Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0011927

Physical Location & Seq

Genomic Coordinates Forward (+)

1630706 .. 1632565

Gene Structure 1860 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00334310.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 927 bp

ATGTCTACTTCATCTTGTTCAAACGTTTTTGAGCTTGGAAAGTACAGGGTAGAGCTCCAAACAGTTGAGGCAGCAGAGTCTAGTGGTTGCTGCAGCACCAAGTCTTCTTCAAGTGTTTCGGTTCCGCCTCCGAAACCGCTTTTGATTGGCTTGCCTTGTGAAGCTGGAGAGTTCCCAGTGCTGCTTCTCCTCCATGGTTTCCTTCTCTCCAACTCTTTCTACTCTCAGCTTATCCAACACTTGTATACAATAGCTGGATCAGATACAAGTGATGAGATCAAGTCCACAGCTGCAATAACAAACTGGTTATCAGAAGGACTTCAATCCTTGCTTCCACCCCATGTTCAAGCAAATCTAAACAAGCTAGCACTCGCCGGCCACAGCCGCGGAGGCAAAGTTTCTTTTGCTCTAGCATTAGGGAAAGAAGGCATCACTACTAGCTTGAAATTTTCAGCCTTAATAGGCATAGACCCAGTTGATGGAATGGACACAGGGAAACAGACCCCTCCACCAGTACTAACCTATGTCCCTCATTCTTTCGATCTCGATGACATGGCAGTGATGGTGATTGGTACTGGTTTGGGTGAAGTGAAGAGAAACCCTCTATTCCCTGCCTGTGCTCCAAAGGGTGTTAACCATGAGGAGTTCTTCAAAGAGTGTCGAAAACCGGCTTGTTACTTTGTGGCCAAGGATTATGGGCATCTTGATATGCTTGATGATGAGACAAAGGGGATTAGAGGGAAGGCTACATATTGTTTGTGCAAAAATGGCAAGTCTAGGGAACCCATGAGAAAATTTGTTGGAGGAGTTGTGGTTGCTTTCGTTAAAGCCTATTTGGGAGGGGATATGAGTGAACTAATGGTTATAAGAGAAGGAGGGCATGAGGCTGCACCAATTGAGCTTCAAACTGTTGAATTCTTTTTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006725 GO:0006778 GO:0006787 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009507 GO:0009536 GO:0009987 GO:0015994 GO:0015996 GO:0016787 GO:0016788 GO:0019439 GO:0033013 GO:0033015 GO:0034641 GO:0042440 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044248 GO:0044270 GO:0044424 GO:0044444 GO:0044464 GO:0046149 GO:0046483 GO:0046700 GO:0047746 GO:0051186 GO:0051187 GO:0052689 GO:0071704 GO:1901360 GO:1901361 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00860 ko01100 ko01110 map00860 map01100 map01110

Pfam Domains

Protein Families

Chlorophyllase Chlorophyllase2

Protein Analysis

308

Amino Acids

33.12

Weight (kDa)

5.92

Isoelectric Point (pI)

39.63

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Chlorophyllase	PF07224	6 - 306	5.6e-120	Chlorophyllase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011927)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G43860
fragaria_vesca	FvH4_4g00030 FvH4_4g01061 FvH4_4g01061
malus_domestica	MD13G1198800.v1.1 MD16G1199000.v1.1
prunus_persica	Prupe.1G020600_v2.0.a1
pyrus_communis	pycom13g17260 pycom16g16760
rosa_laevigata	RLG00000010105
rosa_multiflora	Rmu_sc0003953.1_g000005 Rmu_sc0012183.1_g000004
rosa_roxburghii	Rroxscaffold_5G00334310
rosa_rugosa	Rorug03G0311700
rosa_samantha	Rh4AG017300 Rh4BG012100 Rh4CG018500 Rh4DG013100
rosa_wichuraiana	Rw4G001110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	866
AccB7I	CCANNNNNTGG	1 cut(s)	479
AccI	GTMKAC	2 cut(s)	5, 245
AccII	CGCG	1 cut(s)	387
AciI	CCGC	4 cut(s)	125, 137, 385, 387
AclI	AACGTT	1 cut(s)	24
AclWI	GGATC	1 cut(s)	265
AcoI	YGGCCR	2 cut(s)	376, 684
AcsI	RAATTY	3 cut(s)	446, 794, 914
AfaI	GTAC	3 cut(s)	44, 516, 574
AfiI	CCNNNNNNNGG	1 cut(s)	479
AgsI	TTSAA	8 cut(s)	21, 111, 323, 347, 445, 652, 905, 914
AluBI	AGCT	9 cut(s)	34, 55, 164, 229, 254, 290, 364, 441, 901
AluI	AGCT	9 cut(s)	34, 55, 164, 229, 254, 290, 364, 441, 901
Alw21I	GWGCWC	2 cut(s)	57, 622
Alw26I	GTCTC	1 cut(s)	716
AlwI	GGATC	1 cut(s)	265
AoxI	GGCC	2 cut(s)	376, 684
ApeKI	GCWGC	6 cut(s)	71, 90, 93, 181, 290, 887
ApoI	RAATTY	3 cut(s)	446, 794, 914
Asp700I	GAANNNNTTC	1 cut(s)	318
AsuHPI	GGTGA	2 cut(s)	577, 596
AsuNHI	GCTAGC	1 cut(s)	364
BalI	TGGCCA	1 cut(s)	686
BanII	GRGCYC	1 cut(s)	57
BbsI	GAAGAC	1 cut(s)	96
Bbv12I	GWGCWC	2 cut(s)	57, 622
BbvI	GCAGC	6 cut(s)	77, 83, 105, 168, 277, 874
BccI	CCATC	2 cut(s)	473, 556
BcoDI	GTCTC	1 cut(s)	716
BfaI	CTAG	5 cut(s)	81, 365, 410, 438, 777
BfmI	CTRYAG	1 cut(s)	91
BglI	GCCNNNNNGGC	1 cut(s)	390
BisI	GCNGC	7 cut(s)	72, 91, 94, 182, 291, 385, 888
BlsI	GCNGC	7 cut(s)	73, 92, 95, 183, 292, 386, 889
BmcAI	AGTACT	1 cut(s)	516
BmiI	GGNNCC	2 cut(s)	123, 783
BmrI	ACTGGG	2 cut(s)	170, 467
BmsI	GCATC	2 cut(s)	438, 709
BmtI	GCTAGC	1 cut(s)	368
BmuI	ACTGGG	2 cut(s)	170, 467
BpiI	GAAGAC	1 cut(s)	96
BplI	GAGNNNNNCTC	2 cut(s)	586, 618
BpmI	CTGGAG	1 cut(s)	186
BsaJI	CCNNGG	3 cut(s)	193, 385, 687
BsaXI	ACNNNNNCTCC	6 cut(s)	381, 411, 795, 798, 825, 828
Bsc4I	CCNNNNNNNGG	1 cut(s)	479
Bse118I	RCCGGY	2 cut(s)	374, 667
Bse1I	ACTGG	5 cut(s)	176, 308, 473, 512, 580
BseDI	CCNNGG	3 cut(s)	193, 385, 687
BseLI	CCNNNNNNNGG	1 cut(s)	479
BseMII	CTCAG	1 cut(s)	239
BseNI	ACTGG	5 cut(s)	176, 308, 473, 512, 580
BseRI	GAGGAG	3 cut(s)	179, 656, 819
BseXI	GCAGC	6 cut(s)	77, 83, 105, 168, 277, 874
BsgI	GTGCAG	1 cut(s)	873
Bsh1236I	CGCG	1 cut(s)	387
BshFI	GGCC	2 cut(s)	378, 686
BsiHKAI	GWGCWC	2 cut(s)	57, 622
BsiSI	CCGG	2 cut(s)	375, 668
BslFI	GGGAC	1 cut(s)	512
BslI	CCNNNNNNNGG	1 cut(s)	479
BsmAI	GTCTC	1 cut(s)	716
BsmFI	GGGAC	1 cut(s)	512
BsnI	GGCC	2 cut(s)	378, 686
Bsp1286I	GDGCHC	2 cut(s)	57, 622
Bsp143I	GATC	3 cut(s)	257, 276, 541
Bsp19I	CCATGG	1 cut(s)	193
BspACI	CCGC	4 cut(s)	125, 137, 385, 387
BspANI	GGCC	2 cut(s)	378, 686
BspCNI	CTCAG	1 cut(s)	238
BspFNI	CGCG	1 cut(s)	387
BspLI	GGNNCC	2 cut(s)	123, 783
BspMAI	CTGCAG	1 cut(s)	95
BspOI	GCTAGC	1 cut(s)	368
BspPI	GGATC	1 cut(s)	265
BsrFI	RCCGGY	2 cut(s)	374, 667
BsrI	ACTGG	5 cut(s)	176, 308, 473, 512, 580
BssAI	RCCGGY	2 cut(s)	374, 667
BssECI	CCNNGG	3 cut(s)	193, 385, 687
BssMI	GATC	3 cut(s)	257, 276, 541
BssNAI	GTATAC	1 cut(s)	246
BssT1I	CCWWGG	2 cut(s)	193, 687
Bst1107I	GTATAC	1 cut(s)	246
Bst4CI	ACNGT	2 cut(s)	64, 910
Bst6I	CTCTTC	1 cut(s)	587
BstC8I	GCNNGC	3 cut(s)	152, 366, 376
BstDEI	CTNAG	1 cut(s)	225
BstDSI	CCRYGG	2 cut(s)	193, 385
BstFNI	CGCG	1 cut(s)	387
BstKTI	GATC	3 cut(s)	260, 279, 544
BstMAI	GTCTC	1 cut(s)	716
BstMBI	GATC	3 cut(s)	257, 276, 541
BstMWI	GCNNNNNNNGC	3 cut(s)	384, 390, 768
BstSFI	CTRYAG	1 cut(s)	91
BstUI	CGCG	1 cut(s)	387
BstV1I	GCAGC	6 cut(s)	77, 83, 105, 168, 277, 874
BstV2I	GAAGAC	1 cut(s)	96
BstZ17I	GTATAC	1 cut(s)	246
BsuRI	GGCC	2 cut(s)	378, 686
BtgI	CCRYGG	2 cut(s)	193, 385
BtsI	GCAGTG	1 cut(s)	564
BtsIMutI	CAGTG	2 cut(s)	183, 564
Cac8I	GCNNGC	3 cut(s)	152, 366, 376
Cfr10I	RCCGGY	2 cut(s)	374, 667
Cfr42I	CCGCGG	1 cut(s)	388
Csp6I	GTAC	3 cut(s)	43, 515, 573
CviAII	CATG	6 cut(s)	194, 341, 553, 638, 787, 881
CviQI	GTAC	3 cut(s)	43, 515, 573
DdeI	CTNAG	1 cut(s)	225
DpnI	GATC	3 cut(s)	259, 278, 543
DpnII	GATC	3 cut(s)	257, 276, 541
EaeI	YGGCCR	2 cut(s)	376, 684
Eam1104I	CTCTTC	1 cut(s)	587
EarI	CTCTTC	1 cut(s)	587
EciI	GGCGGA	1 cut(s)	114
Ecl136II	GAGCTC	1 cut(s)	55
Eco130I	CCWWGG	2 cut(s)	193, 687
Eco24I	GRGCYC	1 cut(s)	57
Eco53kI	GAGCTC	1 cut(s)	55
EcoICRI	GAGCTC	1 cut(s)	55
EcoRI	GAATTC	1 cut(s)	914
EcoT14I	CCWWGG	2 cut(s)	193, 687
EcoT38I	GRGCYC	1 cut(s)	57
ErhI	CCWWGG	2 cut(s)	193, 687
FaeI	CATG	6 cut(s)	197, 344, 556, 641, 790, 884
FaqI	GGGAC	1 cut(s)	512
FatI	CATG	6 cut(s)	193, 340, 552, 637, 786, 880
FblI	GTMKAC	2 cut(s)	5, 245
Fnu4HI	GCNGC	7 cut(s)	72, 91, 94, 182, 291, 385, 888
FriOI	GRGCYC	1 cut(s)	57
Fsp4HI	GCNGC	7 cut(s)	72, 91, 94, 182, 291, 385, 888
FspBI	CTAG	5 cut(s)	81, 365, 410, 438, 777
GluI	GCNGC	7 cut(s)	72, 91, 94, 182, 291, 385, 888
GsuI	CTGGAG	1 cut(s)	186
HaeIII	GGCC	2 cut(s)	378, 686
HapII	CCGG	2 cut(s)	375, 668
Hin1II	CATG	6 cut(s)	197, 344, 556, 641, 790, 884
HincII	GTYRAC	1 cut(s)	634
HindII	GTYRAC	1 cut(s)	634
HinfI	GANTC	1 cut(s)	77
HpaI	GTTAAC	1 cut(s)	634
HpaII	CCGG	2 cut(s)	375, 668
HphI	GGTGA	2 cut(s)	577, 596
Hpy166II	GTNNAC	5 cut(s)	6, 246, 285, 634, 854
Hpy188I	TCNGA	3 cut(s)	132, 262, 313
Hpy188III	TCNNGA	2 cut(s)	545, 704
Hpy8I	GTNNAC	5 cut(s)	6, 246, 285, 634, 854
HpyAV	CCTTC	5 cut(s)	212, 308, 419, 736, 866
HpyCH4III	ACNGT	2 cut(s)	64, 910
HpyCH4IV	ACGT	1 cut(s)	24
HpyCH4V	TGCA	4 cut(s)	93, 293, 762, 890
HpyF10VI	GCNNNNNNNGC	3 cut(s)	384, 390, 768
HpyF3I	CTNAG	1 cut(s)	225
HpySE526I	ACGT	1 cut(s)	24
Hsp92II	CATG	6 cut(s)	197, 344, 556, 641, 790, 884
KroI	GCCGGC	1 cut(s)	374
KroNI	GCCGGC	1 cut(s)	376
KspAI	GTTAAC	1 cut(s)	634
KspI	CCGCGG	1 cut(s)	388
Kzo9I	GATC	3 cut(s)	257, 276, 541
LmnI	GCTCC	2 cut(s)	60, 625
Lsp1109I	GCAGC	6 cut(s)	77, 83, 105, 168, 277, 874
LweI	GCATC	2 cut(s)	438, 709
MaeI	CTAG	5 cut(s)	81, 365, 410, 438, 777
MaeII	ACGT	1 cut(s)	24
MaeIII	GTNAC	1 cut(s)	674
MalI	GATC	3 cut(s)	259, 278, 543
MboI	GATC	3 cut(s)	257, 276, 541
MboII	GAAGA	4 cut(s)	96, 99, 604, 640
MfeI	CAATTG	1 cut(s)	894
MhlI	GDGCHC	2 cut(s)	57, 622
MlsI	TGGCCA	1 cut(s)	686
MluCI	AATT	4 cut(s)	446, 794, 894, 914
MluNI	TGGCCA	1 cut(s)	686
MlyI	GAGTC	1 cut(s)	86
MmeI	TCCRAC	3 cut(s)	234, 259, 781
Mox20I	TGGCCA	1 cut(s)	686
MroNI	GCCGGC	1 cut(s)	374
MroXI	GAANNNNTTC	1 cut(s)	318
MscI	TGGCCA	1 cut(s)	686
MseI	TTAA	3 cut(s)	458, 633, 825
MslI	CAYNNNNRTG	1 cut(s)	557
Msp20I	TGGCCA	1 cut(s)	686
MspA1I	CMGCKG	2 cut(s)	290, 387
MspI	CCGG	2 cut(s)	375, 668
MunI	CAATTG	1 cut(s)	894
MvnI	CGCG	1 cut(s)	387
MwoI	GCNNNNNNNGC	3 cut(s)	384, 390, 768
NaeI	GCCGGC	1 cut(s)	376
NcoI	CCATGG	1 cut(s)	193
NdeII	GATC	3 cut(s)	257, 276, 541
NgoMIV	GCCGGC	1 cut(s)	374
NheI	GCTAGC	1 cut(s)	364
NlaIII	CATG	6 cut(s)	197, 344, 556, 641, 790, 884
NlaIV	GGNNCC	2 cut(s)	123, 783
PdiI	GCCGGC	1 cut(s)	376
PdmI	GAANNNNTTC	1 cut(s)	318
PflMI	CCANNNNNTGG	1 cut(s)	479
PkrI	GCNGC	7 cut(s)	73, 92, 95, 183, 292, 386, 889
PleI	GAGTC	1 cut(s)	85
PpsI	GAGTC	1 cut(s)	85
PsiI	TTATAA	1 cut(s)	866
Psp124BI	GAGCTC	1 cut(s)	57
Psp1406I	AACGTT	1 cut(s)	24
PspN4I	GGNNCC	2 cut(s)	123, 783
PstI	CTGCAG	1 cut(s)	95
PvuII	CAGCTG	1 cut(s)	290
RsaI	GTAC	3 cut(s)	44, 516, 574
RsaNI	GTAC	3 cut(s)	43, 515, 573
RseI	CAYNNNNRTG	1 cut(s)	557
SacI	GAGCTC	1 cut(s)	57
SacII	CCGCGG	1 cut(s)	388
SaqAI	TTAA	3 cut(s)	458, 633, 825
SatI	GCNGC	7 cut(s)	72, 91, 94, 182, 291, 385, 888
Sau3AI	GATC	3 cut(s)	257, 276, 541
ScaI	AGTACT	1 cut(s)	516
SchI	GAGTC	1 cut(s)	86
SduI	GDGCHC	2 cut(s)	57, 622
SfaNI	GCATC	2 cut(s)	438, 709
SfcI	CTRYAG	1 cut(s)	91
Sfr303I	CCGCGG	1 cut(s)	388
SgrBI	CCGCGG	1 cut(s)	388
SmiMI	CAYNNNNRTG	1 cut(s)	557
Sse9I	AATT	4 cut(s)	446, 794, 894, 914
SsiI	CCGC	4 cut(s)	125, 137, 385, 387
SspMI	CTAG	5 cut(s)	81, 365, 410, 438, 777
SstI	GAGCTC	1 cut(s)	57
StyI	CCWWGG	2 cut(s)	193, 687
TaaI	ACNGT	2 cut(s)	64, 910
TaiI	ACGT	1 cut(s)	27
TaqI	TCGA	3 cut(s)	540, 546, 661
TasI	AATT	4 cut(s)	446, 794, 894, 914
TatI	WGTACW	2 cut(s)	42, 514
TauI	GCSGC	1 cut(s)	387
Tru1I	TTAA	3 cut(s)	458, 633, 825
Tru9I	TTAA	3 cut(s)	458, 633, 825
TscAI	CASTG	2 cut(s)	183, 564
TseI	GCWGC	6 cut(s)	71, 90, 93, 181, 290, 887
TspRI	CASTG	2 cut(s)	183, 564
Van91I	CCANNNNNTGG	1 cut(s)	479
XapI	RAATTY	3 cut(s)	446, 794, 914
XmiI	GTMKAC	2 cut(s)	5, 245
XmnI	GAANNNNTTC	1 cut(s)	318
XspI	CTAG	5 cut(s)	81, 365, 410, 438, 777
ZrmI	AGTACT	1 cut(s)	516

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.