Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0011927

Physical Location & Seq

Genomic Coordinates Forward (+)

17630426 .. 17632338

Gene Structure 1913 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G43860.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 957 bp

ATGTCCTCTTCTTCATCAAGAAACGCCTTTGAAGATGGCAAATACAAATCAAATCTCTTAACCTTGGACTCATCATCTCGTTGCTGCAAAATAACACCGTCTTCTAGAGCTTCACCGTCTCCGCCAAAGCAGCTGTTGGTGGCTACGCCGGTGGAGGAAGGAGATTATCCGGTGGTGATGCTCCTCCATGGTTACCTTCTCTACAACTCCTTCTATTCTCAGCTTATGTTGCATGTCTCTTCTCATGGCTTCATCCTCATCGCTCCTCAGTTATATAGTATCGCCGGACCAGACACAATGGATGAGATTAAATCAACGGCGGAGATTATGGATTGGTTATCAGTAGGACTTAATCACTTTCTTCCAGCGCAAGTAACACCAAACCTATCCAAATTTGCCCTCTCCGGCCATAGCCGCGGTGGCAAAACCGCGTTTGCGGTCGCCTTAAAGAAATTTGGGTACTCCTCGAATCTAAAGATCTCGACATTGATCGGTATAGATCCAGTCGATGGAACAGGGAAAGGGAAACAAACCCCTCCTCCGGTGTTGGCTTACCTTCCAAACTCATTTGACCTAGACAAAACGCCTATACTTGTGATCGGTTCGGGGCTTGGTGAAACCGCTCGGAACCCATTATTCCCACCGTGTGCACCTCCCGGAGTGAATCACCGAGAGTTCTTTCGGGAATGTCAAGGTCCAGCATGGCATTTCGTTGCGAAGGATTATGGGCATTTGGACATGCTTGATGATGATACAAAAGGGATTAGAGGGAAGAGTTCTTATTGTTTGTGTAAGAATGGTGAAGAGAGGAGACCAATGAGGAGATTCGTTGGTGGACTTGTTGTATCATTTTTGAAGGCTTATTTGGAAGGAGATGATCGTGAATTAGTTAAGATCAAAGATGGGTGTCACGAGGATGTTCCCGTTGAAATTCAAGAGTTTGAGGTTATCATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006725 GO:0006778 GO:0006787 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009507 GO:0009536 GO:0009987 GO:0015994 GO:0015996 GO:0016787 GO:0016788 GO:0019439 GO:0033013 GO:0033015 GO:0034641 GO:0042440 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044248 GO:0044270 GO:0044424 GO:0044444 GO:0044464 GO:0046149 GO:0046483 GO:0046700 GO:0047746 GO:0051186 GO:0051187 GO:0052689 GO:0071704 GO:1901360 GO:1901361 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00860 ko01100 ko01110 map00860 map01100 map01110

Pfam Domains

Protein Families

Chlorophyllase Chlorophyllase2

Protein Analysis

318

Amino Acids

34.9

Weight (kDa)

6.51

Isoelectric Point (pI)

43.63

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Chlorophyllase	PF07224	7 - 316	2.9e-130	Chlorophyllase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011927)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G43860
fragaria_vesca	FvH4_4g00030 FvH4_4g01061 FvH4_4g01061
malus_domestica	MD13G1198800.v1.1 MD16G1199000.v1.1
prunus_persica	Prupe.1G020600_v2.0.a1
pyrus_communis	pycom13g17260 pycom16g16760
rosa_laevigata	RLG00000010105
rosa_multiflora	Rmu_sc0003953.1_g000005 Rmu_sc0012183.1_g000004
rosa_roxburghii	Rroxscaffold_5G00334310
rosa_rugosa	Rorug03G0311700
rosa_samantha	Rh4AG017300 Rh4BG012100 Rh4CG018500 Rh4DG013100
rosa_wichuraiana	Rw4G001110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	509
AccBSI	CCGCTC	1 cut(s)	623
AccII	CGCG	2 cut(s)	417, 431
AciI	CCGC	7 cut(s)	122, 320, 415, 417, 429, 437, 621
AclWI	GGATC	1 cut(s)	494
AcoI	YGGCCR	1 cut(s)	406
AcsI	RAATTY	3 cut(s)	392, 452, 930
AdeI	CACNNNGTG	1 cut(s)	647
AfaI	GTAC	1 cut(s)	461
AfiI	CCNNNNNNNGG	2 cut(s)	509, 541
AgsI	TTSAA	4 cut(s)	32, 856, 929, 935
AjuI	GAANNNNNNNTTGG	2 cut(s)	848, 880
AluBI	AGCT	3 cut(s)	110, 133, 223
AluI	AGCT	3 cut(s)	110, 133, 223
Alw21I	GWGCWC	1 cut(s)	652
Alw26I	GTCTC	3 cut(s)	123, 241, 805
Alw44I	GTGCAC	1 cut(s)	648
AlwI	GGATC	1 cut(s)	494
AoxI	GGCC	1 cut(s)	406
ApaLI	GTGCAC	1 cut(s)	648
ApeKI	GCWGC	2 cut(s)	84, 130
ApoI	RAATTY	3 cut(s)	392, 452, 930
AspLEI	GCGC	1 cut(s)	370
AspS9I	GGNCC	2 cut(s)	287, 695
AsuC2I	CCSGG	1 cut(s)	657
AsuHPI	GGTGA	5 cut(s)	105, 187, 626, 659, 812
AvaII	GGWCC	2 cut(s)	287, 695
BaeGI	GKGCMC	1 cut(s)	652
BauI	CACGAG	1 cut(s)	911
BbsI	GAAGAC	1 cut(s)	93
Bbv12I	GWGCWC	1 cut(s)	652
BbvI	GCAGC	2 cut(s)	71, 142
BccI	CCATC	3 cut(s)	29, 503, 896
BceAI	ACGGC	1 cut(s)	333
BcnI	CCSGG	1 cut(s)	657
BcoDI	GTCTC	3 cut(s)	123, 241, 805
BfaI	CTAG	2 cut(s)	105, 575
BglI	GCCNNNNNGGC	1 cut(s)	420
BglII	AGATCT	1 cut(s)	477
BisI	GCNGC	3 cut(s)	85, 131, 415
BlsI	GCNGC	3 cut(s)	86, 132, 416
Bme1390I	CCNGG	1 cut(s)	657
Bme18I	GGWCC	2 cut(s)	287, 695
BmgT120I	GGNCC	2 cut(s)	287, 695
BmiI	GGNNCC	1 cut(s)	629
BmrFI	CCNGG	1 cut(s)	657
BmsI	GCATC	1 cut(s)	168
BpiI	GAAGAC	1 cut(s)	93
BpuMI	CCSGG	1 cut(s)	657
BsaI	GGTCTC	1 cut(s)	805
BsaJI	CCNNGG	3 cut(s)	63, 187, 415
BsaWI	WCCGGW	2 cut(s)	169, 541
BsaXI	ACNNNNNCTCC	2 cut(s)	523, 553
Bsc4I	CCNNNNNNNGG	2 cut(s)	509, 541
Bse118I	RCCGGY	1 cut(s)	148
Bse1I	ACTGG	1 cut(s)	503
BseDI	CCNNGG	3 cut(s)	63, 187, 415
BseGI	GGATG	3 cut(s)	252, 307, 922
BseLI	CCNNNNNNNGG	2 cut(s)	509, 541
BseMII	CTCAG	2 cut(s)	233, 281
BseNI	ACTGG	1 cut(s)	503
BseRI	GAGGAG	6 cut(s)	173, 255, 454, 528, 823, 835
BseSI	GKGCMC	1 cut(s)	652
BseXI	GCAGC	2 cut(s)	71, 142
Bsh1236I	CGCG	2 cut(s)	417, 431
Bsh1285I	CGRYCG	1 cut(s)	441
BshFI	GGCC	1 cut(s)	408
BsiEI	CGRYCG	1 cut(s)	441
BsiHKAI	GWGCWC	1 cut(s)	652
BsiSI	CCGG	6 cut(s)	149, 170, 285, 405, 542, 657
BslI	CCNNNNNNNGG	2 cut(s)	509, 541
BsmAI	GTCTC	3 cut(s)	123, 241, 805
BsmBI	CGTCTC	1 cut(s)	123
BsnI	GGCC	1 cut(s)	408
Bso31I	GGTCTC	1 cut(s)	805
Bsp1286I	GDGCHC	1 cut(s)	652
Bsp143I	GATC	6 cut(s)	477, 489, 499, 597, 877, 894
Bsp19I	CCATGG	1 cut(s)	187
BspACI	CCGC	7 cut(s)	122, 320, 415, 417, 429, 437, 621
BspANI	GGCC	1 cut(s)	408
BspCNI	CTCAG	2 cut(s)	232, 280
BspFNI	CGCG	2 cut(s)	417, 431
BspLI	GGNNCC	1 cut(s)	629
BspPI	GGATC	1 cut(s)	494
BspTNI	GGTCTC	1 cut(s)	805
BsrBI	CCGCTC	1 cut(s)	623
BsrFI	RCCGGY	1 cut(s)	148
BsrI	ACTGG	1 cut(s)	503
BssAI	RCCGGY	1 cut(s)	148
BssECI	CCNNGG	3 cut(s)	63, 187, 415
BssMI	GATC	6 cut(s)	477, 489, 499, 597, 877, 894
BssSI	CACGAG	1 cut(s)	911
BssT1I	CCWWGG	2 cut(s)	63, 187
Bst2BI	CACGAG	1 cut(s)	911
Bst4CI	ACNGT	3 cut(s)	99, 117, 645
Bst6I	CTCTTC	4 cut(s)	13, 244, 767, 798
BstDEI	CTNAG	2 cut(s)	219, 267
BstDSI	CCRYGG	2 cut(s)	187, 415
BstEII	GGTNACC	1 cut(s)	191
BstF5I	GGATG	3 cut(s)	252, 307, 922
BstFNI	CGCG	2 cut(s)	417, 431
BstHHI	GCGC	1 cut(s)	370
BstKTI	GATC	6 cut(s)	480, 492, 502, 600, 880, 897
BstMAI	GTCTC	3 cut(s)	123, 241, 805
BstMBI	GATC	6 cut(s)	477, 489, 499, 597, 877, 894
BstMCI	CGRYCG	1 cut(s)	441
BstMWI	GCNNNNNNNGC	4 cut(s)	130, 229, 414, 420
BstNSI	RCATGY	2 cut(s)	236, 742
BstPI	GGTNACC	1 cut(s)	191
BstSCI	CCNGG	1 cut(s)	655
BstSLI	GKGCMC	1 cut(s)	652
BstUI	CGCG	2 cut(s)	417, 431
BstV1I	GCAGC	2 cut(s)	71, 142
BstV2I	GAAGAC	1 cut(s)	93
BstX2I	RGATCY	2 cut(s)	477, 499
BstYI	RGATCY	2 cut(s)	477, 499
BsuRI	GGCC	1 cut(s)	408
BtgI	CCRYGG	2 cut(s)	187, 415
BtgZI	GCGATG	1 cut(s)	244
BtsCI	GGATG	3 cut(s)	252, 307, 922
CfoI	GCGC	1 cut(s)	370
Cfr10I	RCCGGY	1 cut(s)	148
Cfr13I	GGNCC	2 cut(s)	287, 695
Cfr42I	CCGCGG	1 cut(s)	418
Csp6I	GTAC	1 cut(s)	460
CviAII	CATG	6 cut(s)	188, 233, 245, 702, 739, 952
CviQI	GTAC	1 cut(s)	460
DdeI	CTNAG	2 cut(s)	219, 267
DpnI	GATC	6 cut(s)	479, 491, 501, 599, 879, 896
DpnII	GATC	6 cut(s)	477, 489, 499, 597, 877, 894
DraIII	CACNNNGTG	1 cut(s)	647
EaeI	YGGCCR	1 cut(s)	406
Eam1104I	CTCTTC	4 cut(s)	13, 244, 767, 798
EarI	CTCTTC	4 cut(s)	13, 244, 767, 798
EciI	GGCGGA	2 cut(s)	111, 335
Eco130I	CCWWGG	2 cut(s)	63, 187
Eco31I	GGTCTC	1 cut(s)	805
Eco47I	GGWCC	2 cut(s)	287, 695
Eco91I	GGTNACC	1 cut(s)	191
EcoO65I	GGTNACC	1 cut(s)	191
EcoT14I	CCWWGG	2 cut(s)	63, 187
ErhI	CCWWGG	2 cut(s)	63, 187
Esp3I	CGTCTC	1 cut(s)	123
FaeI	CATG	6 cut(s)	191, 236, 248, 705, 742, 955
FatI	CATG	6 cut(s)	187, 232, 244, 701, 738, 951
Fnu4HI	GCNGC	3 cut(s)	85, 131, 415
FokI	GGATG	3 cut(s)	239, 314, 929
Fsp4HI	GCNGC	3 cut(s)	85, 131, 415
FspBI	CTAG	2 cut(s)	105, 575
GlaI	GCGC	1 cut(s)	369
GluI	GCNGC	3 cut(s)	85, 131, 415
HaeIII	GGCC	1 cut(s)	408
HapII	CCGG	6 cut(s)	149, 170, 285, 405, 542, 657
HhaI	GCGC	1 cut(s)	370
Hin1II	CATG	6 cut(s)	191, 236, 248, 705, 742, 955
Hin6I	GCGC	1 cut(s)	368
HinP1I	GCGC	1 cut(s)	368
HinfI	GANTC	4 cut(s)	68, 469, 664, 825
HpaII	CCGG	6 cut(s)	149, 170, 285, 405, 542, 657
HphI	GGTGA	5 cut(s)	105, 187, 626, 659, 812
Hpy166II	GTNNAC	2 cut(s)	650, 836
Hpy188I	TCNGA	1 cut(s)	627
Hpy188III	TCNNGA	7 cut(s)	18, 105, 481, 683, 881, 911, 935
Hpy8I	GTNNAC	2 cut(s)	650, 836
HpyAV	CCTTC	7 cut(s)	152, 206, 220, 566, 712, 850, 863
HpyCH4III	ACNGT	3 cut(s)	99, 117, 645
HpyCH4V	TGCA	3 cut(s)	87, 232, 650
HpyF10VI	GCNNNNNNNGC	4 cut(s)	130, 229, 414, 420
HpyF3I	CTNAG	2 cut(s)	219, 267
Hsp92II	CATG	6 cut(s)	191, 236, 248, 705, 742, 955
HspAI	GCGC	1 cut(s)	368
KspI	CCGCGG	1 cut(s)	418
Kzo9I	GATC	6 cut(s)	477, 489, 499, 597, 877, 894
LmnI	GCTCC	2 cut(s)	186, 268
Lsp1109I	GCAGC	2 cut(s)	71, 142
LweI	GCATC	1 cut(s)	168
MaeI	CTAG	2 cut(s)	105, 575
MaeIII	GTNAC	3 cut(s)	191, 373, 908
MalI	GATC	6 cut(s)	479, 491, 501, 599, 879, 896
MbiI	CCGCTC	1 cut(s)	623
MboI	GATC	6 cut(s)	477, 489, 499, 597, 877, 894
MboII	GAAGA	7 cut(s)	3, 44, 93, 231, 353, 784, 815
MflI	RGATCY	2 cut(s)	477, 499
MhlI	GDGCHC	1 cut(s)	652
MluCI	AATT	4 cut(s)	392, 452, 884, 930
MlyI	GAGTC	1 cut(s)	62
MseI	TTAA	5 cut(s)	59, 309, 351, 446, 891
MslI	CAYNNNNRTG	1 cut(s)	915
MspA1I	CMGCKG	2 cut(s)	133, 417
MspI	CCGG	6 cut(s)	149, 170, 285, 405, 542, 657
MspR9I	CCNGG	1 cut(s)	657
MvnI	CGCG	2 cut(s)	417, 431
MwoI	GCNNNNNNNGC	4 cut(s)	130, 229, 414, 420
NciI	CCSGG	1 cut(s)	657
NcoI	CCATGG	1 cut(s)	187
NdeII	GATC	6 cut(s)	477, 489, 499, 597, 877, 894
NlaIII	CATG	6 cut(s)	191, 236, 248, 705, 742, 955
NlaIV	GGNNCC	1 cut(s)	629
NmuCI	GTSAC	1 cut(s)	908
NspI	RCATGY	2 cut(s)	236, 742
PfeI	GAWTC	3 cut(s)	469, 664, 825
PflMI	CCANNNNNTGG	1 cut(s)	509
PfoI	TCCNGGA	1 cut(s)	655
PkrI	GCNGC	3 cut(s)	86, 132, 416
PleI	GAGTC	1 cut(s)	62
PpsI	GAGTC	1 cut(s)	62
PspEI	GGTNACC	1 cut(s)	191
PspN4I	GGNNCC	1 cut(s)	629
PspPI	GGNCC	2 cut(s)	287, 695
PsuI	RGATCY	2 cut(s)	477, 499
PvuII	CAGCTG	1 cut(s)	133
RsaI	GTAC	1 cut(s)	461
RsaNI	GTAC	1 cut(s)	460
RseI	CAYNNNNRTG	1 cut(s)	915
SacII	CCGCGG	1 cut(s)	418
SaqAI	TTAA	5 cut(s)	59, 309, 351, 446, 891
SatI	GCNGC	3 cut(s)	85, 131, 415
Sau3AI	GATC	6 cut(s)	477, 489, 499, 597, 877, 894
Sau96I	GGNCC	2 cut(s)	287, 695
SchI	GAGTC	1 cut(s)	62
ScrFI	CCNGG	1 cut(s)	657
SduI	GDGCHC	1 cut(s)	652
SfaNI	GCATC	1 cut(s)	168
Sfr303I	CCGCGG	1 cut(s)	418
SgrAI	CRCCGGYG	1 cut(s)	148
SgrBI	CCGCGG	1 cut(s)	418
SinI	GGWCC	2 cut(s)	287, 695
SmiMI	CAYNNNNRTG	1 cut(s)	915
Sse9I	AATT	4 cut(s)	392, 452, 884, 930
SsiI	CCGC	7 cut(s)	122, 320, 415, 417, 429, 437, 621
SspMI	CTAG	2 cut(s)	105, 575
StyD4I	CCNGG	1 cut(s)	655
StyI	CCWWGG	2 cut(s)	63, 187
TaaI	ACNGT	3 cut(s)	99, 117, 645
TaqI	TCGA	3 cut(s)	467, 482, 507
TasI	AATT	4 cut(s)	392, 452, 884, 930
TauI	GCSGC	1 cut(s)	417
TfiI	GAWTC	3 cut(s)	469, 664, 825
Tru1I	TTAA	5 cut(s)	59, 309, 351, 446, 891
Tru9I	TTAA	5 cut(s)	59, 309, 351, 446, 891
TseFI	GTSAC	1 cut(s)	908
TseI	GCWGC	2 cut(s)	84, 130
Tsp45I	GTSAC	1 cut(s)	908
TspDTI	ATGAA	1 cut(s)	241
Van91I	CCANNNNNTGG	1 cut(s)	509
VneI	GTGCAC	1 cut(s)	648
VpaK11BI	GGWCC	2 cut(s)	287, 695
XapI	RAATTY	3 cut(s)	392, 452, 930
XbaI	TCTAGA	1 cut(s)	104
XceI	RCATGY	2 cut(s)	236, 742
XcmI	CCANNNNNNNNNTGG	1 cut(s)	416
XspI	CTAG	2 cut(s)	105, 575

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.