Msp20I	TGGCCA	1 cut(s)	1685
MspA1I	CMGCKG	1 cut(s)	1153
MspCI	CTTAAG	1 cut(s)	863
MspI	CCGG	5 cut(s)	1430, 1653, 1859, 2150, 2312
MspR9I	CCNGG	9 cut(s)	651, 915, 1182, 1806, 1815, 1859, 1860, 2151, 2877
Mva1269I	GAATGC	4 cut(s)	491, 1990, 2182, 2861
MvaI	CCWGG	6 cut(s)	651, 915, 1182, 1806, 1815, 2877
MwoI	GCNNNNNNNGC	9 cut(s)	578, 723, 926, 1259, 1442, 1760, 1829, 2867, 2963
NarI	GGCGCC	1 cut(s)	508
NciI	CCSGG	3 cut(s)	1859, 1860, 2151
NdeI	CATATG	1 cut(s)	735
NlaIV	GGNNCC	9 cut(s)	347, 509, 655, 798, 877, 2316, 2401, 2797, 2817
NmeAIII	GCCGAG	1 cut(s)	2585
NmuCI	GTSAC	7 cut(s)	180, 373, 427, 436, 553, 1097, 2899
NsbI	TGCGCA	1 cut(s)	2754
NspI	RCATGY	2 cut(s)	1564, 2026
NspV	TTCGAA	1 cut(s)	2865
OliI	CACNNNNGTG	1 cut(s)	1280
PaeR7I	CTCGAG	1 cut(s)	1721
PaqCI	CACCTGC	1 cut(s)	3034
PciI	ACATGT	2 cut(s)	1560, 2022
PctI	GAATGC	4 cut(s)	491, 1990, 2182, 2861
PdmI	GAANNNNTTC	1 cut(s)	2697
PfeI	GAWTC	7 cut(s)	1085, 1630, 2066, 2081, 2302, 2387, 2585
PflFI	GACNNNGTC	1 cut(s)	402
PfoI	TCCNGGA	2 cut(s)	1804, 2149
PkrI	GCNGC	9 cut(s)	307, 571, 823, 1051, 1252, 1380, 1435, 2623, 2860
PleI	GAGTC	8 cut(s)	29, 1133, 1738, 2218, 2248, 2503, 2548, 2906
PluTI	GGCGCC	1 cut(s)	511
PpsI	GAGTC	8 cut(s)	29, 1133, 1738, 2218, 2248, 2503, 2548, 2906
PpuMI	RGGWCCY	1 cut(s)	2815
PscI	ACATGT	2 cut(s)	1560, 2022
PshBI	ATTAAT	2 cut(s)	1221, 2730
PsiI	TTATAA	1 cut(s)	1440
Psp124BI	GAGCTC	2 cut(s)	622, 728
Psp1406I	AACGTT	1 cut(s)	1104
Psp5II	RGGWCCY	1 cut(s)	2815
Psp6I	CCWGG	6 cut(s)	649, 913, 1180, 1804, 1813, 2875
PspFI	CCCAGC	1 cut(s)	2672
PspGI	CCWGG	6 cut(s)	649, 913, 1180, 1804, 1813, 2875
PspN4I	GGNNCC	9 cut(s)	347, 509, 655, 798, 877, 2316, 2401, 2797, 2817
PspPI	GGNCC	5 cut(s)	797, 911, 1427, 2040, 2815
PspPPI	RGGWCCY	1 cut(s)	2815
PsrI	GAACNNNNNNTAC	2 cut(s)	2043, 2075
PstNI	CAGNNNCTG	1 cut(s)	2588
PsuI	RGATCY	3 cut(s)	1646, 2314, 2601
PsyI	GACNNNGTC	1 cut(s)	402
RsaI	GTAC	6 cut(s)	1532, 1577, 1737, 2052, 2564, 2573
RsaNI	GTAC	6 cut(s)	1531, 1576, 1736, 2051, 2563, 2572
RseI	CAYNNNNRTG	4 cut(s)	671, 1080, 1280, 2211
SacI	GAGCTC	2 cut(s)	622, 728
SatI	GCNGC	9 cut(s)	306, 570, 822, 1050, 1251, 1379, 1434, 2622, 2859
Sau96I	GGNCC	5 cut(s)	797, 911, 1427, 2040, 2815
SchI	GAGTC	8 cut(s)	29, 1133, 1739, 2218, 2249, 2504, 2548, 2907
ScrFI	CCNGG	9 cut(s)	651, 915, 1182, 1806, 1815, 1859, 1860, 2151, 2877
SduI	GDGCHC	3 cut(s)	622, 728, 1478
SexAI	ACCWGGT	2 cut(s)	649, 1813
SfaNI	GCATC	5 cut(s)	303, 568, 916, 1327, 1500
SfoI	GGCGCC	1 cut(s)	509
Sfr274I	CTCGAG	1 cut(s)	1721
SfuI	TTCGAA	1 cut(s)	2865
SinI	GGWCC	3 cut(s)	797, 1427, 2815
SlaI	CTCGAG	1 cut(s)	1721
SmaI	CCCGGG	1 cut(s)	1860
SmiMI	CAYNNNNRTG	4 cut(s)	671, 1080, 1280, 2211
SmlI	CTYRAG	6 cut(s)	167, 338, 863, 1453, 1721, 2333
SmoI	CTYRAG	6 cut(s)	167, 338, 863, 1453, 1721, 2333
SpeI	ACTAGT	1 cut(s)	2248
SsiI	CCGC	4 cut(s)	1153, 1328, 1396, 2111
SspDI	GGCGCC	1 cut(s)	507
SspI	AATATT	1 cut(s)	1922
SspMI	CTAG	2 cut(s)	386, 2249
SstI	GAGCTC	2 cut(s)	622, 728
StyD4I	CCNGG	9 cut(s)	649, 913, 1180, 1804, 1813, 1857, 1858, 2149, 2875
StyI	CCWWGG	1 cut(s)	2958
TaaI	ACNGT	6 cut(s)	350, 1188, 1279, 1608, 2436, 2466
TaiI	ACGT	5 cut(s)	44, 1107, 1621, 1998, 2140
TaqI	TCGA	7 cut(s)	38, 137, 1201, 1722, 2016, 2691, 2865
TatI	WGTACW	2 cut(s)	1530, 2571
TfiI	GAWTC	7 cut(s)	1085, 1630, 2066, 2081, 2302, 2387, 2585
TscAI	CASTG	9 cut(s)	558, 960, 1102, 1282, 1578, 1756, 1949, 2289, 2371
TseFI	GTSAC	7 cut(s)	180, 373, 427, 436, 553, 1097, 2899
TseI	GCWGC	9 cut(s)	305, 569, 821, 1049, 1250, 1378, 1433, 2621, 2858
Tsp45I	GTSAC	7 cut(s)	180, 373, 427, 436, 553, 1097, 2899
TspGWI	ACGGA	4 cut(s)	455, 1121, 2079, 2861
TspMI	CCCGGG	1 cut(s)	1858
TspRI	CASTG	9 cut(s)	558, 960, 1102, 1282, 1578, 1756, 1949, 2289, 2371
Tth111I	GACNNNGTC	1 cut(s)	402
Vha464I	CTTAAG	1 cut(s)	863
VpaK11BI	GGWCC	3 cut(s)	797, 1427, 2815
VspI	ATTAAT	2 cut(s)	1221, 2730
XagI	CCTNNNNNAGG	2 cut(s)	1583, 2213
XapI	RAATTY	6 cut(s)	965, 1361, 2167, 2234, 2347, 2713
XceI	RCATGY	2 cut(s)	1564, 2026
XhoI	CTCGAG	1 cut(s)	1721
XmaI	CCCGGG	1 cut(s)	1858
XmiI	GTMKAC	1 cut(s)	30
XmnI	GAANNNNTTC	1 cut(s)	2697
XspI	CTAG	2 cut(s)	386, 2249

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.