Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0003227

Physical Location & Seq

Genomic Coordinates Reverse (-)

65907459 .. 65923030

Gene Structure 15572 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ33718

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3552 bp

ATGCCGCCTCCGCACAGGATTCTATCCGCTCTCTCCCTCACTCTTCCTCCATCTTCTTCTTCAGCCTTCGTTTCCGGAACCTTCCTCTTCCGTAGGTCATCTCCTTCCTACATAACTCCACCTCGCTCTTTCTCCTCCTCCTCCTCCATTTCTCTCTCGCATTCAACCATGCCGTACAGCCAGCGAAAGGGTGGGCAAACGTGGAGAGAGAAAACAAAGACTGACAGCTCCGTCGATAACAGACTTGGTGAATGGAGTGCTAGTGGAAGCAGTGGGCAAACTCAAGCATCAGTTCAGCCCATACAGTTTGGGAAGGTACAAGTAAATCCTGTTCCAGTACAAGGTCAAAAAGGAATATGGAAGCCTAAATCTTATGGAACTGTCAGTGGGTCTACGGCAGTAGAAGCTGAAGTACCTGTTGATAAAAGTTCGGTTGGATTAGAGCAAAATGGAGTTGGACTAGCAACTCCTCAGAAAAGTAGTTCTGGTGCAAGTAAGTTGTTCAAGGGTAATCTATTGGAAAATTTTACTGTGGACAACTCAACATATGCTCAGGTGCAAATACGAGCTACTTTCTATCCTAAATTTGAAAATGAGAAGTCAGATCAGGAGATTAGGACAAGGATGATTGAGATGGTATCTCAAGGCTTGGCTACCTTGGAGGTTTCACTTAAACACTCGGGGTCACTTTTTATGTACGCTGGTAATGAGGGCGGTGCTTATGCCAAAAACAGCTTTGGTAATATATATACAGCTGTTGGTGTATTTGTTCTTGGACGGATGTTACGTGAAGCATGGGGATCTGAAGCAGCAAAAAAGCAAGCAGAGTTCAATGATTTCCTAGAGAGGAACCTTATGTGCATATCAATGGAGCTCGTAACTGCAGTCCTAGGAGACCATGGACAGCGTCCAAATGAAGATTTTGTTGTGGTGACAGCAGTCACAGAGCTGGGCAATGGGAAGCCAAAGTTCTACTCAACCCCTGAGGTTATTGCTTTCTGTCGGAAATGGCGCCTTCCGACAAATCATGTATGGCTGTTCTCAACAAGGAAAGCAGTGACATCGTTTTTTGCTGCCTTTGATGCCTTGTGTGAAGAAGGAACTGCAACAACTGTGTGCAGAGCTCTTGATGAAGTTGCAGATATATCTATACCAGGTTCAAAAGATCATATCAAGGAGCAGGGTGAAATCTTAGAGGGTATTGTTGCTCGTATTGTAAGCCATGAGAGCTCAAAGCATATGGTGGAAGTCTTAAAAAATTTCCCTCCTCCCCCAATGGAAGGAGCTGGTCATGATTTGGGACCTAGCCTAAGGGAGATTTGTGCTGCAAATAGGTCGGATGAAACACAGCAAATAAAAGCTCTTCTCAAGGGTGTTGGCTCCTCTTTTTGCCCTGACCATTCAGACTGGCTTGGGGGAGCTGGTGATGCCCAATCTAGAAATGCAGATAAAGCAGTGGTTTCAAAATTTTTACAATCTCACCCTGCTGATTTTTCTACCACCAAATTGCAGGAAGTGATTCGTTTGATGAGAGAAAAGCGTTTTCCTGCTGCCTTTAAATGCTACCATAACTACCACAAACAGGATTCCATGTCCAATGACAACCTTTTCTACAAAATGGTTATTCATGTCCATAGTGACTCTGCATTTCGGCGTTATCAGAAAGAGATGAGGTCGAAGCCAGGACTTTGGCCTTTATATCGAGGTTTTTTCGTTGACATTAATTTGTTCAAGGCAAGCAATGAGAGAGCTGCTGAGATTGCAAAAAACAAAAGTACTGTTGTGGACGATGATGGTGGCACTGGTATGTCCGGAAAACATGGATTGGCTGATGAAGACGCAAACTTAATGATCAAATTGAAATTTCTTACCTATAAGTTGCGTACCTTTTTGATCCGCAATGGTTTGTCAATTCTTTTTAAAGAAGGTCCGGCTGCTTATAAAGCCTATTACTTGAGGCAAATGAAAATATGGGGCACTTCAGCAGGAAAGCAGAGGGAGCTCAGCAAAATGCTTGATGAATGGGCTGTGTACATACGACGGAAATGTGGAAACAAACAGCTGTCGTCATCAGTGTACCTCAGTGAGGCTGAGCCTTTCCTTGAACAATATGCTAAACGGAGCCCACAGAATCAGGCTCTTATAGGATCTGCTGGAAACTTAGTAAGGGCTGAAGACTTCTTGGCCATAGTTGAGGGAGGAAGAGATGAAGAGGGTGATCTTGAGAAGGAGTTTGTACCATCAAGCCCCAGTGCCTCAACCGGGGACATCATTCCAAAGGCTGAGGGTCTGATTGTATTCTTTCCTGGACTACCTGGTTCTGCTAAGTCAGCACTGTGCAAGGAACTACTCAAAGCCCCTGGAGGATTTGGGGATGATAGGCCAGTTCACACTCTTATGGGTGACCTTGTTAAAGGAAGATATTGGCAGAAGGTCGCTGATGAGCGGAAGAAAAAACCGTATTCTATAATGCTTGCAGACAAGAATGCACCAAATGAAGAAGTGTGGAGACAGATTGAAGACATGTGCCACAGAACCGGGGCCAATGCAGTTCCAGTTGTTCCTGATTCTGAAGGCACTGATTCAAATCCGTTTTCTCTTGATGCATTAGCGGTTTTCATGTATCGTGTGCTTCAACGTTCTAATCATCCGGGAAACCTCGACAAGAATTCTCCAAATGCTGGCTATGTGCTGTTAATGTTCTATCACCTTTATGAGGGCAAAAGTCGTAGCGAGTTTGATGGTGAATTAGTTGAGCGTTTTGGTTCGCTTGTCAAGATACCACTGCTGAAATCTGATAGGAATCCATTACCTGATCCTGTGAAATCAACTCTTGAGGAGGGAATAAATTTATACAAGCTTCACACTAAGAAACATGGAAGGTTGGAGTCTACCAAGGGAACCTATGCAAATGAGTGGGCTAAATGGGAGAAACAGTTGCGAGATGTTTTATTTGGCAATTCAGAGTATCTTAATTCTGTTCAGGTTCCTTTTGAGTCTGCTGTTAAGGAAGTATCAGAAGAGCTAAGTAAGATTGCAAAAGGTGAGTATGAGACTCCAGAGTACAGAACTCCAGATTCTGGGAAGAGGAAGATCGGGGCCATTGTTTTTGCTGCCATTAGCCTGCCTATTACCGAAATCAAAGGTTTGCTTGATAATTTGGCTGGGACAGATAGTAAAGCCGCAGCTTTCCTCAAAGACAAGAATTTGGAGAACCAGATTAATGAGGCCCATGTTACTCTTGCACACAAGAGAAGTCACGGTGTTACTGCAGTGGCTAATTACGGCATCTTCCTACACAAACAGGTCCCTGTGGATATAACTGCACTGCTCTTCACGGATAAAATTGCTGCGTTTGAAGCATGCCCTGGCTCTGTTGAAGGTGAAAGAGTCGTCTCCAAAAACGAGTGGCCACATGTTACCTTATGGACTGCAGAGGGTGTTGCAGCTAAGGAGGCCAACATGTTACATAATTTGCATTTAGAAGGGAAGGCTACTCGTATTGCAATTGACCCACCTGCCACCATTCAGGGGCCGCTGGAGTTTTACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000278 GO:0000281 GO:0000394 GO:0000910 GO:0003006 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003824 GO:0003972 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006388 GO:0006396 GO:0006399 GO:0006725 GO:0006807 GO:0007049 GO:0007275 GO:0008033 GO:0008150 GO:0008152 GO:0008356 GO:0008380 GO:0008452 GO:0009790 GO:0009791 GO:0009793 GO:0009966 GO:0009987 GO:0010069 GO:0010070 GO:0010154 GO:0010467 GO:0010646 GO:0010928 GO:0016070 GO:0016874 GO:0016886 GO:0022402 GO:0022414 GO:0023051 GO:0032501 GO:0032502 GO:0034470 GO:0034641 GO:0034660 GO:0042245 GO:0043170 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0048316 GO:0048583 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0051301 GO:0061458 GO:0061640 GO:0065007 GO:0071704 GO:0090304 GO:0097159 GO:0140098 GO:1901360 GO:1901363 GO:1903047

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

tRNA_lig_CPD

Protein Analysis

1183

Amino Acids

130.66

Weight (kDa)

8.4

Isoelectric Point (pI)

37.49

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0003227)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G07910 AT1G07910
fragaria_vesca	FvH4_3g33360 FvH4_3g33360 FvH4_3g33360 FvH4_3g33360 FvH4_3g33360 FvH4_3g33360 FvH4_3g33360 FvH4_3g33360 FvH4_4g02320
malus_domestica	MD03G1112400.v1.1 MD11G1129800.v1.1
prunus_persica	Prupe.6G094700_v2.0.a1
pyrus_communis	pycom11g10750 pycom11g10760
rosa_chinensis	RchiOBHm_Chr4g0389641 RchiOBHm_Chr5g0060751
rosa_laevigata	RLG00000009964 RLG00000035390
rosa_multiflora	Rmu_co8520825.1_g000001 Rmu_sc0006568.1_g000004 Rmu_sc0007419.1_g000006
rosa_roxburghii	Rroxscaffold_1G00019960 Rroxscaffold_5G00335630
rosa_rugosa	Rorug03G0324600 Rorug05G0333400
rosa_samantha	Rh4AG029200 Rh4BG022400 Rh4CG031200 Rh4DG022900 Rh5AG396400 Rh5BG408600 Rh5CG433200 Rh5DG423800
rosa_wichuraiana	Rw4G002180 Rw5G037370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1941
AarI	CACCTGC	1 cut(s)	3526
AasI	GACNNNNNNGTC	1 cut(s)	230
Acc36I	ACCTGC	1 cut(s)	3526
AccB1I	GGYRCC	1 cut(s)	1011
AccB7I	CCANNNNNTGG	2 cut(s)	2681, 3080
AccBSI	CCGCTC	2 cut(s)	29, 2446
AccI	GTMKAC	2 cut(s)	392, 2891
AccIII	TCCGGA	2 cut(s)	74, 1811
AciI	CCGC	9 cut(s)	5, 11, 27, 714, 1897, 2446, 2612, 3183, 3536
AclI	AACGTT	1 cut(s)	2638
AclWI	GGATC	4 cut(s)	808, 1888, 2155, 2810
AcoI	YGGCCR	2 cut(s)	2184, 3410
AcsI	RAATTY	8 cut(s)	523, 584, 1258, 1466, 1862, 2668, 2848, 3205
AcuI	CTGAAG	6 cut(s)	45, 429, 825, 1965, 2193, 2592
AcyI	GRCGYC	1 cut(s)	1012
AflIII	ACRYGT	3 cut(s)	2523, 3415, 3462
AjnI	CCWGG	6 cut(s)	1153, 1681, 2305, 2314, 2359, 3367
Alw21I	GWGCWC	4 cut(s)	876, 1126, 1232, 2004
Alw26I	GTCTC	4 cut(s)	888, 2503, 3047, 3400
AlwI	GGATC	4 cut(s)	808, 1888, 2155, 2810
AlwNI	CAGNNNCTG	1 cut(s)	3080
Ama87I	CYCGRG	1 cut(s)	679
Aor13HI	TCCGGA	2 cut(s)	74, 1811
AoxI	GGCC	9 cut(s)	1691, 2184, 2381, 2541, 3099, 3228, 3410, 3456, 3533
ApoI	RAATTY	8 cut(s)	523, 584, 1258, 1466, 1862, 2668, 2848, 3205
AseI	ATTAAT	2 cut(s)	1722, 3222
Asp700I	GAANNNNTTC	1 cut(s)	1518
AspA2I	CCTAGG	1 cut(s)	889
AspLEI	GCGC	1 cut(s)	1014
AspS9I	GGNCC	7 cut(s)	1301, 1928, 2541, 3099, 3229, 3307, 3533
AsuC2I	CCSGG	3 cut(s)	2263, 2539, 2652
AvaI	CYCGRG	1 cut(s)	679
AvaII	GGWCC	3 cut(s)	1301, 1928, 3307
AvrII	CCTAGG	1 cut(s)	889
AxyI	CCTNAGG	2 cut(s)	984, 1310
BaeGI	GKGCMC	1 cut(s)	1979
BalI	TGGCCA	2 cut(s)	2186, 3412
BanI	GGYRCC	1 cut(s)	1011
BanII	GRGCYC	5 cut(s)	876, 1126, 1232, 2004, 2126
BarI	GAAGNNNNNNTAC	2 cut(s)	396, 428
BbsI	GAAGAC	3 cut(s)	1842, 2181, 2526
Bbv12I	GWGCWC	4 cut(s)	876, 1126, 1232, 2004
BbvCI	CCTCAGC	1 cut(s)	2283
BccI	CCATC	5 cut(s)	58, 628, 1787, 2248, 2735
BceAI	ACGGC	3 cut(s)	157, 411, 3301
BcgI	CGANNNNNNTGC	4 cut(s)	1044, 1078, 1317, 1351
BciT130I	CCWGG	6 cut(s)	1155, 1683, 2307, 2316, 2361, 3369
BclI	TGATCA	1 cut(s)	1851
BcnI	CCSGG	3 cut(s)	2263, 2539, 2652
BcoDI	GTCTC	4 cut(s)	888, 2503, 3047, 3400
BfaI	CTAG	6 cut(s)	261, 461, 842, 890, 1305, 1437
BfmI	CTRYAG	3 cut(s)	882, 3270, 3432
BfoI	RGCGCY	1 cut(s)	1015
BfuAI	ACCTGC	1 cut(s)	3526
BlnI	CCTAGG	1 cut(s)	889
BlpI	GCTNAGC	2 cut(s)	2003, 2091
BmcAI	AGTACT	1 cut(s)	1777
Bme1390I	CCNGG	9 cut(s)	1155, 1683, 2263, 2307, 2316, 2361, 2539, 2652, 3369
Bme18I	GGWCC	3 cut(s)	1301, 1928, 3307
BmeT110I	CYCGRG	1 cut(s)	679
BmgT120I	GGNCC	7 cut(s)	1301, 1928, 2541, 3099, 3229, 3307, 3533
BmrFI	CCNGG	9 cut(s)	1155, 1683, 2263, 2307, 2316, 2361, 2539, 2652, 3369
BmrI	ACTGGG	1 cut(s)	2244
BmsI	GCATC	5 cut(s)	296, 1072, 1417, 2593, 3297
BmuI	ACTGGG	1 cut(s)	2244
BoxI	GACNNNNGTC	1 cut(s)	938
BpiI	GAAGAC	3 cut(s)	1842, 2181, 2526
BpmI	CTGGAG	3 cut(s)	2382, 3042, 3057
Bpu10I	CCTNAGC	3 cut(s)	552, 2283, 3450
Bpu1102I	GCTNAGC	2 cut(s)	2003, 2091
BpuEI	CTTGAG	6 cut(s)	267, 627, 1352, 1975, 2243, 2855
BpuMI	CCSGG	3 cut(s)	2263, 2539, 2652
BsaAI	YACGTR	1 cut(s)	788
BsaBI	GATNNNNATC	2 cut(s)	2586, 2802
BsaHI	GRCGYC	1 cut(s)	1012
BsaI	GGTCTC	1 cut(s)	888
BsaJI	CCNNGG	8 cut(s)	657, 889, 898, 2262, 2359, 2538, 2895, 3367
BsaWI	WCCGGW	2 cut(s)	74, 1811
BsaXI	ACNNNNNCTCC	6 cut(s)	31, 61, 247, 277, 2921, 2951
Bse1I	ACTGG	6 cut(s)	335, 1412, 1807, 2250, 2384, 2555
Bse21I	CCTNAGG	2 cut(s)	984, 1310
Bse3DI	GCAATG	3 cut(s)	961, 1747, 1906
Bse8I	GATNNNNATC	2 cut(s)	2586, 2802
BseAI	TCCGGA	2 cut(s)	74, 1811
BseBI	CCWGG	6 cut(s)	1155, 1683, 2307, 2316, 2361, 3369
BseDI	CCNNGG	8 cut(s)	657, 889, 898, 2262, 2359, 2538, 2895, 3367
BseGI	GGATG	5 cut(s)	630, 786, 1345, 2380, 2647
BseJI	GATNNNNATC	2 cut(s)	2586, 2802
BseMI	GCAATG	3 cut(s)	961, 1747, 1906
BseMII	CTCAG	8 cut(s)	485, 566, 975, 1746, 2017, 2082, 2095, 2274
BseNI	ACTGG	6 cut(s)	335, 1412, 1807, 2250, 2384, 2555
BseRI	GAGGAG	8 cut(s)	124, 127, 130, 133, 459, 1257, 1372, 2852
BseSI	GKGCMC	1 cut(s)	1979
BseYI	CCCAGC	2 cut(s)	949, 3164
BsgI	GTGCAG	2 cut(s)	1138, 3309
BshFI	GGCC	9 cut(s)	1693, 2186, 2383, 2543, 3101, 3230, 3412, 3458, 3535
BshNI	GGYRCC	1 cut(s)	1011
BsiHKAI	GWGCWC	4 cut(s)	876, 1126, 1232, 2004
BsiHKCI	CYCGRG	1 cut(s)	679
BsiSI	CCGG	6 cut(s)	75, 1812, 1931, 2262, 2538, 2651
BslFI	GGGAC	4 cut(s)	1314, 2279, 3181, 3293
BsmAI	GTCTC	4 cut(s)	888, 2503, 3047, 3400
BsmBI	CGTCTC	1 cut(s)	3400
BsmFI	GGGAC	4 cut(s)	1314, 2279, 3181, 3293
BsmI	GAATGC	2 cut(s)	160, 2491
BsnI	GGCC	9 cut(s)	1693, 2186, 2383, 2543, 3101, 3230, 3412, 3458, 3535
Bso31I	GGTCTC	1 cut(s)	888
BsoBI	CYCGRG	1 cut(s)	679
Bsp1286I	GDGCHC	6 cut(s)	876, 1126, 1232, 1979, 2004, 2126
Bsp13I	TCCGGA	2 cut(s)	74, 1811
Bsp1407I	TGTACA	1 cut(s)	2031
Bsp143I	GATC	9 cut(s)	604, 800, 1165, 1851, 1893, 2147, 2218, 2815, 3093
Bsp1720I	GCTNAGC	2 cut(s)	2003, 2091
Bsp19I	CCATGG	1 cut(s)	898
BspACI	CCGC	9 cut(s)	5, 11, 27, 714, 1897, 2446, 2612, 3183, 3536
BspANI	GGCC	9 cut(s)	1693, 2186, 2383, 2543, 3101, 3230, 3412, 3458, 3535
BspCNI	CTCAG	8 cut(s)	484, 565, 976, 1747, 2016, 2083, 2094, 2275
BspEI	TCCGGA	2 cut(s)	74, 1811
BspHI	TCATGA	1 cut(s)	1291
BspMAI	CTGCAG	3 cut(s)	886, 3274, 3436
BspMI	ACCTGC	1 cut(s)	3526
BspPI	GGATC	4 cut(s)	808, 1888, 2155, 2810
BspQI	GCTCTTC	3 cut(s)	1368, 3015, 3338
BspT107I	GGYRCC	1 cut(s)	1011
BspTNI	GGTCTC	1 cut(s)	888
BsrBI	CCGCTC	2 cut(s)	29, 2446
BsrDI	GCAATG	3 cut(s)	961, 1747, 1906
BsrGI	TGTACA	1 cut(s)	2031
BsrI	ACTGG	6 cut(s)	335, 1412, 1807, 2250, 2384, 2555
BssECI	CCNNGG	8 cut(s)	657, 889, 898, 2262, 2359, 2538, 2895, 3367
BssMI	GATC	9 cut(s)	604, 800, 1165, 1851, 1893, 2147, 2218, 2815, 3093
BssNI	GRCGYC	1 cut(s)	1012
BssT1I	CCWWGG	4 cut(s)	657, 889, 898, 2895
Bst2UI	CCWGG	6 cut(s)	1155, 1683, 2307, 2316, 2361, 3369
Bst4CI	ACNGT	9 cut(s)	306, 382, 532, 1114, 1780, 2337, 2460, 2937, 3263
Bst6I	CTCTTC	8 cut(s)	48, 92, 1368, 2197, 2205, 3015, 3080, 3338
BstACI	GRCGYC	1 cut(s)	1012
BstAUI	TGTACA	1 cut(s)	2031
BstBAI	YACGTR	1 cut(s)	788
BstC8I	GCNNGC	7 cut(s)	182, 822, 1738, 2475, 2683, 3125, 3364
BstDSI	CCRYGG	1 cut(s)	898
BstEII	GGTNACC	1 cut(s)	2402
BstENI	CCTNNNNNAGG	2 cut(s)	2084, 2714
BstF5I	GGATG	5 cut(s)	630, 786, 1345, 2380, 2647
BstH2I	RGCGCY	1 cut(s)	1015
BstHHI	GCGC	1 cut(s)	1014
BstKTI	GATC	9 cut(s)	607, 803, 1168, 1854, 1896, 2150, 2221, 2818, 3096
BstMAI	GTCTC	4 cut(s)	888, 2503, 3047, 3400
BstMBI	GATC	9 cut(s)	604, 800, 1165, 1851, 1893, 2147, 2218, 2815, 3093
BstNI	CCWGG	6 cut(s)	1155, 1683, 2307, 2316, 2361, 3369
BstNSI	RCATGY	4 cut(s)	2527, 3366, 3419, 3466
BstPAI	GACNNNNGTC	1 cut(s)	938
BstPI	GGTNACC	1 cut(s)	2402
BstSCI	CCNGG	9 cut(s)	1153, 1681, 2261, 2305, 2314, 2359, 2537, 2650, 3367
BstSFI	CTRYAG	3 cut(s)	882, 3270, 3432
BstSLI	GKGCMC	1 cut(s)	1979
BstV2I	GAAGAC	3 cut(s)	1842, 2181, 2526
BstX2I	RGATCY	2 cut(s)	800, 2147
BstXI	CCANNNNNNTGG	1 cut(s)	1689
BstYI	RGATCY	2 cut(s)	800, 2147
Bsu36I	CCTNAGG	2 cut(s)	984, 1310
BsuRI	GGCC	9 cut(s)	1693, 2186, 2383, 2543, 3101, 3230, 3412, 3458, 3535
BtgI	CCRYGG	1 cut(s)	898
BtsCI	GGATG	5 cut(s)	630, 786, 1345, 2380, 2647
BtsI	GCAGTG	6 cut(s)	277, 1062, 1461, 2783, 3279, 3326
BveI	ACCTGC	1 cut(s)	3526
Cac8I	GCNNGC	7 cut(s)	182, 822, 1738, 2475, 2683, 3125, 3364
CaiI	CAGNNNCTG	1 cut(s)	3080
CciI	TCATGA	1 cut(s)	1291
CfoI	GCGC	1 cut(s)	1014
Cfr13I	GGNCC	7 cut(s)	1301, 1928, 2541, 3099, 3229, 3307, 3533
CseI	GACGC	2 cut(s)	896, 1847
CsiI	ACCWGGT	2 cut(s)	1153, 2314
DinI	GGCGCC	1 cut(s)	1013
DpnI	GATC	9 cut(s)	606, 802, 1167, 1853, 1895, 2149, 2220, 2817, 3095
DpnII	GATC	9 cut(s)	604, 800, 1165, 1851, 1893, 2147, 2218, 2815, 3093
DraI	TTTAAA	2 cut(s)	1558, 1921
DrdI	GACNNNNNNGTC	1 cut(s)	230
DseDI	GACNNNNNNGTC	1 cut(s)	230
EaeI	YGGCCR	2 cut(s)	2184, 3410
Eam1104I	CTCTTC	8 cut(s)	48, 92, 1368, 2197, 2205, 3015, 3080, 3338
EarI	CTCTTC	8 cut(s)	48, 92, 1368, 2197, 2205, 3015, 3080, 3338
Ecl136II	GAGCTC	4 cut(s)	874, 1124, 1230, 2002
Eco130I	CCWWGG	4 cut(s)	657, 889, 898, 2895
Eco24I	GRGCYC	5 cut(s)	876, 1126, 1232, 2004, 2126
Eco31I	GGTCTC	1 cut(s)	888
Eco47I	GGWCC	3 cut(s)	1301, 1928, 3307
Eco53kI	GAGCTC	4 cut(s)	874, 1124, 1230, 2002
Eco57I	CTGAAG	6 cut(s)	45, 429, 825, 1965, 2193, 2592
Eco81I	CCTNAGG	2 cut(s)	984, 1310
Eco88I	CYCGRG	1 cut(s)	679
Eco91I	GGTNACC	1 cut(s)	2402
EcoICRI	GAGCTC	4 cut(s)	874, 1124, 1230, 2002
EcoNI	CCTNNNNNAGG	2 cut(s)	2084, 2714
EcoO109I	RGGNCCY	2 cut(s)	1301, 3307
EcoO65I	GGTNACC	1 cut(s)	2402
EcoRI	GAATTC	1 cut(s)	2668
EcoRII	CCWGG	6 cut(s)	1153, 1681, 2305, 2314, 2359, 3367
EcoT14I	CCWWGG	4 cut(s)	657, 889, 898, 2895
EcoT22I	ATGCAT	1 cut(s)	2608
EcoT38I	GRGCYC	5 cut(s)	876, 1126, 1232, 2004, 2126
EgeI	GGCGCC	1 cut(s)	1013
EheI	GGCGCC	1 cut(s)	1013
ErhI	CCWWGG	4 cut(s)	657, 889, 898, 2895
Esp3I	CGTCTC	1 cut(s)	3400
FalI	AAGNNNNNCTT	2 cut(s)	3135, 3167
FaqI	GGGAC	4 cut(s)	1314, 2279, 3181, 3293
FauNDI	CATATG	2 cut(s)	547, 1239
FbaI	TGATCA	1 cut(s)	1851
FblI	GTMKAC	2 cut(s)	392, 2891
FokI	GGATG	5 cut(s)	637, 793, 1352, 2387, 2634
FriOI	GRGCYC	5 cut(s)	876, 1126, 1232, 2004, 2126
FspBI	CTAG	6 cut(s)	261, 461, 842, 890, 1305, 1437
GlaI	GCGC	1 cut(s)	1013
GsaI	CCCAGC	2 cut(s)	953, 3168
GsuI	CTGGAG	3 cut(s)	2382, 3042, 3057
HaeII	RGCGCY	1 cut(s)	1015
HaeIII	GGCC	9 cut(s)	1693, 2186, 2383, 2543, 3101, 3230, 3412, 3458, 3535
HapII	CCGG	6 cut(s)	75, 1812, 1931, 2262, 2538, 2651
HgaI	GACGC	2 cut(s)	896, 1847
HhaI	GCGC	1 cut(s)	1014
Hin1I	GRCGYC	1 cut(s)	1012
Hin6I	GCGC	1 cut(s)	1012
HinP1I	GCGC	1 cut(s)	1012
HincII	GTYRAC	1 cut(s)	1717
HindII	GTYRAC	1 cut(s)	1717
HindIII	AAGCTT	1 cut(s)	2858
HpaII	CCGG	6 cut(s)	75, 1812, 1931, 2262, 2538, 2651
Hpy166II	GTNNAC	8 cut(s)	393, 535, 1717, 1786, 2032, 2077, 2389, 2892
Hpy8I	GTNNAC	8 cut(s)	393, 535, 1717, 1786, 2032, 2077, 2389, 2892
Hpy99I	CGWCG	2 cut(s)	236, 2043
HpyCH4III	ACNGT	9 cut(s)	306, 382, 532, 1114, 1780, 2337, 2460, 2937, 3263
HpyCH4IV	ACGT	3 cut(s)	200, 787, 2638
HpySE526I	ACGT	3 cut(s)	200, 787, 2638
Hsp92I	GRCGYC	1 cut(s)	1012
HspAI	GCGC	1 cut(s)	1012
KasI	GGCGCC	1 cut(s)	1011
Kpn2I	TCCGGA	2 cut(s)	74, 1811
Ksp22I	TGATCA	1 cut(s)	1851
Kzo9I	GATC	9 cut(s)	604, 800, 1165, 1851, 1893, 2147, 2218, 2815, 3093
LguI	GCTCTTC	3 cut(s)	1368, 3015, 3338
LmnI	GCTCC	8 cut(s)	233, 871, 1177, 1283, 1385, 1418, 1999, 2121
LweI	GCATC	5 cut(s)	296, 1072, 1417, 2593, 3297
MabI	ACCWGGT	2 cut(s)	1153, 2314
MaeI	CTAG	6 cut(s)	261, 461, 842, 890, 1305, 1437
MaeII	ACGT	3 cut(s)	200, 787, 2638
MalI	GATC	9 cut(s)	606, 802, 1167, 1853, 1895, 2149, 2220, 2817, 3095
MbiI	CCGCTC	2 cut(s)	29, 2446
MboI	GATC	9 cut(s)	604, 800, 1165, 1851, 1893, 2147, 2218, 2815, 3093
MfeI	CAATTG	1 cut(s)	3507
MflI	RGATCY	2 cut(s)	800, 2147
MhlI	GDGCHC	6 cut(s)	876, 1126, 1232, 1979, 2004, 2126
MlsI	TGGCCA	2 cut(s)	2186, 3412
MluNI	TGGCCA	2 cut(s)	2186, 3412
Mly113I	GGCGCC	1 cut(s)	1012
MlyI	GAGTC	5 cut(s)	1634, 2897, 3005, 3049, 3399
MmeI	TCCRAC	6 cut(s)	415, 436, 983, 1043, 1317, 2865
Mox20I	TGGCCA	2 cut(s)	2186, 3412
Mph1103I	ATGCAT	1 cut(s)	2608
MroI	TCCGGA	2 cut(s)	74, 1811
MroXI	GAANNNNTTC	1 cut(s)	1518
MscI	TGGCCA	2 cut(s)	2186, 3412
MslI	CAYNNNNRTG	4 cut(s)	866, 1805, 2396, 2712
Msp20I	TGGCCA	2 cut(s)	2186, 3412
MspA1I	CMGCKG	3 cut(s)	755, 2062, 3538
MspI	CCGG	6 cut(s)	75, 1812, 1931, 2262, 2538, 2651
MspR9I	CCNGG	9 cut(s)	1155, 1683, 2263, 2307, 2316, 2361, 2539, 2652, 3369
MunI	CAATTG	1 cut(s)	3507
Mva1269I	GAATGC	2 cut(s)	160, 2491
MvaI	CCWGG	6 cut(s)	1155, 1683, 2307, 2316, 2361, 3369
NarI	GGCGCC	1 cut(s)	1012
NciI	CCSGG	3 cut(s)	2263, 2539, 2652
NcoI	CCATGG	1 cut(s)	898
NdeI	CATATG	2 cut(s)	547, 1239
NdeII	GATC	9 cut(s)	604, 800, 1165, 1851, 1893, 2147, 2218, 2815, 3093
NmuCI	GTSAC	7 cut(s)	684, 931, 940, 1057, 1637, 2402, 3257
NsiI	ATGCAT	1 cut(s)	2608
NspI	RCATGY	4 cut(s)	2527, 3366, 3419, 3466
PaeI	GCATGC	1 cut(s)	3366
PagI	TCATGA	1 cut(s)	1291
PaqCI	CACCTGC	1 cut(s)	3526
PciI	ACATGT	3 cut(s)	2523, 3415, 3462
PciSI	GCTCTTC	3 cut(s)	1368, 3015, 3338
PcsI	WCGNNNNNNNCGW	1 cut(s)	784
PctI	GAATGC	2 cut(s)	160, 2491
PdmI	GAANNNNTTC	1 cut(s)	1518
PfeI	GAWTC	8 cut(s)	19, 1519, 1586, 2131, 2567, 2582, 2803, 3077
PflFI	GACNNNGTC	1 cut(s)	906
PflMI	CCANNNNNTGG	2 cut(s)	2681, 3080
PfoI	TCCNGGA	2 cut(s)	2305, 2650
PleI	GAGTC	5 cut(s)	1634, 2896, 3004, 3049, 3398
PluTI	GGCGCC	1 cut(s)	1015
PpsI	GAGTC	5 cut(s)	1634, 2896, 3004, 3049, 3398
Ppu21I	YACGTR	1 cut(s)	788
PpuMI	RGGWCCY	2 cut(s)	1301, 3307
PscI	ACATGT	3 cut(s)	2523, 3415, 3462
PshAI	GACNNNNGTC	1 cut(s)	938
PshBI	ATTAAT	2 cut(s)	1722, 3222
PsiI	TTATAA	1 cut(s)	1941
Psp124BI	GAGCTC	4 cut(s)	876, 1126, 1232, 2004
Psp1406I	AACGTT	1 cut(s)	2638
Psp5II	RGGWCCY	2 cut(s)	1301, 3307
Psp6I	CCWGG	6 cut(s)	1153, 1681, 2305, 2314, 2359, 3367
PspEI	GGTNACC	1 cut(s)	2402
PspFI	CCCAGC	2 cut(s)	949, 3164
PspGI	CCWGG	6 cut(s)	1153, 1681, 2305, 2314, 2359, 3367
PspPI	GGNCC	7 cut(s)	1301, 1928, 2541, 3099, 3229, 3307, 3533
PspPPI	RGGWCCY	2 cut(s)	1301, 3307
PsrI	GAACNNNNNNTAC	2 cut(s)	315, 347
PstI	CTGCAG	3 cut(s)	886, 3274, 3436
PstNI	CAGNNNCTG	1 cut(s)	3080
PsuI	RGATCY	2 cut(s)	800, 2147
PsyI	GACNNNGTC	1 cut(s)	906
PvuII	CAGCTG	2 cut(s)	755, 2062
RseI	CAYNNNNRTG	4 cut(s)	866, 1805, 2396, 2712
SacI	GAGCTC	4 cut(s)	876, 1126, 1232, 2004
SapI	GCTCTTC	3 cut(s)	1368, 3015, 3338
Sau3AI	GATC	9 cut(s)	604, 800, 1165, 1851, 1893, 2147, 2218, 2815, 3093
Sau96I	GGNCC	7 cut(s)	1301, 1928, 2541, 3099, 3229, 3307, 3533
ScaI	AGTACT	1 cut(s)	1777
SchI	GAGTC	5 cut(s)	1634, 2897, 3005, 3049, 3399
ScrFI	CCNGG	9 cut(s)	1155, 1683, 2263, 2307, 2316, 2361, 2539, 2652, 3369
SduI	GDGCHC	6 cut(s)	876, 1126, 1232, 1979, 2004, 2126
SexAI	ACCWGGT	2 cut(s)	1153, 2314
SfaNI	GCATC	5 cut(s)	296, 1072, 1417, 2593, 3297
SfcI	CTRYAG	3 cut(s)	882, 3270, 3432
SfoI	GGCGCC	1 cut(s)	1013
SinI	GGWCC	3 cut(s)	1301, 1928, 3307
SmiMI	CAYNNNNRTG	4 cut(s)	866, 1805, 2396, 2712
SmlI	CTYRAG	6 cut(s)	282, 642, 1367, 1954, 2222, 2834
SmoI	CTYRAG	6 cut(s)	282, 642, 1367, 1954, 2222, 2834
SphI	GCATGC	1 cut(s)	3366
SsiI	CCGC	9 cut(s)	5, 11, 27, 714, 1897, 2446, 2612, 3183, 3536
SspDI	GGCGCC	1 cut(s)	1011
SspMI	CTAG	6 cut(s)	261, 461, 842, 890, 1305, 1437
SstI	GAGCTC	4 cut(s)	876, 1126, 1232, 2004
StyD4I	CCNGG	9 cut(s)	1153, 1681, 2261, 2305, 2314, 2359, 2537, 2650, 3367
StyI	CCWWGG	4 cut(s)	657, 889, 898, 2895
TaaI	ACNGT	9 cut(s)	306, 382, 532, 1114, 1780, 2337, 2460, 2937, 3263
TaiI	ACGT	3 cut(s)	203, 790, 2641
TaqI	TCGA	4 cut(s)	234, 1676, 1702, 2661
TatI	WGTACW	4 cut(s)	337, 1775, 2031, 3063
TauI	GCSGC	3 cut(s)	7, 3185, 3538
TfiI	GAWTC	8 cut(s)	19, 1519, 1586, 2131, 2567, 2582, 2803, 3077
TseFI	GTSAC	7 cut(s)	684, 931, 940, 1057, 1637, 2402, 3257
Tsp45I	GTSAC	7 cut(s)	684, 931, 940, 1057, 1637, 2402, 3257
TspGWI	ACGGA	7 cut(s)	80, 220, 793, 2056, 2134, 2580, 3353
Tth111I	GACNNNGTC	1 cut(s)	906
Van91I	CCANNNNNTGG	2 cut(s)	2681, 3080
VpaK11BI	GGWCC	3 cut(s)	1301, 1928, 3307
VspI	ATTAAT	2 cut(s)	1722, 3222
XagI	CCTNNNNNAGG	2 cut(s)	2084, 2714
XapI	RAATTY	8 cut(s)	523, 584, 1258, 1466, 1862, 2668, 2848, 3205
XbaI	TCTAGA	1 cut(s)	1436
XceI	RCATGY	4 cut(s)	2527, 3366, 3419, 3466
XcmI	CCANNNNNNNNNTGG	1 cut(s)	188
XmaJI	CCTAGG	1 cut(s)	889
XmiI	GTMKAC	2 cut(s)	392, 2891
XmnI	GAANNNNTTC	1 cut(s)	1518
XspI	CTAG	6 cut(s)	261, 461, 842, 890, 1305, 1437
ZrmI	AGTACT	1 cut(s)	1777
Zsp2I	ATGCAT	1 cut(s)	2608

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.